RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 CHID1Q9BWS9 393 aa13.25□□□□□ -0.29
SS18-201ENST00000269137 YY1AP1Q9H869 796 aa13.25□□□□□ -0.29
SS18-201ENST00000269137 AGPAT4Q9NRZ5 378 aa13.25□□□□□ -0.29
SS18-201ENST00000269137 ZNF451Q9Y4E5 1061 aa13.25□□□□□ -0.29
SS18-201ENST00000269137 TNFRSF10AO00220 468 aa13.24□□□□□ -0.29
SS18-201ENST00000269137 HMGN4O00479 90 aa13.24□□□□□ -0.29
SS18-201ENST00000269137 CTNSO60931 367 aa13.24□□□□□ -0.29
SS18-201ENST00000269137 LDB3O75112 727 aa13.24□□□□□ -0.29
SS18-201ENST00000269137 GCM2O75603 506 aaPredicted RBP13.24□□□□□ -0.29
SS18-201ENST00000269137 LDOC1O95751 146 aaPredicted RBP13.24□□□□□ -0.29
SS18-201ENST00000269137 GP1BAP07359 652 aa13.24□□□□□ -0.29
SS18-201ENST00000269137 SLC35E2P0CK97 266 aa13.24□□□□□ -0.29
SS18-201ENST00000269137 MC3RP41968 323 aa13.24□□□□□ -0.29
SS18-201ENST00000269137 RPS26P62854 115 aaKnown RBP13.24□□□□□ -0.29
SS18-201ENST00000269137 IGLV3-21P80748 117 aaPredicted RBP13.24□□□□□ -0.29
SS18-201ENST00000269137 MYBPC3Q14896 1274 aa13.24□□□□□ -0.29
SS18-201ENST00000269137 LTB4RQ15722 352 aa13.24□□□□□ -0.29
SS18-201ENST00000269137 TNFAIP8L2Q6P589 184 aaPredicted RBP13.24□□□□□ -0.29
SS18-201ENST00000269137 TTLL10Q6ZVT0 673 aa13.24□□□□□ -0.29
SS18-201ENST00000269137 CBLL1Q75N03 491 aa13.24□□□□□ -0.29
SS18-201ENST00000269137 METTL25Q8N6Q8 603 aa13.24□□□□□ -0.29
SS18-201ENST00000269137 FAM86B1Q8N7N1 296 aa13.24□□□□□ -0.29
SS18-201ENST00000269137 ADCY4Q8NFM4 1077 aa13.24□□□□□ -0.29
SS18-201ENST00000269137 OR51Q1Q8NH59 317 aa13.24□□□□□ -0.29
SS18-201ENST00000269137 ZNF675Q8TD23 568 aa13.24□□□□□ -0.29
SS18-201ENST00000269137 PPWD1Q96BP3 646 aaKnown RBP13.24□□□□□ -0.29
SS18-201ENST00000269137 PEX11GQ96HA9 241 aa13.24□□□□□ -0.29
SS18-201ENST00000269137 CNDP2Q96KP4 475 aaKnown RBP13.24□□□□□ -0.29
SS18-201ENST00000269137 RNF145Q96MT1 663 aa13.24□□□□□ -0.29
SS18-201ENST00000269137 GFM1Q96RP9 751 aaKnown RBP13.24□□□□□ -0.29
SS18-201ENST00000269137 SERHL2Q9H4I8 314 aa13.24□□□□□ -0.29
SS18-201ENST00000269137 PTGFRNQ9P2B2 879 aa13.24□□□□□ -0.29
SS18-201ENST00000269137 TMEM184BQ9Y519 407 aaPredicted RBP13.24□□□□□ -0.29
SS18-201ENST00000269137 LRRC42Q9Y546 428 aa13.24□□□□□ -0.29
SS18-201ENST00000269137 V9GYQ6 96 aa13.24□□□□□ -0.29
SS18-201ENST00000269137 A0A087WV62 115 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 UPK1AO00322 258 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 CLDN4O14493 209 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 DSCR3O14972 297 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 HMGN2P05204 90 aaKnown RBP13.23□□□□□ -0.29
SS18-201ENST00000269137 RPSAP08865 295 aaKnown RBP13.23□□□□□ -0.29
SS18-201ENST00000269137 TFPTP0C1Z6 253 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 ZNF806P0C7X5 589 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 MATN1P21941 496 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 ACP1P24666 158 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 PEX2P28328 305 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 PTGER1P34995 402 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 KHKP50053 298 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 PCBP3P57721 371 aaKnown RBP13.23□□□□□ -0.29
SS18-201ENST00000269137 MAT1AQ00266 395 aaKnown RBP13.23□□□□□ -0.29
SS18-201ENST00000269137 ID2Q02363 134 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 NKG7Q16617 165 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 LRRC23Q53EV4 343 aaPredicted RBP13.23□□□□□ -0.29
SS18-201ENST00000269137 ZNF628Q5EBL2 1059 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 LPCAT4Q643R3 524 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 HMBOX1Q6NT76 420 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 REEP3Q6NUK4 255 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 EIF3MQ7L2H7 374 aaKnown RBP13.23□□□□□ -0.29
SS18-201ENST00000269137 SLITRK4Q8IW52 837 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 OR2L13Q8N349 312 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 CATSPER1Q8NEC5 780 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 NUP43Q8NFH3 380 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 NFKBIDQ8NI38 313 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 KAT2AQ92830 837 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 COL26A1Q96A83 441 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 CENPNQ96H22 339 aaPredicted RBP13.23□□□□□ -0.29
SS18-201ENST00000269137 CCDC74BQ96LY2 380 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 ZNF570Q96NI8 536 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 KLHL4Q9C0H6 718 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 ANGPT4Q9Y264 503 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 COL5A1P20908 1838 aaPredicted RBP13.23□□□□□ -0.29
SS18-201ENST00000269137 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 D6RAR5 112 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 PLOD3O60568 738 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 BMP10O95393 424 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 SOX18P35713 384 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 CRYBA2P53672 197 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 PRKAG1P54619 331 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 HSD17B7P56937 341 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 TRA2AQ13595 282 aaKnown RBP eCLIP13.23□□□□□ -0.29
SS18-201ENST00000269137 ATP6AP1Q15904 470 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 CRB2Q5IJ48 1285 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 SZRD1Q7Z422 152 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 ZC3H7AQ8IWR0 971 aaKnown RBP13.23□□□□□ -0.29
SS18-201ENST00000269137 ANKFN1Q8N957 763 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 OR7G2Q8NG99 324 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 SLC38A5Q8WUX1 472 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 GIMAP5Q96F15 307 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 SLC47A1Q96FL8 570 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 MAGED4Q96JG8 741 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 OR51I1Q9H343 314 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 DDX18Q9NVP1 670 aaKnown RBP13.23□□□□□ -0.29
SS18-201ENST00000269137 C19orf53Q9UNZ5 99 aaPredicted RBP13.23□□□□□ -0.29
SS18-201ENST00000269137 SRPK3Q9UPE1 567 aa13.23□□□□□ -0.29
SS18-201ENST00000269137 ASNA1O43681 348 aa13.22□□□□□ -0.29
SS18-201ENST00000269137 TPST1O60507 370 aa13.22□□□□□ -0.29
SS18-201ENST00000269137 IFNA14P01570 189 aa13.22□□□□□ -0.29
SS18-201ENST00000269137 OR12D1P0DN82 309 aa13.22□□□□□ -0.29
SS18-201ENST00000269137 ALAS2P22557 587 aa13.22□□□□□ -0.29
SS18-201ENST00000269137 XCR1P46094 333 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms