RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 OR2L8Q8NGY9 312 aa18.3■□□□□ 0.52
COL9A3-201ENST00000343916 SLC35G5Q96KT7 338 aa18.3■□□□□ 0.52
COL9A3-201ENST00000343916 ZNF354BQ96LW1 612 aa18.3■□□□□ 0.52
COL9A3-201ENST00000343916 MAPKAP1Q9BPZ7 522 aa18.3■□□□□ 0.52
COL9A3-201ENST00000343916 C1QTNF2Q9BXJ5 285 aa18.3■□□□□ 0.52
COL9A3-201ENST00000343916 FBXW2Q9UKT8 454 aa18.3■□□□□ 0.52
COL9A3-201ENST00000343916 TMCC3Q9ULS5 477 aa18.3■□□□□ 0.52
COL9A3-201ENST00000343916 EPOPA6NHQ4 379 aa18.3■□□□□ 0.52
COL9A3-201ENST00000343916 K7EQS6 105 aa18.3■□□□□ 0.52
COL9A3-201ENST00000343916 RFXAPO00287 272 aa18.3■□□□□ 0.52
COL9A3-201ENST00000343916 PEBP1P30086 187 aaKnown RBP18.3■□□□□ 0.52
COL9A3-201ENST00000343916 SERPINB10P48595 397 aa18.3■□□□□ 0.52
COL9A3-201ENST00000343916 IFITM3Q01628 133 aa18.3■□□□□ 0.52
COL9A3-201ENST00000343916 SLC9A5Q14940 896 aa18.3■□□□□ 0.52
COL9A3-201ENST00000343916 INAQ16352 499 aa18.3■□□□□ 0.52
COL9A3-201ENST00000343916 DCST1Q5T197 706 aa18.3■□□□□ 0.52
COL9A3-201ENST00000343916 WDR53Q7Z5U6 358 aaPredicted RBP18.3■□□□□ 0.52
COL9A3-201ENST00000343916 MFSD4AQ8N468 514 aa18.3■□□□□ 0.52
COL9A3-201ENST00000343916 OR6Q1Q8NGQ2 317 aa18.3■□□□□ 0.52
COL9A3-201ENST00000343916 PSMA8Q8TAA3 256 aa18.3■□□□□ 0.52
COL9A3-201ENST00000343916 MS4A6EQ96DS6 147 aa18.3■□□□□ 0.52
COL9A3-201ENST00000343916 TIMM29Q9BSF4 260 aa18.3■□□□□ 0.52
COL9A3-201ENST00000343916 MROQ9BYG7 248 aa18.3■□□□□ 0.52
COL9A3-201ENST00000343916 ANKRA2Q9H9E1 313 aa18.3■□□□□ 0.52
COL9A3-201ENST00000343916 P2RX2Q9UBL9 471 aa18.3■□□□□ 0.52
COL9A3-201ENST00000343916 OSGIN1Q9UJX0 560 aa18.3■□□□□ 0.52
COL9A3-201ENST00000343916 SLC17A4Q9Y2C5 497 aa18.3■□□□□ 0.52
COL9A3-201ENST00000343916 LOC100506127A0A0U1RQW1 187 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 A0A1W2PR48 441 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 MAN2B1O00754 1011 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 NME6O75414 186 aaPredicted RBP18.29■□□□□ 0.52
COL9A3-201ENST00000343916 PDE9AO76083 593 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 KIR2DL1P43626 348 aaPredicted RBP18.29■□□□□ 0.52
COL9A3-201ENST00000343916 RAB8AP61006 207 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 ITPRIPL2Q3MIP1 535 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 ZNF776Q68DI1 518 aaPredicted RBP18.29■□□□□ 0.52
COL9A3-201ENST00000343916 SYCE2Q6PIF2 218 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 CCDC116Q8IYX3 515 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 CACTIN-AS1Q8N1I8 211 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 OR2L3Q8NG85 312 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 SLC7A13Q8TCU3 470 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 BBS4Q96RK4 519 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 ZNF607Q96SK3 696 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 WDR12Q9GZL7 423 aaKnown RBP18.29■□□□□ 0.52
COL9A3-201ENST00000343916 MVB12BQ9H7P6 319 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 CTPS2Q9NRF8 586 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 TAS2R7Q9NYW3 318 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 REV1Q9UBZ9 1251 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 TBC1D3DA0A087WVF3 549 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 TBC1D3IA0A087WXS9 549 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 TBC1D3EA0A087X179 549 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 TBC1D3KA0A087X1G2 549 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 ARRDC5A6NEK1 342 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 TBC1D3FA6NER0 549 aaPredicted RBP18.29■□□□□ 0.52
COL9A3-201ENST00000343916 TBC1D3LB9A6J9 549 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 H1F0P07305 194 aaKnown RBP18.29■□□□□ 0.52
COL9A3-201ENST00000343916 TBC1D3HP0C7X1 549 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 CERS1P27544 350 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 GRK3P35626 688 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 LSM11P83369 360 aaKnown RBP eCLIP18.29■□□□□ 0.521e-8■■□□□ 12.6
COL9A3-201ENST00000343916 DNASE1L3Q13609 305 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 DOC2BQ14184 412 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 LASP1Q14847 261 aaKnown RBP18.29■□□□□ 0.52
COL9A3-201ENST00000343916 UAP1L1Q3KQV9 507 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 C18orf63Q68DL7 685 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 TBC1D3GQ6DHY5 549 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 TBC1D3CQ6IPX1 549 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 TBC1D3Q8IZP1 549 aaPredicted RBP18.29■□□□□ 0.52
COL9A3-201ENST00000343916 ACOT4Q8N9L9 421 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 CNRIP1Q96F85 164 aaPredicted RBP18.29■□□□□ 0.52
COL9A3-201ENST00000343916 FCRL4Q96PJ5 515 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 OR5M11Q96RB7 305 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 QRSL1Q9H0R6 528 aaKnown RBP18.29■□□□□ 0.52
COL9A3-201ENST00000343916 OR51E2Q9H255 320 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 FGF22Q9HCT0 170 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 SCN3AQ9NY46 2000 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 DSPPQ9NZW4 1301 aa18.29■□□□□ 0.52
COL9A3-201ENST00000343916 USP34Q70CQ2 3546 aa18.28■□□□□ 0.52
COL9A3-201ENST00000343916 H3BN98 237 aa18.28■□□□□ 0.52
COL9A3-201ENST00000343916 NARSO43776 548 aaKnown RBP18.28■□□□□ 0.52
COL9A3-201ENST00000343916 RNGTTO60942 597 aaKnown RBP18.28■□□□□ 0.52
COL9A3-201ENST00000343916 DRD2P14416 443 aa18.28■□□□□ 0.52
COL9A3-201ENST00000343916 HIST1H1TP22492 207 aaPredicted RBP18.28■□□□□ 0.52
COL9A3-201ENST00000343916 TMED10P49755 219 aaKnown RBP18.28■□□□□ 0.52
COL9A3-201ENST00000343916 ARMCX4Q5H9R4 360 aa18.28■□□□□ 0.52
COL9A3-201ENST00000343916 NUDT18Q6ZVK8 323 aa18.28■□□□□ 0.52
COL9A3-201ENST00000343916 SLC46A3Q7Z3Q1 461 aa18.28■□□□□ 0.52
COL9A3-201ENST00000343916 TRMT61BQ9BVS5 477 aaKnown RBP18.28■□□□□ 0.52
COL9A3-201ENST00000343916 PRDM7Q9NQW5 492 aa18.28■□□□□ 0.52
COL9A3-201ENST00000343916 FBXO8Q9NRD0 319 aa18.28■□□□□ 0.52
COL9A3-201ENST00000343916 ADAP00813 363 aa18.28■□□□□ 0.52
COL9A3-201ENST00000343916 DDX5P17844 614 aaKnown RBP18.28■□□□□ 0.52
COL9A3-201ENST00000343916 RPS3AP61247 264 aaKnown RBP18.28■□□□□ 0.52
COL9A3-201ENST00000343916 ZIC1Q15915 447 aa18.28■□□□□ 0.52
COL9A3-201ENST00000343916 RPE65Q16518 533 aa18.28■□□□□ 0.52
COL9A3-201ENST00000343916 ABHD17CQ6PCB6 329 aa18.28■□□□□ 0.52
COL9A3-201ENST00000343916 DGLUCYQ7Z3D6 616 aa18.28■□□□□ 0.52
COL9A3-201ENST00000343916 SUN3Q8TAQ9 357 aa18.28■□□□□ 0.52
COL9A3-201ENST00000343916 APOOQ9BUR5 198 aa18.28■□□□□ 0.52
COL9A3-201ENST00000343916 UCK2Q9BZX2 261 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms