RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 HK3P52790 923 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 GPR17Q13304 367 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 RSU1Q15404 277 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 STK11Q15831 433 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 GPR139Q6DWJ6 353 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 FAM217AQ8IXS0 508 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 IL17RCQ8NAC3 791 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 GOLM1Q8NBJ4 401 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 OR52P1PQ8NH57 321 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 GPR22Q99680 433 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 SACM1LQ9NTJ5 587 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 LATS1O95835 1130 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 PXNP49023 591 aaPredicted RBP12.07□□□□□ -0.48
SDC3-201ENST00000336798 C2CD4AQ8NCU7 369 aaPredicted RBP12.07□□□□□ -0.48
SDC3-201ENST00000336798 CREB3L4Q8TEY5 395 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 ZDHHC1Q8WTX9 485 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 LMF1Q96S06 567 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 TP63Q9H3D4 680 aaPredicted RBP12.07□□□□□ -0.48
SDC3-201ENST00000336798 COPZ2Q9P299 210 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 ACSL5Q9ULC5 683 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 AGAP5A6NIR3 686 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 K7ERQ8 282 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 OPN1LWP04000 364 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 ACRV1P26436 265 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 SOX3P41225 446 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 VIPR2P41587 438 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 KCNC1P48547 511 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 FXYD4P59646 89 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 SHC2P98077 582 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 ZNF616Q08AN1 781 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 ABHD18Q0P651 414 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 CYP1B1Q16678 543 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 ZNF404Q494X3 552 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 TRIM46Q7Z4K8 759 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 ZSWIM9Q86XI8 627 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 CMASQ8NFW8 434 aaPredicted RBP12.07□□□□□ -0.48
SDC3-201ENST00000336798 OR2T33Q8NG76 320 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 FAM124BQ9H5Z6 455 aaPredicted RBP12.07□□□□□ -0.48
SDC3-201ENST00000336798 RXFP3Q9NSD7 469 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 STARD5Q9NSY2 213 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 PTBP2Q9UKA9 531 aaKnown RBP12.07□□□□□ -0.48
SDC3-201ENST00000336798 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.07□□□□□ -0.48
SDC3-201ENST00000336798 RBBP9O75884 186 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 ACTL6BO94805 426 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 S100PP25815 95 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 FRKP42685 505 aaPredicted RBP12.07□□□□□ -0.48
SDC3-201ENST00000336798 NSDHLQ15738 373 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 CATSPEREQ5SY80 951 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 KANSL1Q7Z3B3 1105 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 ZDHHC18Q9NUE0 388 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 MDFIC2A0A1B0GVS7 189 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 LCHNA4D1U4 455 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 M0R233 179 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 IL1RNP18510 177 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 DPP6P42658 865 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 SIM1P81133 766 aaPredicted RBP12.07□□□□□ -0.48
SDC3-201ENST00000336798 MOGSQ13724 837 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 COL28A1Q2UY09 1125 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 LEG1Q6P5S2 330 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 IGSF8Q969P0 613 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 FAM46AQ96IP4 442 aaKnown RBP12.07□□□□□ -0.48
SDC3-201ENST00000336798 NAA11Q9BSU3 229 aaPredicted RBP12.07□□□□□ -0.48
SDC3-201ENST00000336798 SYT4Q9H2B2 425 aa12.07□□□□□ -0.48
SDC3-201ENST00000336798 VEGFDO43915 354 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 DFNA5O60443 496 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 C1GALT1C1LP0DN25 315 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 CD79AP11912 226 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 SQSTM1Q13501 440 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 FNDC8Q8TC99 324 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 GLYATL1Q969I3 302 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 METTL2AQ96IZ6 378 aaKnown RBP12.06□□□□□ -0.48
SDC3-201ENST00000336798 KATNBL1Q9H079 304 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 PPP1R14DQ9NXH3 145 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 DLGAP1O14490 977 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 GALNT2Q10471 571 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 PAFAH1B3Q15102 231 aaKnown RBP12.06□□□□□ -0.48
SDC3-201ENST00000336798 PPA1Q15181 289 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 KCTD18Q6PI47 426 aaPredicted RBP12.06□□□□□ -0.48
SDC3-201ENST00000336798 LRRC25Q8N386 305 aaPredicted RBP12.06□□□□□ -0.48
SDC3-201ENST00000336798 OR10T2Q8NGX3 314 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 BBS10Q8TAM1 723 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 IGSF21Q96ID5 467 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 ZNF225Q9UK10 706 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 PYCR1P32322 319 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 AKR1C2P52895 323 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 TBRG1Q3YBR2 411 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 GID4Q8IVV7 300 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 ASB15Q8WXK1 588 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 HOXB13Q92826 284 aaPredicted RBP12.06□□□□□ -0.48
SDC3-201ENST00000336798 FCRL3Q96P31 734 aaPredicted RBP12.06□□□□□ -0.48
SDC3-201ENST00000336798 OR2B2Q9GZK3 357 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 CWH43Q9H720 699 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 C5AR2Q9P296 337 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 RNF215Q9Y6U7 377 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 BORCS7-ASMTA0A0B4J1R7 106 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 SNAP29O95721 258 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 PLEKHS1Q5SXH7 462 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 AWAT2Q6E213 333 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 TEX19Q8NA77 164 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 OR9K2Q8NGE7 335 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms