RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 CAV3P56539 151 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 PDE7AQ13946 482 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 GAB4Q2WGN9 574 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 PIP5KL1Q5T9C9 394 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 STEAP3Q658P3 488 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 PGBD3Q8N328 593 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 CPA6Q8N4T0 437 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 OR10G6Q8NH81 332 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 RNF31Q96EP0 1072 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 FNDC11Q9BVV2 318 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 BTBD2Q9BX70 525 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 DPEP2Q9H4A9 486 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 FBXL12Q9NXK8 326 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 MKLN1Q9UL63 735 aa15.74■□□□□ 0.11
VPS54-201ENST00000272322 IGKV1-8A0A0C4DH67 115 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 KIAA0355O15063 1070 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 UGT2B17O75795 530 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 CSNK1G2P78368 415 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 OXA1LQ15070 435 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 OR2G6Q5TZ20 316 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 CAMKMTQ7Z624 323 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 DEPDC4Q8N2C3 294 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 CDADC1Q9BWV3 514 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 UCK2Q9BZX2 261 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 SIRT3Q9NTG7 399 aaPredicted RBP15.73■□□□□ 0.11
VPS54-201ENST00000272322 STON1Q9Y6Q2 735 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 HSPE1-MOB4S4R3N1 261 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 A8MV72 311 aaPredicted RBP15.73■□□□□ 0.11
VPS54-201ENST00000272322 ACVR2AP27037 513 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 PDGFRLQ15198 375 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 CST6Q15828 149 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 PODNL1Q6PEZ8 512 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 SFTPA2Q8IWL1 248 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 DTX3Q8N9I9 347 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 OR9Q1Q8NGQ5 310 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 SLC9A6Q92581 669 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 RGMAQ96B86 450 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 ZBED6CLQ96FA7 236 aaPredicted RBP15.73■□□□□ 0.11
VPS54-201ENST00000272322 ZNF514Q96K75 400 aaPredicted RBP15.73■□□□□ 0.11
VPS54-201ENST00000272322 SLC35G5Q96KT7 338 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 POLR2J2Q9GZM3 115 aaKnown RBP15.73■□□□□ 0.11
VPS54-201ENST00000272322 EHD3Q9NZN3 535 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 TFECO14948 347 aaPredicted RBP15.73■□□□□ 0.11
VPS54-201ENST00000272322 ELAVL4P26378 380 aaKnown RBP15.73■□□□□ 0.11
VPS54-201ENST00000272322 SERPINB1P30740 379 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 GRK3P35626 688 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 BCL6P41182 706 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 MAGEA10P43363 369 aaPredicted RBP15.73■□□□□ 0.11
VPS54-201ENST00000272322 TFF2Q03403 129 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 LRRC32Q14392 662 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 ZNF658BQ4V348 819 aaPredicted RBP15.73■□□□□ 0.11
VPS54-201ENST00000272322 ZNF542PQ5EBM4 170 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 SLC46A3Q7Z3Q1 461 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 ZNF761Q86XN6 746 aaPredicted RBP15.73■□□□□ 0.11
VPS54-201ENST00000272322 Q8N9G6 341 aaPredicted RBP15.73■□□□□ 0.11
VPS54-201ENST00000272322 AICDAQ9GZX7 198 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 POU2F3Q9UKI9 436 aa15.73■□□□□ 0.11
VPS54-201ENST00000272322 ARHGEF17Q96PE2 2063 aaPredicted RBP15.73■□□□□ 0.11
VPS54-201ENST00000272322 A0A1W2PQU0 124 aa15.72■□□□□ 0.11
VPS54-201ENST00000272322 HAT1O14929 419 aa15.72■□□□□ 0.11
VPS54-201ENST00000272322 TMED10P49755 219 aaKnown RBP15.72■□□□□ 0.11
VPS54-201ENST00000272322 PCBP3P57721 371 aaKnown RBP15.72■□□□□ 0.11
VPS54-201ENST00000272322 RBBP4Q09028 425 aa15.72■□□□□ 0.11
VPS54-201ENST00000272322 ZMAT1Q5H9K5 638 aa15.72■□□□□ 0.11
VPS54-201ENST00000272322 CRB2Q5IJ48 1285 aa15.72■□□□□ 0.11
VPS54-201ENST00000272322 METRNLQ641Q3 311 aa15.72■□□□□ 0.11
VPS54-201ENST00000272322 NIPAL1Q6NVV3 410 aa15.72■□□□□ 0.11
VPS54-201ENST00000272322 VRK2Q86Y07 508 aa15.72■□□□□ 0.11
VPS54-201ENST00000272322 KLHDC8AQ8IYD2 350 aa15.72■□□□□ 0.11
VPS54-201ENST00000272322 AMER2Q8N7J2 671 aa15.72■□□□□ 0.11
VPS54-201ENST00000272322 FLCNQ8NFG4 579 aa15.72■□□□□ 0.11
VPS54-201ENST00000272322 WFIKKN2Q8TEU8 576 aa15.72■□□□□ 0.11
VPS54-201ENST00000272322 TMEM38AQ9H6F2 299 aa15.72■□□□□ 0.11
VPS54-201ENST00000272322 A0A1W2PPV9 198 aa15.72■□□□□ 0.11
VPS54-201ENST00000272322 SERTM1A2A2V5 107 aa15.72■□□□□ 0.11
VPS54-201ENST00000272322 DNAJB6O75190 326 aa15.72■□□□□ 0.11
VPS54-201ENST00000272322 EML2O95834 649 aa15.72■□□□□ 0.11
VPS54-201ENST00000272322 CBLP22681 906 aa15.72■□□□□ 0.11
VPS54-201ENST00000272322 MC3RP41968 323 aa15.72■□□□□ 0.11
VPS54-201ENST00000272322 UGT2B15P54855 530 aa15.72■□□□□ 0.11
VPS54-201ENST00000272322 GINS1Q14691 196 aa15.72■□□□□ 0.11
VPS54-201ENST00000272322 SNAPC1Q16533 368 aa15.72■□□□□ 0.11
VPS54-201ENST00000272322 LRRK1Q38SD2 2015 aa15.72■□□□□ 0.11
VPS54-201ENST00000272322 C6orf132Q5T0Z8 1188 aa15.72■□□□□ 0.11
VPS54-201ENST00000272322 OR4C11Q6IEV9 310 aa15.72■□□□□ 0.11
VPS54-201ENST00000272322 TYW3Q6IPR3 259 aaKnown RBP15.72■□□□□ 0.11
VPS54-201ENST00000272322 OR4K5Q8NGD3 323 aa15.72■□□□□ 0.11
VPS54-201ENST00000272322 OR9A2Q8NGT5 310 aa15.72■□□□□ 0.11
VPS54-201ENST00000272322 TRMT61AQ96FX7 289 aaKnown RBP15.72■□□□□ 0.11
VPS54-201ENST00000272322 PDXPQ96GD0 296 aa15.72■□□□□ 0.11
VPS54-201ENST00000272322 MRPS30Q9NP92 439 aaKnown RBP15.72■□□□□ 0.11
VPS54-201ENST00000272322 MALT1Q9UDY8 824 aa15.72■□□□□ 0.11
VPS54-201ENST00000272322 PRKYO43930 277 aa15.71■□□□□ 0.11
VPS54-201ENST00000272322 GPX5O75715 221 aa15.71■□□□□ 0.11
VPS54-201ENST00000272322 FHP07954 510 aa15.71■□□□□ 0.11
VPS54-201ENST00000272322 PORP16435 677 aaPredicted RBP15.71■□□□□ 0.11
VPS54-201ENST00000272322 SSTR4P31391 388 aa15.71■□□□□ 0.11
VPS54-201ENST00000272322 BTN3A2P78410 334 aa15.71■□□□□ 0.11
VPS54-201ENST00000272322 KCNC4Q03721 635 aa15.71■□□□□ 0.11
VPS54-201ENST00000272322 CCNJQ5T5M9 372 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms