RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 BNC2Q6ZN30 1099 aaPredicted RBP16.97■□□□□ 0.31
CLN3-202ENST00000355477 SLC29A4Q7RTT9 530 aa16.97■□□□□ 0.31
CLN3-202ENST00000355477 DOLPP1Q86YN1 238 aa16.97■□□□□ 0.31
CLN3-202ENST00000355477 ZNF615Q8N8J6 731 aa16.97■□□□□ 0.31
CLN3-202ENST00000355477 GOLM1Q8NBJ4 401 aa16.97■□□□□ 0.31
CLN3-202ENST00000355477 CCDC126Q96EE4 140 aa16.97■□□□□ 0.31
CLN3-202ENST00000355477 DEFB127Q9H1M4 99 aa16.97■□□□□ 0.31
CLN3-202ENST00000355477 PPCSQ9HAB8 311 aa16.97■□□□□ 0.31
CLN3-202ENST00000355477 SH2D2AQ9NP31 389 aa16.97■□□□□ 0.31
CLN3-202ENST00000355477 MID1IP1Q9NPA3 183 aa16.97■□□□□ 0.31
CLN3-202ENST00000355477 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.97■□□□□ 0.31
CLN3-202ENST00000355477 GRID1Q9ULK0 1009 aa16.97■□□□□ 0.31
CLN3-202ENST00000355477 A0A1B0GTH9 108 aa16.96■□□□□ 0.31
CLN3-202ENST00000355477 OR6C76A6NM76 312 aa16.96■□□□□ 0.31
CLN3-202ENST00000355477 FAM166BA8MTA8 275 aa16.96■□□□□ 0.31
CLN3-202ENST00000355477 CDC40O60508 579 aaKnown RBP eCLIP16.96■□□□□ 0.31
CLN3-202ENST00000355477 GUCY1B2O75343 617 aa16.96■□□□□ 0.31
CLN3-202ENST00000355477 ENO1P06733 434 aaKnown RBP16.96■□□□□ 0.31
CLN3-202ENST00000355477 ABOP16442 354 aa16.96■□□□□ 0.31
CLN3-202ENST00000355477 KRT4P19013 534 aa16.96■□□□□ 0.31
CLN3-202ENST00000355477 S1PR1P21453 382 aa16.96■□□□□ 0.31
CLN3-202ENST00000355477 NT5EP21589 574 aa16.96■□□□□ 0.31
CLN3-202ENST00000355477 FEN1P39748 380 aaKnown RBP16.96■□□□□ 0.31
CLN3-202ENST00000355477 DCTP40126 519 aa16.96■□□□□ 0.31
CLN3-202ENST00000355477 NAGLUP54802 743 aa16.96■□□□□ 0.31
CLN3-202ENST00000355477 CASP6P55212 293 aa16.96■□□□□ 0.31
CLN3-202ENST00000355477 PPIAP62937 165 aaKnown RBP16.96■□□□□ 0.31
CLN3-202ENST00000355477 ADORA2A-AS1P86434 159 aa16.96■□□□□ 0.31
CLN3-202ENST00000355477 HMGCS1Q01581 520 aa16.96■□□□□ 0.31
CLN3-202ENST00000355477 DUSP2Q05923 314 aa16.96■□□□□ 0.31
CLN3-202ENST00000355477 MGAT2Q10469 447 aa16.96■□□□□ 0.31
CLN3-202ENST00000355477 FUT7Q11130 342 aa16.96■□□□□ 0.31
CLN3-202ENST00000355477 GALNT12Q8IXK2 581 aa16.96■□□□□ 0.31
CLN3-202ENST00000355477 C4orf33Q8N1A6 199 aa16.96■□□□□ 0.31
CLN3-202ENST00000355477 SLC15A4Q8N697 577 aa16.96■□□□□ 0.31
CLN3-202ENST00000355477 ZNF441Q8N8Z8 693 aa16.96■□□□□ 0.31
CLN3-202ENST00000355477 SLC22A8Q8TCC7 542 aa16.96■□□□□ 0.31
CLN3-202ENST00000355477 SPACA9Q96E40 222 aaPredicted RBP16.96■□□□□ 0.31
CLN3-202ENST00000355477 APIPQ96GX9 242 aa16.96■□□□□ 0.31
CLN3-202ENST00000355477 PHF12Q96QT6 1004 aa16.96■□□□□ 0.31
CLN3-202ENST00000355477 SACM1LQ9NTJ5 587 aa16.96■□□□□ 0.31
CLN3-202ENST00000355477 HEY2Q9UBP5 337 aa16.96■□□□□ 0.31
CLN3-202ENST00000355477 SUCOQ9UBS9 1254 aaKnown RBP16.96■□□□□ 0.31
CLN3-202ENST00000355477 STK38LQ9Y2H1 464 aa16.96■□□□□ 0.31
CLN3-202ENST00000355477 ABCA12Q86UK0 2595 aa16.95■□□□□ 0.3
CLN3-202ENST00000355477 TLDC2A0PJX2 215 aa16.95■□□□□ 0.3
CLN3-202ENST00000355477 COPEO14579 308 aa16.95■□□□□ 0.3
CLN3-202ENST00000355477 CDH16O75309 829 aa16.95■□□□□ 0.3
CLN3-202ENST00000355477 ERAL1O75616 437 aaKnown RBP16.95■□□□□ 0.3
CLN3-202ENST00000355477 GLSO94925 669 aaPredicted RBP16.95■□□□□ 0.3
CLN3-202ENST00000355477 SOX18P35713 384 aa16.95■□□□□ 0.3
CLN3-202ENST00000355477 PIGAP37287 484 aa16.95■□□□□ 0.3
CLN3-202ENST00000355477 DNASE1L1P49184 302 aa16.95■□□□□ 0.3
CLN3-202ENST00000355477 DNAJB13P59910 316 aa16.95■□□□□ 0.3
CLN3-202ENST00000355477 TRA2BP62995 288 aaKnown RBP16.95■□□□□ 0.3
CLN3-202ENST00000355477 PLGLB1Q02325 96 aa16.95■□□□□ 0.3
CLN3-202ENST00000355477 SLC18A2Q05940 514 aa16.95■□□□□ 0.3
CLN3-202ENST00000355477 FOXO1Q12778 655 aa16.95■□□□□ 0.3
CLN3-202ENST00000355477 CCDC153Q494R4 210 aa16.95■□□□□ 0.3
CLN3-202ENST00000355477 FAM111BQ6SJ93 734 aa16.95■□□□□ 0.3
CLN3-202ENST00000355477 TMEM64Q6YI46 380 aa16.95■□□□□ 0.3
CLN3-202ENST00000355477 C3P1Q6ZMU1 363 aa16.95■□□□□ 0.3
CLN3-202ENST00000355477 FAM47EQ6ZV65 393 aa16.95■□□□□ 0.3
CLN3-202ENST00000355477 NCCRP1Q6ZVX7 275 aaPredicted RBP16.95■□□□□ 0.3
CLN3-202ENST00000355477 MRGPRGQ86SM5 289 aa16.95■□□□□ 0.3
CLN3-202ENST00000355477 GBP7Q8N8V2 638 aaPredicted RBP16.95■□□□□ 0.3
CLN3-202ENST00000355477 C11orf24Q96F05 449 aaPredicted RBP16.95■□□□□ 0.3
CLN3-202ENST00000355477 ZNF681Q96N22 645 aa16.95■□□□□ 0.3
CLN3-202ENST00000355477 FAM173AQ9BQD7 235 aa16.95■□□□□ 0.3
CLN3-202ENST00000355477 TTTY12Q9BZ98 90 aa16.95■□□□□ 0.3
CLN3-202ENST00000355477 OR10A5Q9H207 317 aa16.95■□□□□ 0.3
CLN3-202ENST00000355477 TNFRSF12AQ9NP84 129 aa16.95■□□□□ 0.3
CLN3-202ENST00000355477 PLSCR2Q9NRY7 297 aa16.95■□□□□ 0.3
CLN3-202ENST00000355477 OXSMQ9NWU1 459 aa16.95■□□□□ 0.3
CLN3-202ENST00000355477 TUBA8Q9NY65 449 aaPredicted RBP16.95■□□□□ 0.3
CLN3-202ENST00000355477 MCM8Q9UJA3 840 aa16.95■□□□□ 0.3
CLN3-202ENST00000355477 MEMO1Q9Y316 297 aa16.95■□□□□ 0.3
CLN3-202ENST00000355477 HRH3Q9Y5N1 445 aa16.95■□□□□ 0.3
CLN3-202ENST00000355477 PHF3Q92576 2039 aaKnown RBP16.95■□□□□ 0.3
CLN3-202ENST00000355477 PKDREJQ9NTG1 2253 aa16.95■□□□□ 0.3
CLN3-202ENST00000355477 C2orf92A0A1B0GVN3 265 aa16.94■□□□□ 0.3
CLN3-202ENST00000355477 ADAM10O14672 748 aa16.94■□□□□ 0.3
CLN3-202ENST00000355477 PCDH7O60245 1069 aa16.94■□□□□ 0.3
CLN3-202ENST00000355477 P04436 131 aa16.94■□□□□ 0.3
CLN3-202ENST00000355477 FBXO45P0C2W1 286 aa16.94■□□□□ 0.3
CLN3-202ENST00000355477 ESRRAP11474 423 aaPredicted RBP16.94■□□□□ 0.3
CLN3-202ENST00000355477 CPA3P15088 417 aa16.94■□□□□ 0.3
CLN3-202ENST00000355477 SERPINB3P29508 390 aa16.94■□□□□ 0.3
CLN3-202ENST00000355477 PTGS2P35354 604 aa16.94■□□□□ 0.3
CLN3-202ENST00000355477 DEKP35659 375 aaKnown RBP16.94■□□□□ 0.3
CLN3-202ENST00000355477 ALDH9A1P49189 494 aa16.94■□□□□ 0.3
CLN3-202ENST00000355477 BTKQ06187 659 aa16.94■□□□□ 0.3
CLN3-202ENST00000355477 PRICKLE4Q2TBC4 344 aa16.94■□□□□ 0.3
CLN3-202ENST00000355477 SLC22A10Q63ZE4 541 aa16.94■□□□□ 0.3
CLN3-202ENST00000355477 MTFR2Q6P444 385 aa16.94■□□□□ 0.3
CLN3-202ENST00000355477 FRMD7Q6ZUT3 714 aa16.94■□□□□ 0.3
CLN3-202ENST00000355477 SIMC1Q8NDZ2 872 aa16.94■□□□□ 0.3
CLN3-202ENST00000355477 ADCY4Q8NFM4 1077 aa16.94■□□□□ 0.3
CLN3-202ENST00000355477 OR10G3Q8NGC4 313 aa16.94■□□□□ 0.3
CLN3-202ENST00000355477 PAQR8Q8TEZ7 354 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms