RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 COX19Q49B96 90 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 ZNF678Q5SXM1 525 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 B3GNTL1Q67FW5 361 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-201ENST00000303395 GLT8D1Q68CQ7 371 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 PRSS55Q6UWB4 352 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-201ENST00000303395 CYP4V2Q6ZWL3 525 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-201ENST00000303395 CDH26Q8IXH8 852 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 ADGRG5Q8IZF4 528 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 B3GNT7Q8NFL0 401 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 SLC22A8Q8TCC7 542 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 LPIN3Q9BQK8 851 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 PNO1Q9NRX1 252 aaKnown RBP5.03□□□□□ -1.6
SCN1A-201ENST00000303395 NLE1Q9NVX2 485 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-201ENST00000303395 TMEM248Q9NWD8 314 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 RNF181Q9P0P0 153 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 MRPS17Q9Y2R5 130 aaKnown RBP5.03□□□□□ -1.6
SCN1A-201ENST00000303395 GXYLT2A0PJZ3 443 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 PRAMEF22A3QJZ6 481 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 GIPP09681 153 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-201ENST00000303395 LAMP2P13473 410 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 ZNF26P17031 533 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-201ENST00000303395 CKMT2P17540 419 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 PMPCAQ10713 525 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 SPP2Q13103 211 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 CRHR2Q13324 411 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 RNASE10Q5GAN6 216 aaKnown RBP5.03□□□□□ -1.6
SCN1A-201ENST00000303395 C6orf136Q5SQH8 315 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 CD163Q86VB7 1156 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 ARNTL2Q8WYA1 636 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 TRIM43Q96BQ3 446 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-201ENST00000303395 NTMT1Q9BV86 223 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 SPATC1LQ9H0A9 340 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 SDHAF2Q9NX18 166 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 SDK2Q58EX2 2172 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 TRAV19A0A0A6YYK7 116 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 HSFX4A0A1B0GTS1 333 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-201ENST00000303395 HSFX3A0A1B0GWH4 333 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-201ENST00000303395 LACTBL1A8MY62 500 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 ARVCFO00192 962 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 RNASET2O00584 256 aaKnown RBP5.03□□□□□ -1.6
SCN1A-201ENST00000303395 CAPN5O15484 640 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-201ENST00000303395 AQP8O94778 261 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 SLC35G4P0C7Q5 338 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 GABRA5P31644 462 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 STT3AP46977 705 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 GINS1Q14691 196 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 PAN2Q504Q3 1202 aaKnown RBP5.03□□□□□ -1.6
SCN1A-201ENST00000303395 CYB5R2Q6BCY4 276 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 MAMDC4Q6UXC1 1216 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 TMPRSS7Q7RTY8 843 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 NXPE1Q8N323 547 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 C10orf90Q96M02 699 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 SECISBP2Q96T21 854 aaKnown RBP5.03□□□□□ -1.6
SCN1A-201ENST00000303395 ACTL8Q9H568 366 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 SEMA4BQ9NPR2 832 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-201ENST00000303395 MSI1O43347 362 aaKnown RBP5.03□□□□□ -1.6
SCN1A-201ENST00000303395 ITGA5P08648 1049 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 TPT1P13693 172 aaKnown RBP5.03□□□□□ -1.6
SCN1A-201ENST00000303395 PRKCAP17252 672 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 KDELR2P33947 212 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 CPOXP36551 454 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 GPR143P51810 404 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 LUMP51884 338 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-201ENST00000303395 TMEM62Q0P6H9 643 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 NAE1Q13564 534 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 CEACAM7Q14002 265 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 CRTC2Q53ET0 693 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-201ENST00000303395 RAET1GQ6H3X3 334 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 ZCCHC23Q6ZST2 131 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 IQCHQ86VS3 1027 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 AMZ2Q86W34 360 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 SLC35F3Q8IY50 421 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 ELP4Q96EB1 424 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 PPM1MQ96MI6 270 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 AGO3Q9H9G7 860 aaKnown RBP5.03□□□□□ -1.6
SCN1A-201ENST00000303395 C1GALT1Q9NS00 363 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 ACOXLQ9NUZ1 547 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 PCTPQ9UKL6 214 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 PRKAB1Q9Y478 270 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 LAMB2P55268 1798 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 TRDV1A0A1B0GX56 115 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 RAD51DO75771 328 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 PIAS1O75925 651 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 RENP00797 406 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 HBE1P02100 147 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 RAF1P04049 648 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 CDK1P06493 297 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 UCHL1P09936 223 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 FMO4P31512 558 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 ARHGAP1Q07960 439 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 ABRAXAS2Q15018 415 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 FAM174BQ3ZCQ3 159 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 DUSP28Q4G0W2 176 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 GK5Q6ZS86 529 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 THOC6Q86W42 341 aaKnown RBP5.03□□□□□ -1.6
SCN1A-201ENST00000303395 MIB1Q86YT6 1006 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 RASGRP3Q8IV61 690 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 ZNF321PQ8N8H1 164 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 OLIG1Q8TAK6 271 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 CD300LFQ8TDQ1 290 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms