RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 SLC6A1P30531 599 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 PSMA6P60900 246 aaKnown RBP13.94□□□□□ -0.18
PTPRA-201ENST00000216877 SNTB2Q13425 540 aaKnown RBP13.94□□□□□ -0.18
PTPRA-201ENST00000216877 SLC5A12Q1EHB4 618 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 HFEQ30201 348 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 HIST2H2AA3Q6FI13 130 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 SLC27A1Q6PCB7 646 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 CALHM3Q86XJ0 350 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 MRPS31Q92665 395 aaKnown RBP13.94□□□□□ -0.18
PTPRA-201ENST00000216877 KIAA1143Q96AT1 154 aaPredicted RBP13.94□□□□□ -0.18
PTPRA-201ENST00000216877 HIST1H2AHQ96KK5 128 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 HIST1H2AJQ99878 128 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 TEX10Q9NXF1 929 aaPredicted RBP13.94□□□□□ -0.18
PTPRA-201ENST00000216877 CFAP97Q9P2B7 532 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 IRAK3Q9Y616 596 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 CHD5Q8TDI0 1954 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 C2orf78A6NCI8 922 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 MPZL2O60487 215 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 EPB42P16452 691 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 HOXB6P17509 224 aaKnown RBP13.94□□□□□ -0.18
PTPRA-201ENST00000216877 SNRPEP62304 92 aaKnown RBP13.94□□□□□ -0.18
PTPRA-201ENST00000216877 MLLT11Q13015 90 aaPredicted RBP13.94□□□□□ -0.18
PTPRA-201ENST00000216877 SERTAD2Q14140 314 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 GPR33Q49SQ1 333 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 TMEM107Q6UX40 140 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 RBMS3Q6XE24 437 aaKnown RBP13.94□□□□□ -0.18
PTPRA-201ENST00000216877 CDH26Q8IXH8 852 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 NAGSQ8N159 534 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 C11orf65Q8NCR3 313 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 TMEM163Q8TC26 289 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 FBXO17Q96EF6 278 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 HMCESQ96FZ2 354 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 GSN-AS1Q9NRJ2 163 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 FLRT1Q9NZU1 646 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 MAP4K5Q9Y4K4 846 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 MIA3Q5JRA6 1907 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 STAU1O95793 577 aaKnown RBP13.94□□□□□ -0.18
PTPRA-201ENST00000216877 HOXB1P14653 301 aaPredicted RBP13.94□□□□□ -0.18
PTPRA-201ENST00000216877 HOXB8P17481 243 aaPredicted RBP13.94□□□□□ -0.18
PTPRA-201ENST00000216877 SOX18P35713 384 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 ADCYAP1R1P41586 468 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 XKP51811 444 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 SV2CQ496J9 727 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 C9orf57Q5W0N0 161 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 TMEM91Q6ZNR0 172 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 SZRD1Q7Z422 152 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 SFT2D1Q8WV19 159 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 ZC3HAV1LQ96H79 300 aaKnown RBP13.94□□□□□ -0.18
PTPRA-201ENST00000216877 PFDN5Q99471 154 aa13.94□□□□□ -0.18
PTPRA-201ENST00000216877 POLR2J3Q9H1A7 115 aaKnown RBP13.94□□□□□ -0.18
PTPRA-201ENST00000216877 NMNAT1Q9HAN9 279 aaPredicted RBP13.94□□□□□ -0.18
PTPRA-201ENST00000216877 COL2A1P02458 1487 aaPredicted RBP13.94□□□□□ -0.18
PTPRA-201ENST00000216877 SH3D21A4FU49 640 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 D6RAR5 112 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 GPR31O00270 319 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 HRO43593 1189 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 PCDH7O60245 1069 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 BPIP17213 487 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 ALDH9A1P49189 494 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 TAF6P49848 677 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 GINS1Q14691 196 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 HES5Q5TA89 166 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 PRAMEF13Q5VWM6 474 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 SIAH3Q8IW03 269 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 INTS12Q96CB8 462 aaKnown RBP13.93□□□□□ -0.18
PTPRA-201ENST00000216877 LRR1Q96L50 414 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 TSGA13Q96PP4 275 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 MAPKAP1Q9BPZ7 522 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 REG4Q9BYZ8 158 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 RSPH9Q9H1X1 276 aaPredicted RBP13.93□□□□□ -0.18
PTPRA-201ENST00000216877 MANBAO00462 879 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 NFYAP23511 347 aaPredicted RBP13.93□□□□□ -0.18
PTPRA-201ENST00000216877 HLA-FP30511 346 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 ACSL1P33121 698 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 KCNJ10P78508 379 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 RGS7BPQ6MZT1 257 aaPredicted RBP13.93□□□□□ -0.18
PTPRA-201ENST00000216877 PROKR2Q8NFJ6 384 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 OR5AK3PQ8NH89 298 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 C10orf90Q96M02 699 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 PPT2Q9UMR5 302 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 A0A1B0GW55 424 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 SYNDIG1LA6NDD5 238 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 AIPO00170 330 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 EIF3GO75821 320 aaKnown RBP eCLIP13.93□□□□□ -0.18
PTPRA-201ENST00000216877 CXCL14O95715 111 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 DUX4L2P0CJ85 424 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 DUX4L3P0CJ86 424 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 DUX4L4P0CJ87 422 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 DUX4L5P0CJ88 424 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 DUX4L6P0CJ89 424 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 DUX4L7P0CJ90 424 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 CBSLP0DN79 551 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 ETFAP13804 333 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 MC4RP32245 332 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 CBSP35520 551 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 MMP12P39900 470 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 DUOXA1Q1HG43 343 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 KRT78Q8N1N4 520 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 TMEM185AQ8NFB2 350 aa13.93□□□□□ -0.18
PTPRA-201ENST00000216877 GPR156Q8NFN8 814 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms