RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 LAMP1P11279 417 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 CLCN2P51788 898 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 C18orf21Q32NC0 220 aaPredicted RBP17.66■□□□□ 0.42
PCDH1-201ENST00000287008 TMEM80Q96HE8 168 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 SLC45A3Q96JT2 553 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 TIMM29Q9BSF4 260 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 MARCH5Q9NX47 278 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 MTMR10Q9NXD2 777 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 STOML2Q9UJZ1 356 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 LRRC42Q9Y546 428 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 MYO18AQ92614 2054 aaKnown RBP17.65■□□□□ 0.42
PCDH1-201ENST00000287008 DPPA5A6NC42 116 aa17.65■□□□□ 0.42
PCDH1-201ENST00000287008 TEX46H3BTG2 121 aa17.65■□□□□ 0.42
PCDH1-201ENST00000287008 F3P13726 295 aa17.65■□□□□ 0.42
PCDH1-201ENST00000287008 FOLR3P41439 243 aa17.65■□□□□ 0.42
PCDH1-201ENST00000287008 NFATC4Q14934 902 aa17.65■□□□□ 0.42
PCDH1-201ENST00000287008 DNAJA3Q96EY1 480 aa17.65■□□□□ 0.42
PCDH1-201ENST00000287008 PRR11Q96HE9 360 aaPredicted RBP17.65■□□□□ 0.42
PCDH1-201ENST00000287008 CPNE7Q9UBL6 633 aa17.65■□□□□ 0.42
PCDH1-201ENST00000287008 SH3PXD2BA1X283 911 aa17.65■□□□□ 0.42
PCDH1-201ENST00000287008 H3BSH0 61 aa17.65■□□□□ 0.42
PCDH1-201ENST00000287008 F11P03951 625 aa17.65■□□□□ 0.42
PCDH1-201ENST00000287008 RGRP47804 291 aa17.65■□□□□ 0.42
PCDH1-201ENST00000287008 RNF144AP50876 292 aaPredicted RBP17.65■□□□□ 0.42
PCDH1-201ENST00000287008 NR0B2Q15466 257 aa17.65■□□□□ 0.42
PCDH1-201ENST00000287008 SLC14A2Q15849 920 aa17.65■□□□□ 0.42
PCDH1-201ENST00000287008 METTL2BQ6P1Q9 378 aaKnown RBP17.65■□□□□ 0.42
PCDH1-201ENST00000287008 OR52E1Q8NGJ3 308 aa17.65■□□□□ 0.42
PCDH1-201ENST00000287008 MROQ9BYG7 248 aa17.65■□□□□ 0.42
PCDH1-201ENST00000287008 LOC285095A0A1B0GVY8 99 aa17.65■□□□□ 0.42
PCDH1-201ENST00000287008 GXYLT2A0PJZ3 443 aa17.65■□□□□ 0.42
PCDH1-201ENST00000287008 PRSS38A1L453 326 aa17.65■□□□□ 0.42
PCDH1-201ENST00000287008 ARHGEF15O94989 841 aa17.65■□□□□ 0.42
PCDH1-201ENST00000287008 H2BFMP0C1H6 154 aa17.65■□□□□ 0.42
PCDH1-201ENST00000287008 ETFAP13804 333 aa17.65■□□□□ 0.42
PCDH1-201ENST00000287008 MSANTD1Q6ZTZ1 278 aa17.65■□□□□ 0.42
PCDH1-201ENST00000287008 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.65■□□□□ 0.42
PCDH1-201ENST00000287008 MINDY1Q8N5J2 469 aa17.65■□□□□ 0.42
PCDH1-201ENST00000287008 OR2L2Q8NH16 312 aa17.65■□□□□ 0.42
PCDH1-201ENST00000287008 TMEM41AQ96HV5 264 aa17.65■□□□□ 0.42
PCDH1-201ENST00000287008 DPH2Q9BQC3 489 aaPredicted RBP17.65■□□□□ 0.42
PCDH1-201ENST00000287008 MTHFD2LQ9H903 347 aaPredicted RBP17.65■□□□□ 0.42
PCDH1-201ENST00000287008 EXOSC1Q9Y3B2 195 aaKnown RBP17.65■□□□□ 0.42
PCDH1-201ENST00000287008 NUAK1O60285 661 aa17.64■□□□□ 0.42
PCDH1-201ENST00000287008 ZNF432O94892 652 aa17.64■□□□□ 0.42
PCDH1-201ENST00000287008 CSN2P05814 226 aa17.64■□□□□ 0.42
PCDH1-201ENST00000287008 FAM189BP81408 668 aa17.64■□□□□ 0.42
PCDH1-201ENST00000287008 CLCA4Q14CN2 919 aa17.64■□□□□ 0.42
PCDH1-201ENST00000287008 CLECL1Q8IZS7 167 aa17.64■□□□□ 0.42
PCDH1-201ENST00000287008 CREB3L4Q8TEY5 395 aa17.64■□□□□ 0.42
PCDH1-201ENST00000287008 SARDHQ9UL12 918 aa17.64■□□□□ 0.42
PCDH1-201ENST00000287008 HS3ST2Q9Y278 367 aa17.64■□□□□ 0.42
PCDH1-201ENST00000287008 A0A0A6YYC8 382 aaPredicted RBP17.64■□□□□ 0.41
PCDH1-201ENST00000287008 I3L1I5 382 aaPredicted RBP17.64■□□□□ 0.41
PCDH1-201ENST00000287008 RHCEP18577 417 aa17.64■□□□□ 0.41
PCDH1-201ENST00000287008 RCAN2Q14206 197 aa17.64■□□□□ 0.41
PCDH1-201ENST00000287008 SLC36A3Q495N2 470 aa17.64■□□□□ 0.41
PCDH1-201ENST00000287008 CDRT4Q8N9R6 151 aa17.64■□□□□ 0.41
PCDH1-201ENST00000287008 OR52N2Q8NGI0 321 aa17.64■□□□□ 0.41
PCDH1-201ENST00000287008 ARRDC2Q8TBH0 407 aa17.64■□□□□ 0.41
PCDH1-201ENST00000287008 TMEM19Q96HH6 336 aa17.64■□□□□ 0.41
PCDH1-201ENST00000287008 ACTRT3Q9BYD9 372 aa17.64■□□□□ 0.41
PCDH1-201ENST00000287008 LRIT1Q9P2V4 623 aa17.64■□□□□ 0.41
PCDH1-201ENST00000287008 DKK3Q9UBP4 350 aa17.64■□□□□ 0.41
PCDH1-201ENST00000287008 SLC9B1P1A6NJY1 282 aa17.64■□□□□ 0.41
PCDH1-201ENST00000287008 ZNF140P52738 457 aaPredicted RBP17.64■□□□□ 0.41
PCDH1-201ENST00000287008 TUBB3Q13509 450 aa17.64■□□□□ 0.41
PCDH1-201ENST00000287008 MYLIPQ8WY64 445 aa17.64■□□□□ 0.41
PCDH1-201ENST00000287008 APIPQ96GX9 242 aa17.64■□□□□ 0.41
PCDH1-201ENST00000287008 UBR2Q8IWV8 1755 aa17.64■□□□□ 0.41
PCDH1-201ENST00000287008 NR0B1P51843 470 aaKnown RBP17.64■□□□□ 0.41
PCDH1-201ENST00000287008 CDH15P55291 814 aa17.64■□□□□ 0.41
PCDH1-201ENST00000287008 YPEL5P62699 121 aa17.64■□□□□ 0.41
PCDH1-201ENST00000287008 KCNAB2Q13303 367 aa17.64■□□□□ 0.41
PCDH1-201ENST00000287008 GAS6Q14393 721 aa17.64■□□□□ 0.41
PCDH1-201ENST00000287008 MCATQ8IVS2 390 aaKnown RBP17.64■□□□□ 0.41
PCDH1-201ENST00000287008 NLGN4XQ8N0W4 816 aa17.64■□□□□ 0.41
PCDH1-201ENST00000287008 SCGB3A2Q96PL1 93 aa17.64■□□□□ 0.41
PCDH1-201ENST00000287008 SRA1Q9HD15 236 aaKnown RBP17.64■□□□□ 0.41
PCDH1-201ENST00000287008 MEMO1Q9Y316 297 aa17.64■□□□□ 0.41
PCDH1-201ENST00000287008 TEX13CA0A0J9YWL9 993 aa17.63■□□□□ 0.41
PCDH1-201ENST00000287008 ANTXRLA6NF34 631 aa17.63■□□□□ 0.41
PCDH1-201ENST00000287008 UNC119BA6NIH7 251 aa17.63■□□□□ 0.41
PCDH1-201ENST00000287008 MEP1AQ16819 746 aa17.63■□□□□ 0.41
PCDH1-201ENST00000287008 OR14L1PQ8NHC6 308 aa17.63■□□□□ 0.41
PCDH1-201ENST00000287008 GAL3ST3Q96A11 431 aa17.63■□□□□ 0.41
PCDH1-201ENST00000287008 BRF2Q9HAW0 419 aa17.63■□□□□ 0.41
PCDH1-201ENST00000287008 C5AR2Q9P296 337 aa17.63■□□□□ 0.41
PCDH1-201ENST00000287008 GFRA2O00451 464 aa17.63■□□□□ 0.41
PCDH1-201ENST00000287008 RDH16O75452 317 aa17.63■□□□□ 0.41
PCDH1-201ENST00000287008 MAD2L1BPQ15013 274 aaPredicted RBP17.63■□□□□ 0.41
PCDH1-201ENST00000287008 CDKN3Q16667 212 aa17.63■□□□□ 0.41
PCDH1-201ENST00000287008 ZFP69Q49AA0 526 aa17.63■□□□□ 0.41
PCDH1-201ENST00000287008 PKDCCQ504Y2 493 aa17.63■□□□□ 0.41
PCDH1-201ENST00000287008 ALG10BQ5I7T1 473 aa17.63■□□□□ 0.41
PCDH1-201ENST00000287008 KANK2Q63ZY3 851 aa17.63■□□□□ 0.41
PCDH1-201ENST00000287008 KIAA0895LQ68EN5 471 aa17.63■□□□□ 0.41
PCDH1-201ENST00000287008 GPR137CQ8N3F9 429 aa17.63■□□□□ 0.41
PCDH1-201ENST00000287008 EDAQ92838 391 aa17.63■□□□□ 0.41
PCDH1-201ENST00000287008 SLC22A12Q96S37 553 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms