RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 TMEM9Q9P0T7 183 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 PCDHGA4Q9Y5G9 962 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 TMEM14AQ9Y6G1 99 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 SLC9B1P1A6NJY1 282 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 NME4O00746 187 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 VILLO15195 856 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 OR6B1O95007 311 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 OXSR1O95747 527 aaPredicted RBP6.52□□□□□ -1.37
SF3B1-201ENST00000335508 BLMHQ13867 455 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 DGCR6Q14129 220 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 LIN52Q52LA3 116 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 UBAP2Q5T6F2 1119 aaKnown RBP6.52□□□□□ -1.37
SF3B1-201ENST00000335508 CYHR1Q6ZMK1 362 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 LAPTM4BQ86VI4 370 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 MFSD9Q8NBP5 474 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 ZNF740Q8NDX6 193 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 OR5AK3PQ8NH89 298 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 HAVCR2Q8TDQ0 301 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 PDXPQ96GD0 296 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 CDC6Q99741 560 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 SERHL2Q9H4I8 314 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 ZNF304Q9HCX3 659 aa6.52□□□□□ -1.37
SF3B1-201ENST00000335508 CRNNQ9UBG3 495 aaPredicted RBP6.52□□□□□ -1.37
SF3B1-201ENST00000335508 hCG_2039718K7EN88 272 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 FAAHO00519 579 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 CTNSO60931 367 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 NCK1P16333 377 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 SHC2P98077 582 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 CSTF1Q05048 431 aaKnown RBP6.51□□□□□ -1.37
SF3B1-201ENST00000335508 PLCXD2Q0VAA5 305 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 GPR18Q14330 331 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 IQCCQ4KMZ1 466 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 C17orf50Q8WW18 174 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 TMCO6Q96DC7 493 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 POM121Q96HA1 1249 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 TMEM19Q96HH6 336 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 EPG5Q9HCE0 2579 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 GLOD5A6NK44 160 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 LATO43561 262 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 EGFP01133 1207 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 OPN1SWP03999 348 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 T-ENOLP0DO92 83 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 DRD3P35462 400 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 GPR143P51810 404 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 EIF3IQ13347 325 aaKnown RBP6.51□□□□□ -1.37
SF3B1-201ENST00000335508 TUBB3Q13509 450 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 KCTD21Q4G0X4 260 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 PRAMEF8Q5VWM4 474 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 PRAMEF7Q5VXH5 474 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 KIAA0907Q7Z7F0 614 aaPredicted RBP6.51□□□□□ -1.37
SF3B1-201ENST00000335508 RETREG3Q86VR2 466 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 OR4K5Q8NGD3 323 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 OR2A1Q8NGT9 310 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 OR52J3Q8NH60 311 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 PHOSPHO1Q8TCT1 267 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 LRTOMTQ8WZ04 291 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 EZH1Q92800 747 aaPredicted RBP6.51□□□□□ -1.37
SF3B1-201ENST00000335508 TMBIM1Q969X1 311 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 ALPK1Q96QP1 1244 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 PRRG4Q9BZD6 226 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 ADAMTS6Q9UKP5 1117 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 TSC22D4Q9Y3Q8 395 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 LRRC42Q9Y546 428 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 A0A0U1RQS6 177 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 CENPXA8MT69 81 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 ZNF749O43361 778 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 DCKP27707 260 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 MNX1P50219 401 aaPredicted RBP6.51□□□□□ -1.37
SF3B1-201ENST00000335508 TUBA4AP68366 448 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 ATP6AP1Q15904 470 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 SLC27A4Q6P1M0 643 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 CXXC5Q7LFL8 322 aaKnown RBP6.51□□□□□ -1.37
SF3B1-201ENST00000335508 OAFQ86UD1 273 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 HORMAD2Q8N7B1 307 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 SFXN5Q8TD22 340 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 DNAJA4Q8WW22 397 aaPredicted RBP6.51□□□□□ -1.37
SF3B1-201ENST00000335508 FCRL4Q96PJ5 515 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 COPS4Q9BT78 406 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 SLC6A16Q9GZN6 736 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 KCNK13Q9HB14 408 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 PCDH17O14917 1159 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 ARAFP10398 606 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 KIR2DL1P43626 348 aaPredicted RBP6.51□□□□□ -1.37
SF3B1-201ENST00000335508 GPR153Q6NV75 609 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 KCT2Q8NC54 265 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 AP3S1Q92572 193 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 UCK2Q9BZX2 261 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 FOXQ1Q9C009 403 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 CLMPQ9H6B4 373 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 PTGFRNQ9P2B2 879 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 SEC14L4Q9UDX3 406 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 PLAGL1Q9UM63 463 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 DIDO1Q9BTC0 2240 aaKnown RBP6.51□□□□□ -1.37
SF3B1-201ENST00000335508 ANKRD28O15084 1053 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 SLC35E2P0CK97 266 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 MATN1P21941 496 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 SLC6A6P31641 620 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 CAPZBP47756 277 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 GBX1Q14549 363 aa6.51□□□□□ -1.37
SF3B1-201ENST00000335508 FLYWCH1Q4VC44 716 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms