RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 NUDT18Q6ZVK8 323 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 DGLUCYQ7Z3D6 616 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 WDR53Q7Z5U6 358 aaPredicted RBP18.97■□□□□ 0.63
VPS53-201ENST00000291074 MFSD4AQ8N468 514 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 CHPT1Q8WUD6 406 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 ZNF764Q96H86 408 aaPredicted RBP18.97■□□□□ 0.63
VPS53-201ENST00000291074 DCSTAMPQ9H295 470 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 RNF167Q9H6Y7 350 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 ANKRA2Q9H9E1 313 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 PRDM7Q9NQW5 492 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 REV1Q9UBZ9 1251 aa18.97■□□□□ 0.63
VPS53-201ENST00000291074 TBC1D3DA0A087WVF3 549 aa18.96■□□□□ 0.63
VPS53-201ENST00000291074 TBC1D3IA0A087WXS9 549 aa18.96■□□□□ 0.63
VPS53-201ENST00000291074 TBC1D3EA0A087X179 549 aa18.96■□□□□ 0.63
VPS53-201ENST00000291074 TBC1D3KA0A087X1G2 549 aa18.96■□□□□ 0.63
VPS53-201ENST00000291074 TBC1D3FA6NER0 549 aaPredicted RBP18.96■□□□□ 0.63
VPS53-201ENST00000291074 TBC1D3LB9A6J9 549 aa18.96■□□□□ 0.63
VPS53-201ENST00000291074 PLRG1O43660 514 aaKnown RBP18.96■□□□□ 0.63
VPS53-201ENST00000291074 NARSO43776 548 aaKnown RBP18.96■□□□□ 0.63
VPS53-201ENST00000291074 COQ9O75208 318 aa18.96■□□□□ 0.63
VPS53-201ENST00000291074 NME6O75414 186 aaPredicted RBP18.96■□□□□ 0.63
VPS53-201ENST00000291074 H1F0P07305 194 aaKnown RBP18.96■□□□□ 0.63
VPS53-201ENST00000291074 TBC1D3HP0C7X1 549 aa18.96■□□□□ 0.63
VPS53-201ENST00000291074 DRD2P14416 443 aa18.96■□□□□ 0.63
VPS53-201ENST00000291074 DDX5P17844 614 aaKnown RBP18.96■□□□□ 0.63
VPS53-201ENST00000291074 MAGEA10P43363 369 aaPredicted RBP18.96■□□□□ 0.63
VPS53-201ENST00000291074 ADPRHP54922 357 aa18.96■□□□□ 0.63
VPS53-201ENST00000291074 RGS21Q2M5E4 152 aa18.96■□□□□ 0.63
VPS53-201ENST00000291074 DCST1Q5T197 706 aa18.96■□□□□ 0.63
VPS53-201ENST00000291074 TBC1D3GQ6DHY5 549 aa18.96■□□□□ 0.63
VPS53-201ENST00000291074 TBC1D3CQ6IPX1 549 aa18.96■□□□□ 0.63
VPS53-201ENST00000291074 CCDC116Q8IYX3 515 aa18.96■□□□□ 0.63
VPS53-201ENST00000291074 TBC1D3Q8IZP1 549 aaPredicted RBP18.96■□□□□ 0.63
VPS53-201ENST00000291074 ACOT4Q8N9L9 421 aa18.96■□□□□ 0.63
VPS53-201ENST00000291074 OR6Q1Q8NGQ2 317 aa18.96■□□□□ 0.63
VPS53-201ENST00000291074 CNRIP1Q96F85 164 aaPredicted RBP18.96■□□□□ 0.63
VPS53-201ENST00000291074 ZNF607Q96SK3 696 aa18.96■□□□□ 0.63
VPS53-201ENST00000291074 DSPPQ9NZW4 1301 aa18.96■□□□□ 0.63
VPS53-201ENST00000291074 CA5BQ9Y2D0 317 aa18.96■□□□□ 0.63
VPS53-201ENST00000291074 ASB4Q9Y574 426 aa18.96■□□□□ 0.63
VPS53-201ENST00000291074 HSMCR30P0CW71 290 aa18.96■□□□□ 0.63
VPS53-201ENST00000291074 HIST1H1TP22492 207 aaPredicted RBP18.96■□□□□ 0.63
VPS53-201ENST00000291074 GRK3P35626 688 aa18.96■□□□□ 0.63
VPS53-201ENST00000291074 FUT5Q11128 374 aa18.96■□□□□ 0.63
VPS53-201ENST00000291074 DOC2BQ14184 412 aa18.96■□□□□ 0.63
VPS53-201ENST00000291074 LRRC32Q14392 662 aa18.96■□□□□ 0.63
VPS53-201ENST00000291074 LASP1Q14847 261 aaKnown RBP18.96■□□□□ 0.63
VPS53-201ENST00000291074 PERM1Q5SV97 790 aa18.96■□□□□ 0.63
VPS53-201ENST00000291074 ABHD17CQ6PCB6 329 aa18.96■□□□□ 0.63
VPS53-201ENST00000291074 CACTIN-AS1Q8N1I8 211 aa18.96■□□□□ 0.63
VPS53-201ENST00000291074 MVB12BQ9H7P6 319 aa18.96■□□□□ 0.63
VPS53-201ENST00000291074 CTPS2Q9NRF8 586 aa18.96■□□□□ 0.63
VPS53-201ENST00000291074 OSGIN1Q9UJX0 560 aa18.96■□□□□ 0.63
VPS53-201ENST00000291074 AIFM1O95831 613 aa18.95■□□□□ 0.62
VPS53-201ENST00000291074 HNRNPCP07910 306 aaKnown RBP eCLIP18.95■□□□□ 0.621e-6■■□□□ 11.4
VPS53-201ENST00000291074 COL9A1P20849 921 aa18.95■□□□□ 0.62
VPS53-201ENST00000291074 NTSP30990 170 aa18.95■□□□□ 0.62
VPS53-201ENST00000291074 SERPINB10P48595 397 aa18.95■□□□□ 0.62
VPS53-201ENST00000291074 CLDN2P57739 230 aa18.95■□□□□ 0.62
VPS53-201ENST00000291074 TRA2BP62995 288 aaKnown RBP18.95■□□□□ 0.62
VPS53-201ENST00000291074 MLC1Q15049 377 aa18.95■□□□□ 0.62
VPS53-201ENST00000291074 INAQ16352 499 aa18.95■□□□□ 0.62
VPS53-201ENST00000291074 SLC46A3Q7Z3Q1 461 aa18.95■□□□□ 0.62
VPS53-201ENST00000291074 SUN3Q8TAQ9 357 aa18.95■□□□□ 0.62
VPS53-201ENST00000291074 SLC7A13Q8TCU3 470 aa18.95■□□□□ 0.62
VPS53-201ENST00000291074 FCRL4Q96PJ5 515 aa18.95■□□□□ 0.62
VPS53-201ENST00000291074 TRMT61BQ9BVS5 477 aaKnown RBP18.95■□□□□ 0.62
VPS53-201ENST00000291074 FAIM2Q9BWQ8 316 aa18.95■□□□□ 0.62
VPS53-201ENST00000291074 UCK2Q9BZX2 261 aa18.95■□□□□ 0.62
VPS53-201ENST00000291074 TBCCD1Q9NVR7 557 aa18.95■□□□□ 0.62
VPS53-201ENST00000291074 DOLKQ9UPQ8 538 aa18.95■□□□□ 0.62
VPS53-201ENST00000291074 B3GNT3Q9Y2A9 372 aa18.95■□□□□ 0.62
VPS53-201ENST00000291074 GPC6Q9Y625 555 aaPredicted RBP18.95■□□□□ 0.62
VPS53-201ENST00000291074 SCN2AQ99250 2005 aa18.95■□□□□ 0.62
VPS53-201ENST00000291074 TMEM247A6NEH6 219 aa18.95■□□□□ 0.62
VPS53-201ENST00000291074 POM121BA6NF01 834 aa18.95■□□□□ 0.62
VPS53-201ENST00000291074 ADAP00813 363 aa18.95■□□□□ 0.62
VPS53-201ENST00000291074 CHRM4P08173 479 aa18.95■□□□□ 0.62
VPS53-201ENST00000291074 ATP5A1P25705 553 aaKnown RBP18.95■□□□□ 0.62
VPS53-201ENST00000291074 LSM11P83369 360 aaKnown RBP eCLIP18.95■□□□□ 0.62
VPS53-201ENST00000291074 IFITM3Q01628 133 aa18.95■□□□□ 0.62
VPS53-201ENST00000291074 TMEM35AQ53FP2 167 aa18.95■□□□□ 0.62
VPS53-201ENST00000291074 TMEM107Q6UX40 140 aa18.95■□□□□ 0.62
VPS53-201ENST00000291074 RBM12BQ8IXT5 1001 aaKnown RBP18.95■□□□□ 0.62
VPS53-201ENST00000291074 TTLQ8NG68 377 aa18.95■□□□□ 0.62
VPS53-201ENST00000291074 OR5M11Q96RB7 305 aa18.95■□□□□ 0.62
VPS53-201ENST00000291074 RAB11FIP5Q9BXF6 653 aa18.95■□□□□ 0.62
VPS53-201ENST00000291074 WDR12Q9GZL7 423 aaKnown RBP18.95■□□□□ 0.62
VPS53-201ENST00000291074 QRSL1Q9H0R6 528 aaKnown RBP18.95■□□□□ 0.62
VPS53-201ENST00000291074 OR51E2Q9H255 320 aa18.95■□□□□ 0.62
VPS53-201ENST00000291074 CD93Q9NPY3 652 aa18.95■□□□□ 0.62
VPS53-201ENST00000291074 APOBEC3BQ9UH17 382 aaKnown RBP18.95■□□□□ 0.62
VPS53-201ENST00000291074 LOC100506127A0A0U1RQW1 187 aa18.94■□□□□ 0.62
VPS53-201ENST00000291074 EPPINO95925 133 aa18.94■□□□□ 0.62
VPS53-201ENST00000291074 GSTM5P46439 218 aa18.94■□□□□ 0.62
VPS53-201ENST00000291074 SNRPNP63162 240 aaKnown RBP18.94■□□□□ 0.62
VPS53-201ENST00000291074 TEKQ02763 1124 aa18.94■□□□□ 0.62
VPS53-201ENST00000291074 TBC1D19Q8N5T2 526 aa18.94■□□□□ 0.62
VPS53-201ENST00000291074 C16orf58Q96GQ5 468 aa18.94■□□□□ 0.62
VPS53-201ENST00000291074 NKX2-4Q9H2Z4 354 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms