RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 NYNRINQ9P2P1 1898 aaKnown RBP10.95□□□□□ -0.66
VPS4A-201ENST00000254950 CPMP14384 443 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 CDKN2CP42773 168 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 SERPINB10P48595 397 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 MASP1P48740 699 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 NXPH1P58417 271 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 SFT2D3Q587I9 215 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 C18orf63Q68DL7 685 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 VTCN1Q7Z7D3 282 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 LINC01555Q8NAE3 123 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 WDR34Q96EX3 536 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 G6PC3Q9BUM1 346 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 SLC6A20Q9NP91 592 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 RASSF1Q9NS23 344 aa10.95□□□□□ -0.66
VPS4A-201ENST00000254950 KCNE1BA0A087WTH5 132 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 TCRBV3S1A0A5B6 114 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 BLACEA4D250 179 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 KRBA1A5PL33 1030 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 TTC36A6NLP5 189 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 PGM3O95394 542 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 LDOC1O95751 146 aaPredicted RBP10.94□□□□□ -0.66
VPS4A-201ENST00000254950 RPLP0P05388 317 aaKnown RBP10.94□□□□□ -0.66
VPS4A-201ENST00000254950 IGHV4-34P06331 123 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 HSMCR30P0CW71 290 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 NR1H2P55055 460 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 BNC1Q01954 994 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 NCF4Q15080 339 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 PDSS2Q86YH6 399 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 MYDGFQ969H8 173 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 DACH2Q96NX9 599 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 ALPK1Q96QP1 1244 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 MCHR1Q99705 422 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 KLHL31Q9H511 634 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 ZNF385DQ9H6B1 395 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 ZNF304Q9HCX3 659 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 DCAF13Q9NV06 445 aaKnown RBP10.94□□□□□ -0.66
VPS4A-201ENST00000254950 A0A0G2JPF8 293 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 HNRNPCL2B2RXH8 293 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 HNRNPCL3B7ZW38 293 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 B3GALT4O96024 378 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 LYNP07948 512 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 HNRNPCL4P0DMR1 293 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 CCKBRP32239 447 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 TTKP33981 857 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 PTGER1P34995 402 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 GUCA1AP43080 201 aaPredicted RBP10.94□□□□□ -0.66
VPS4A-201ENST00000254950 MAGEA8P43361 318 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 RPL5P46777 297 aaKnown RBP10.94□□□□□ -0.66
VPS4A-201ENST00000254950 CDK9P50750 372 aaKnown RBP10.94□□□□□ -0.66
VPS4A-201ENST00000254950 GPR153Q6NV75 609 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 PAQR7Q86WK9 346 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 OR52P1PQ8NH57 321 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 PRDM6Q9NQX0 595 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 PAPOLBQ9NRJ5 636 aaKnown RBP10.94□□□□□ -0.66
VPS4A-201ENST00000254950 ABCD2Q9UBJ2 740 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 MKL2Q9ULH7 1088 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 SH2B3Q9UQQ2 575 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 FAM86C2PA6NEL3 165 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 TMPRSS11DO60235 418 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 PRAMEF2O60811 474 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 GLB1P16278 677 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 GM2AP17900 193 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 NNATQ16517 81 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 CYP27C1Q4G0S4 372 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 SLC48A1Q6P1K1 146 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 POMZP3Q6PJE2 187 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 C1orf210Q8IVY1 113 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 TMEM151BQ8IW70 566 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 ZNF595Q8IYB9 648 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 AGBL5Q8NDL9 886 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 HMGCLL1Q8TB92 370 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 ZFP90Q8TF47 636 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 NUDT8Q8WV74 236 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 RNF31Q96EP0 1072 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 MRPS26Q9BYN8 205 aaKnown RBP10.94□□□□□ -0.66
VPS4A-201ENST00000254950 RERGLQ9H628 205 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 POMT2Q9UKY4 750 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 POFUT2Q9Y2G5 429 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 LRRC42Q9Y546 428 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 ANGPTL1O95841 491 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 BCKDHBP21953 392 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 FAM219BQ5XKK7 198 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 DLEU7Q6UYE1 221 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 PPP1R3BQ86XI6 285 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 ADGRF3Q8IZF5 1079 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 ANKFN1Q8N957 763 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 ZNF248Q8NDW4 579 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 PMEPA1Q969W9 287 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 COQ8BQ96D53 544 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 LPAR4Q99677 370 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 MKLN1Q9UL63 735 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 ERVK-11Q9UQG0 969 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 HCN4Q9Y3Q4 1203 aa10.94□□□□□ -0.66
VPS4A-201ENST00000254950 PEX12O00623 359 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 IFNGP01579 166 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 TFPIP10646 304 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 PRKACGP22612 351 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 RORAP35398 523 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 BNIP3Q12983 259 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 C6orf132Q5T0Z8 1188 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms