RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 LRR1Q96L50 414 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 WRAP53Q9BUR4 548 aaKnown RBP6.44□□□□□ -1.38
VPS39-202ENST00000348544 SLC12A9Q9BXP2 914 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 HDHD2Q9H0R4 259 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 DNAJC11Q9NVH1 559 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 TNFRSF10DQ9UBN6 386 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 FKBP7Q9Y680 259 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 TDRD15B5MCY1 1934 aaKnown RBP6.44□□□□□ -1.38
VPS39-202ENST00000348544 LOC105369274A0A096LPK9 316 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 C2orf92A0A1B0GVN3 265 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 TRDV1A0A1B0GX56 115 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 A0A1W2PPL8 197 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 E7EQ34 232 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 OR10H3O60404 316 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 SERPINI2O75830 405 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 CELF2O95319 508 aaKnown RBP6.44□□□□□ -1.38
VPS39-202ENST00000348544 CLDN7O95471 211 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 HRGP04196 525 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 LIMS3P0CW19 117 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 LIMS4P0CW20 117 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 ZNF8P17098 575 aaPredicted RBP6.44□□□□□ -1.38
VPS39-202ENST00000348544 TYMPP19971 482 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 ITGALP20701 1170 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 CHI3L1P36222 383 aaPredicted RBP6.44□□□□□ -1.38
VPS39-202ENST00000348544 VSX2P58304 361 aaPredicted RBP6.44□□□□□ -1.38
VPS39-202ENST00000348544 RAB8AP61006 207 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 LSM11P83369 360 aaKnown RBP eCLIP6.44□□□□□ -1.38
VPS39-202ENST00000348544 B4GALNT1Q00973 533 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 BEX3Q00994 111 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 HSF2Q03933 536 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 BCL2L1Q07817 233 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 ADAM15Q13444 863 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 DOC2AQ14183 400 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 ZNF273Q14593 569 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 TUSC1Q2TAM9 212 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 RPS26P11Q5JNZ5 115 aaPredicted RBP6.44□□□□□ -1.38
VPS39-202ENST00000348544 CDKL4Q5MAI5 379 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 NDUFAF5Q5TEU4 345 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 RAET1GQ6H3X3 334 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 ACSM5Q6NUN0 579 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 CFAP77Q6ZQR2 320 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 USP45Q70EL2 814 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 MRPL10Q7Z7H8 261 aaKnown RBP6.44□□□□□ -1.38
VPS39-202ENST00000348544 MARCH9Q86YJ5 346 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 RBM45Q8IUH3 476 aaKnown RBP6.44□□□□□ -1.38
VPS39-202ENST00000348544 OR4N4Q8N0Y3 316 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 VPS37AQ8NEZ2 397 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 GPR156Q8NFN8 814 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 GPR32P1Q8NGA4 272 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 OR4D11Q8NGI4 311 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 OR6K2Q8NGY2 324 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 GOT1L1Q8NHS2 421 aaPredicted RBP6.44□□□□□ -1.38
VPS39-202ENST00000348544 UFD1Q92890 307 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 ZSWIM3Q96MP5 696 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 TINF2Q9BSI4 451 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 TMED9Q9BVK6 235 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 POLDIP3Q9BY77 421 aaKnown RBP6.44□□□□□ -1.38
VPS39-202ENST00000348544 POLR2J3Q9H1A7 115 aaKnown RBP6.44□□□□□ -1.38
VPS39-202ENST00000348544 ABCG5Q9H222 651 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 OR51J1Q9H342 316 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 KCTD5Q9NXV2 234 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 RDH8Q9NYR8 311 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 EXTL2Q9UBQ6 330 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 PHF11Q9UIL8 331 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 CRLS1Q9UJA2 301 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 GSTK1Q9Y2Q3 226 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 RNF215Q9Y6U7 377 aa6.44□□□□□ -1.38
VPS39-202ENST00000348544 CEP350Q5VT06 3117 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 GLYATL1P3A0A0U1RQE8 302 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 A0A1B0GVC2 190 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 A0A1B0GVM2 712 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 hCG_1807616A0A1W2PRN6 198 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 TMEM129A0AVI4 362 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 C17orf102A2RUQ5 167 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 A6NIN4 97 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 ACSL4O60488 711 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 RHOCP08134 193 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 ARAFP10398 606 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 NR2F6P10588 404 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 HSD3B1P14060 373 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 ZP3P21754 424 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 SRP9P49458 86 aaKnown RBP6.43□□□□□ -1.38
VPS39-202ENST00000348544 SMSP52788 366 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 CDH4P55283 916 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 MRPS6P82932 125 aaKnown RBP6.43□□□□□ -1.38
VPS39-202ENST00000348544 EFNB1P98172 346 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 PURAQ00577 322 aaKnown RBP6.43□□□□□ -1.38
VPS39-202ENST00000348544 MC1RQ01726 317 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 SEMG2Q02383 582 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 IRF8Q02556 426 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 TUSC3Q13454 348 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 SPIN4Q56A73 249 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 SHEQ5VZ18 495 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 CD276Q5ZPR3 534 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 ZNF772Q68DY9 489 aaPredicted RBP6.43□□□□□ -1.38
VPS39-202ENST00000348544 VASNQ6EMK4 673 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 TCTN3Q6NUS6 607 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 IL20RBQ6UXL0 311 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 SLC30A8Q8IWU4 369 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 GPC2Q8N158 579 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms