RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 EXOSC8Q96B26 276 aaKnown RBP20.16■□□□□ 0.82
CLN3-207ENST00000395653 C19orf60Q96EN9 201 aa20.16■□□□□ 0.82
CLN3-207ENST00000395653 TRIM4Q9C037 500 aa20.16■□□□□ 0.82
CLN3-207ENST00000395653 MIEF1Q9NQG6 463 aa20.16■□□□□ 0.82
CLN3-207ENST00000395653 SLC35C2Q9NQQ7 365 aa20.16■□□□□ 0.82
CLN3-207ENST00000395653 GIMAP4Q9NUV9 329 aa20.16■□□□□ 0.82
CLN3-207ENST00000395653 ANKRD10Q9NXR5 420 aa20.16■□□□□ 0.82
CLN3-207ENST00000395653 TAS2R7Q9NYW3 318 aa20.16■□□□□ 0.82
CLN3-207ENST00000395653 PCDHGB6Q9Y5F9 930 aa20.16■□□□□ 0.82
CLN3-207ENST00000395653 HMGB1P1B2RPK0 211 aaPredicted RBP20.15■□□□□ 0.82
CLN3-207ENST00000395653 J3QKU1 62 aa20.15■□□□□ 0.82
CLN3-207ENST00000395653 CT62P0C5K7 136 aa20.15■□□□□ 0.82
CLN3-207ENST00000395653 SDC1P18827 310 aa20.15■□□□□ 0.82
CLN3-207ENST00000395653 TACR1P25103 407 aa20.15■□□□□ 0.82
CLN3-207ENST00000395653 HLCSP50747 726 aa20.15■□□□□ 0.82
CLN3-207ENST00000395653 SSR4P51571 173 aa20.15■□□□□ 0.82
CLN3-207ENST00000395653 SLC37A1P57057 533 aa20.15■□□□□ 0.82
CLN3-207ENST00000395653 DUSP2Q05923 314 aa20.15■□□□□ 0.82
CLN3-207ENST00000395653 INAQ16352 499 aa20.15■□□□□ 0.82
CLN3-207ENST00000395653 PRICKLE4Q2TBC4 344 aa20.15■□□□□ 0.82
CLN3-207ENST00000395653 ZNF468Q5VIY5 522 aaPredicted RBP20.15■□□□□ 0.82
CLN3-207ENST00000395653 ATG16L1Q676U5 607 aa20.15■□□□□ 0.82
CLN3-207ENST00000395653 FAM180BQ6P0A1 224 aa20.15■□□□□ 0.82
CLN3-207ENST00000395653 C9orf40Q8IXQ3 194 aa20.15■□□□□ 0.82
CLN3-207ENST00000395653 C3orf30Q96M34 536 aa20.15■□□□□ 0.82
CLN3-207ENST00000395653 SIGLEC12Q96PQ1 595 aa20.15■□□□□ 0.82
CLN3-207ENST00000395653 LRFN1Q9P244 771 aa20.15■□□□□ 0.82
CLN3-207ENST00000395653 EXO1Q9UQ84 846 aaKnown RBP20.15■□□□□ 0.82
CLN3-207ENST00000395653 ENTPD4Q9Y227 616 aa20.15■□□□□ 0.82
CLN3-207ENST00000395653 ATP6AP2A0A1C7CYW4 349 aa20.14■□□□□ 0.81
CLN3-207ENST00000395653 ATP6AP2O75787 350 aa20.14■□□□□ 0.81
CLN3-207ENST00000395653 SASH3O75995 380 aa20.14■□□□□ 0.81
CLN3-207ENST00000395653 NEURL1O76050 574 aa20.14■□□□□ 0.81
CLN3-207ENST00000395653 CLPSP04118 112 aa20.14■□□□□ 0.81
CLN3-207ENST00000395653 MAPK1P28482 360 aa20.14■□□□□ 0.81
CLN3-207ENST00000395653 MGAT2Q10469 447 aa20.14■□□□□ 0.81
CLN3-207ENST00000395653 MAP4K2Q12851 820 aa20.14■□□□□ 0.81
CLN3-207ENST00000395653 PRR30Q53SZ7 412 aaPredicted RBP20.14■□□□□ 0.81
CLN3-207ENST00000395653 ZNF766Q5HY98 468 aa20.14■□□□□ 0.81
CLN3-207ENST00000395653 C6orf136Q5SQH8 315 aa20.14■□□□□ 0.81
CLN3-207ENST00000395653 SPINK14Q6IE38 97 aa20.14■□□□□ 0.81
CLN3-207ENST00000395653 SLC29A4Q7RTT9 530 aa20.14■□□□□ 0.81
CLN3-207ENST00000395653 TICAM1Q8IUC6 712 aa20.14■□□□□ 0.81
CLN3-207ENST00000395653 VWA5B2Q8N398 1253 aa20.14■□□□□ 0.81
CLN3-207ENST00000395653 CISD2Q8N5K1 135 aaKnown RBP20.14■□□□□ 0.81
CLN3-207ENST00000395653 TMEM156Q8N614 296 aa20.14■□□□□ 0.81
CLN3-207ENST00000395653 OR7G1Q8NGA0 311 aa20.14■□□□□ 0.81
CLN3-207ENST00000395653 MIB2Q96AX9 1013 aa20.14■□□□□ 0.81
CLN3-207ENST00000395653 SNRNP40Q96DI7 357 aaKnown RBP20.14■□□□□ 0.81
CLN3-207ENST00000395653 ZNF764Q96H86 408 aaPredicted RBP20.14■□□□□ 0.81
CLN3-207ENST00000395653 EGLN2Q96KS0 407 aa20.14■□□□□ 0.81
CLN3-207ENST00000395653 THAP1Q9NVV9 213 aa20.14■□□□□ 0.81
CLN3-207ENST00000395653 MAT2BQ9NZL9 334 aa20.14■□□□□ 0.81
CLN3-207ENST00000395653 PRRC2CQ9Y520 2896 aaKnown RBP20.13■□□□□ 0.81
CLN3-207ENST00000395653 WWP2O00308 870 aa20.13■□□□□ 0.81
CLN3-207ENST00000395653 PEX11AO75192 247 aa20.13■□□□□ 0.81
CLN3-207ENST00000395653 SNNO75324 88 aaPredicted RBP20.13■□□□□ 0.81
CLN3-207ENST00000395653 OR2J2O76002 312 aa20.13■□□□□ 0.81
CLN3-207ENST00000395653 JUNP05412 331 aaKnown RBP20.13■□□□□ 0.81
CLN3-207ENST00000395653 BCKDHAP12694 445 aa20.13■□□□□ 0.81
CLN3-207ENST00000395653 CD46P15529 392 aa20.13■□□□□ 0.81
CLN3-207ENST00000395653 SSTR4P31391 388 aa20.13■□□□□ 0.81
CLN3-207ENST00000395653 ASMTP46597 345 aa20.13■□□□□ 0.81
CLN3-207ENST00000395653 ST13P50502 369 aaKnown RBP20.13■□□□□ 0.81
CLN3-207ENST00000395653 FOXK1P85037 733 aa20.13■□□□□ 0.81
CLN3-207ENST00000395653 EBPQ15125 230 aaKnown RBP20.13■□□□□ 0.81
CLN3-207ENST00000395653 PDCD2Q16342 344 aaPredicted RBP20.13■□□□□ 0.81
CLN3-207ENST00000395653 MPEG1Q2M385 716 aa20.13■□□□□ 0.81
CLN3-207ENST00000395653 C16orf47Q6ZP98 133 aaPredicted RBP20.13■□□□□ 0.81
CLN3-207ENST00000395653 GPALPP1Q8IXQ4 340 aa20.13■□□□□ 0.81
CLN3-207ENST00000395653 ZNF615Q8N8J6 731 aa20.13■□□□□ 0.81
CLN3-207ENST00000395653 ZNF675Q8TD23 568 aa20.13■□□□□ 0.81
CLN3-207ENST00000395653 CTHRC1Q96CG8 243 aa20.13■□□□□ 0.81
CLN3-207ENST00000395653 TUBGCP3Q96CW5 907 aa20.13■□□□□ 0.81
CLN3-207ENST00000395653 SCMH1Q96GD3 660 aa20.13■□□□□ 0.81
CLN3-207ENST00000395653 RASL10BQ96S79 203 aa20.13■□□□□ 0.81
CLN3-207ENST00000395653 BRINP2Q9C0B6 783 aa20.13■□□□□ 0.81
CLN3-207ENST00000395653 MANSC1Q9H8J5 431 aa20.13■□□□□ 0.81
CLN3-207ENST00000395653 LIN28AQ9H9Z2 209 aaKnown RBP20.13■□□□□ 0.81
CLN3-207ENST00000395653 RYDENQ9NUL5 291 aaKnown RBP20.13■□□□□ 0.81
CLN3-207ENST00000395653 GIMAP2Q9UG22 337 aa20.13■□□□□ 0.81
CLN3-207ENST00000395653 COPG1Q9Y678 874 aaKnown RBP20.13■□□□□ 0.81
CLN3-207ENST00000395653 FASNP49327 2511 aaKnown RBP20.13■□□□□ 0.81
CLN3-207ENST00000395653 S1PR1P21453 382 aa20.12■□□□□ 0.81
CLN3-207ENST00000395653 ZNF227Q86WZ6 799 aa20.12■□□□□ 0.81
CLN3-207ENST00000395653 CCDC116Q8IYX3 515 aa20.12■□□□□ 0.81
CLN3-207ENST00000395653 TMEM178AQ8NBL3 297 aa20.12■□□□□ 0.81
CLN3-207ENST00000395653 C5orf34Q96MH7 638 aa20.12■□□□□ 0.81
CLN3-207ENST00000395653 TSSK3Q96PN8 268 aa20.12■□□□□ 0.81
CLN3-207ENST00000395653 BARD1Q99728 777 aaKnown RBP20.12■□□□□ 0.81
CLN3-207ENST00000395653 WWTR1Q9GZV5 400 aa20.12■□□□□ 0.81
CLN3-207ENST00000395653 OR10A5Q9H207 317 aa20.12■□□□□ 0.81
CLN3-207ENST00000395653 ZNF639Q9UID6 485 aa20.12■□□□□ 0.81
CLN3-207ENST00000395653 HELZ2Q9BYK8 2649 aaKnown RBP20.12■□□□□ 0.81
CLN3-207ENST00000395653 MYO1GB0I1T2 1018 aa20.11■□□□□ 0.81
CLN3-207ENST00000395653 KLF11O14901 512 aa20.11■□□□□ 0.81
CLN3-207ENST00000395653 TBX19O60806 448 aa20.11■□□□□ 0.81
CLN3-207ENST00000395653 SLC25A12O75746 678 aa20.11■□□□□ 0.81
CLN3-207ENST00000395653 MPIP34949 423 aa20.11■□□□□ 0.81
CLN3-207ENST00000395653 SMU1Q2TAY7 513 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms