RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 ATF6BQ99941 703 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 SLCO1B3Q9NPD5 702 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 TAS2R10Q9NYW0 307 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 APOBEC3BQ9UH17 382 aaKnown RBP9.36□□□□□ -0.91
CHD3-202ENST00000358181 WDR37Q9Y2I8 494 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 OR51F1A6NGY5 319 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 GLTPD2A6NH11 291 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 EPCAMP16422 314 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 HOXA10P31260 410 aaPredicted RBP9.36□□□□□ -0.91
CHD3-202ENST00000358181 GKP32189 559 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 GATMP50440 423 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 RPS13P62277 151 aaKnown RBP9.36□□□□□ -0.91
CHD3-202ENST00000358181 DOC2AQ14183 400 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 DHCR24Q15392 516 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 LRRC38Q5VT99 294 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 TMCO2Q7Z6W1 182 aaPredicted RBP9.36□□□□□ -0.91
CHD3-202ENST00000358181 CTU1Q7Z7A3 348 aaKnown RBP9.36□□□□□ -0.91
CHD3-202ENST00000358181 CPNE8Q86YQ8 564 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 PCED1BQ96HM7 432 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 FAM71F1Q96KD3 344 aaPredicted RBP9.36□□□□□ -0.91
CHD3-202ENST00000358181 TMEM246Q9BRR3 403 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 MRI1Q9BV20 369 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 RNF38Q9H0F5 515 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 hCG_1818297A0A087WSY0 165 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 SOWAHBA6NEL2 793 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 TRAF3IP2O43734 574 aaPredicted RBP9.36□□□□□ -0.91
CHD3-202ENST00000358181 FAM163BP0C2L3 166 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 TYRP14679 529 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 SLC6A6P31641 620 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 AGFG1P52594 562 aaKnown RBP9.36□□□□□ -0.91
CHD3-202ENST00000358181 MELKQ14680 651 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 PTPRRQ15256 657 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 NSDHLQ15738 373 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 SYT16Q17RD7 645 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 SLC25A52Q3SY17 297 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 GLT8D1Q68CQ7 371 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 TRABD2AQ86V40 505 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 FAM163AQ96GL9 167 aaPredicted RBP9.36□□□□□ -0.91
CHD3-202ENST00000358181 HS6ST2Q96MM7 605 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 LMF1Q96S06 567 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 CAPN8A6NHC0 703 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 HCRTO43612 131 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 LY86O95711 162 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 GALTP07902 379 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 CDC34P49427 236 aaPredicted RBP9.36□□□□□ -0.91
CHD3-202ENST00000358181 PLAURQ03405 335 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 AUHQ13825 339 aaKnown RBP9.36□□□□□ -0.91
CHD3-202ENST00000358181 PAMR1Q6UXH9 720 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 CREB3L2Q70SY1 520 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 PIWIL4Q7Z3Z4 852 aaKnown RBP9.36□□□□□ -0.91
CHD3-202ENST00000358181 THOC6Q86W42 341 aaKnown RBP9.36□□□□□ -0.91
CHD3-202ENST00000358181 HNRNPLLQ8WVV9 542 aaKnown RBP9.36□□□□□ -0.91
CHD3-202ENST00000358181 AGXT2Q9BYV1 514 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 SUV39H2Q9H5I1 410 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 CWH43Q9H720 699 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 TEX10Q9NXF1 929 aaPredicted RBP9.36□□□□□ -0.91
CHD3-202ENST00000358181 PTCH2Q9Y6C5 1203 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 RNF225M0QZC1 329 aaPredicted RBP9.36□□□□□ -0.91
CHD3-202ENST00000358181 RP2O75695 350 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 CSTAP01040 98 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 DDCP20711 480 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 NSG1P42857 185 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 LASP1Q14847 261 aaKnown RBP9.36□□□□□ -0.91
CHD3-202ENST00000358181 NCEH1Q6PIU2 408 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 FAM185AQ8N0U4 392 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 OR9A4Q8NGU2 314 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 SLC5A11Q8WWX8 675 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 ZNF347Q96SE7 839 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 ERVK-6Q9BXR3 956 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 ERVK-19Q9WJR5 959 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 NPTNQ9Y639 398 aa9.36□□□□□ -0.91
CHD3-202ENST00000358181 MYH6P13533 1939 aa9.35□□□□□ -0.91
CHD3-202ENST00000358181 MYBPHLA2RUH7 354 aa9.35□□□□□ -0.91
CHD3-202ENST00000358181 I3L521 148 aa9.35□□□□□ -0.91
CHD3-202ENST00000358181 ECI2O75521 394 aa9.35□□□□□ -0.91
CHD3-202ENST00000358181 STT3AP46977 705 aa9.35□□□□□ -0.91
CHD3-202ENST00000358181 FKBP1AP62942 108 aaKnown RBP9.35□□□□□ -0.91
CHD3-202ENST00000358181 BST1Q10588 318 aa9.35□□□□□ -0.91
CHD3-202ENST00000358181 AGAP2Q99490 1192 aa9.35□□□□□ -0.91
CHD3-202ENST00000358181 NKX3-1Q99801 234 aaPredicted RBP9.35□□□□□ -0.91
CHD3-202ENST00000358181 HOPXQ9BPY8 73 aaPredicted RBP9.35□□□□□ -0.91
CHD3-202ENST00000358181 SYNPO2LQ9H987 977 aa9.35□□□□□ -0.91
CHD3-202ENST00000358181 STARD5Q9NSY2 213 aa9.35□□□□□ -0.91
CHD3-202ENST00000358181 ZNF358Q9NW07 568 aa9.35□□□□□ -0.91
CHD3-202ENST00000358181 SLC17A6Q9P2U8 582 aa9.35□□□□□ -0.91
CHD3-202ENST00000358181 SARDHQ9UL12 918 aa9.35□□□□□ -0.91
CHD3-202ENST00000358181 DIRAS1O95057 198 aa9.35□□□□□ -0.91
CHD3-202ENST00000358181 GRIA2P42262 883 aa9.35□□□□□ -0.91
CHD3-202ENST00000358181 LIMK2P53671 638 aa9.35□□□□□ -0.91
CHD3-202ENST00000358181 SF3B4Q15427 424 aaKnown RBP eCLIP9.35□□□□□ -0.911e-6■■■□□ 17.6
CHD3-202ENST00000358181 FAM189A2Q15884 450 aa9.35□□□□□ -0.91
CHD3-202ENST00000358181 LRRC55Q6ZSA7 311 aa9.35□□□□□ -0.91
CHD3-202ENST00000358181 XYLT1Q86Y38 959 aa9.35□□□□□ -0.91
CHD3-202ENST00000358181 C1orf52Q8N6N3 182 aaKnown RBP9.35□□□□□ -0.91
CHD3-202ENST00000358181 FAM156AQ8NDB6 213 aa9.35□□□□□ -0.91
CHD3-202ENST00000358181 ZNF775Q96BV0 537 aaPredicted RBP9.35□□□□□ -0.91
CHD3-202ENST00000358181 TAS2R9Q9NYW1 312 aa9.35□□□□□ -0.91
CHD3-202ENST00000358181 RHBDD3Q9Y3P4 386 aa9.35□□□□□ -0.91
CHD3-202ENST00000358181 PCDHGA11Q9Y5H2 935 aa9.35□□□□□ -0.91
CHD3-202ENST00000358181 TLX2O43763 284 aaPredicted RBP9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms