RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 SPINT3P49223 89 aa13□□□□□ -0.33
USP49-201ENST00000373006 SYTL3Q4VX76 610 aa13□□□□□ -0.33
USP49-201ENST00000373006 ZNF628Q5EBL2 1059 aa13□□□□□ -0.33
USP49-201ENST00000373006 REEP3Q6NUK4 255 aa13□□□□□ -0.33
USP49-201ENST00000373006 MED27Q6P2C8 311 aa13□□□□□ -0.33
USP49-201ENST00000373006 OLIG3Q7RTU3 272 aa13□□□□□ -0.33
USP49-201ENST00000373006 TMEM145Q8NBT3 493 aa13□□□□□ -0.33
USP49-201ENST00000373006 PUM2Q8TB72 1066 aaKnown RBP eCLIP13□□□□□ -0.33
USP49-201ENST00000373006 C16orf78Q8WTQ4 265 aa13□□□□□ -0.33
USP49-201ENST00000373006 VOPP1Q96AW1 172 aa13□□□□□ -0.33
USP49-201ENST00000373006 DCLRE1CQ96SD1 692 aaKnown RBP13□□□□□ -0.33
USP49-201ENST00000373006 WACQ9BTA9 647 aa13□□□□□ -0.33
USP49-201ENST00000373006 SUV39H2Q9H5I1 410 aa13□□□□□ -0.33
USP49-201ENST00000373006 RBFOX1Q9NWB1 397 aaKnown RBP13□□□□□ -0.33
USP49-201ENST00000373006 ING3Q9NXR8 418 aa13□□□□□ -0.33
USP49-201ENST00000373006 GULP1Q9UBP9 304 aa13□□□□□ -0.33
USP49-201ENST00000373006 C5orf42Q9H799 3197 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 TET1Q8NFU7 2136 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 TMEM88BA6NKF7 163 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 WASHC1A8K0Z3 465 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 H7C4K7 107 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 SEC14L5O43304 696 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 LYRM1O43325 122 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 TSPAN6O43657 245 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 PSIP1O75475 530 aaKnown RBP12.99□□□□□ -0.33
USP49-201ENST00000373006 C1QBP02746 253 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 SMSP52788 366 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 CTBP2P56545 445 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 WDR5P61964 334 aaKnown RBP12.99□□□□□ -0.33
USP49-201ENST00000373006 FABP5Q01469 135 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 SYT14P1Q58G82 188 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 C12orf73Q69YU5 71 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 ACSM5Q6NUN0 579 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 PGBD2Q6P3X8 592 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 B3GLCTQ6Y288 498 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 ZNF730Q6ZMV8 503 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 PLCZ1Q86YW0 608 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 HORMAD2Q8N7B1 307 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 ZNF740Q8NDX6 193 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 MYLIPQ8WY64 445 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 QRFPRQ96P65 431 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 CXorf36Q9H7Y0 433 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 SEMA3GQ9NS98 782 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 KCND3Q9UK17 655 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 ISM1B1AKI9 464 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 LGI1O95970 557 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 IL3P08700 152 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 HSD3B1P14060 373 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 CPEP16870 476 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 ENPP1P22413 925 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 HSD3B2P26439 372 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 INPP1P49441 399 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 BNC1Q01954 994 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 SLBPQ14493 270 aaKnown RBP eCLIP12.99□□□□□ -0.33
USP49-201ENST00000373006 GINS1Q14691 196 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 BRAT1Q6PJG6 821 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 Q6ZVL8 140 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 TOR1AIP2Q8NFQ8 470 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 ADAMTS19Q8TE59 1207 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 C5AR2Q9P296 337 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 KCNE2Q9Y6J6 123 aa12.99□□□□□ -0.33
USP49-201ENST00000373006 PLOD3O60568 738 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 RAB36O95755 333 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 H1F0P07305 194 aaKnown RBP12.98□□□□□ -0.33
USP49-201ENST00000373006 GALTP07902 379 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 GSTM1P09488 218 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 SOX18P35713 384 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 CTSCP53634 463 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 TNK1Q13470 666 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 ELOAQ14241 798 aaKnown RBP12.98□□□□□ -0.33
USP49-201ENST00000373006 LRRC32Q14392 662 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 TMEM201Q5SNT2 666 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 ZNF57Q68EA5 555 aaPredicted RBP12.98□□□□□ -0.33
USP49-201ENST00000373006 UNC5DQ6UXZ4 953 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 SLCO4C1Q6ZQN7 724 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 LHFPL3Q86UP9 236 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 IFNL1Q8IU54 200 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 OR6C4Q8NGE1 309 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 ANGPTL6Q8NI99 470 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 TMEM159Q96B96 161 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 TMEM19Q96HH6 336 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 CASD1Q96PB1 797 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 LYSMD1Q96S90 227 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 PPP1R3EQ9H7J1 279 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 TBC1D17Q9HA65 648 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 MIEF1Q9NQG6 463 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 MGAT4BQ9UQ53 548 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 ZNF197O14709 1029 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 KLHL18O94889 574 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 RPLP2P05387 115 aaKnown RBP12.98□□□□□ -0.33
USP49-201ENST00000373006 PRKAR1AP10644 381 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 ARSBP15848 533 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 MYL12AP19105 171 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 POLR2CP19387 275 aaPredicted RBP12.98□□□□□ -0.33
USP49-201ENST00000373006 MAPK8P45983 427 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 ZNF33BQ06732 778 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 PLK5Q496M5 336 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 C2orf73Q8N5S3 287 aaPredicted RBP12.98□□□□□ -0.33
USP49-201ENST00000373006 SLC9A6Q92581 669 aa12.98□□□□□ -0.33
USP49-201ENST00000373006 TMED9Q9BVK6 235 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms