RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 TAF7Q15545 349 aaPredicted RBP15.33■□□□□ 0.04
CLN3-257ENST00000637110 C2CD5Q86YS7 1000 aa15.33■□□□□ 0.04
CLN3-257ENST00000637110 PLEKHF1Q96S99 279 aa15.33■□□□□ 0.04
CLN3-257ENST00000637110 IQCA1LA6NCM1 817 aa15.32■□□□□ 0.04
CLN3-257ENST00000637110 TMEM88BA6NKF7 163 aa15.32■□□□□ 0.04
CLN3-257ENST00000637110 VEGFBP49765 207 aa15.32■□□□□ 0.04
CLN3-257ENST00000637110 MIS18AQ9NYP9 233 aa15.32■□□□□ 0.04
CLN3-257ENST00000637110 COL15A1P39059 1388 aa15.32■□□□□ 0.04
CLN3-257ENST00000637110 UBR2Q8IWV8 1755 aa15.31■□□□□ 0.04
CLN3-257ENST00000637110 A0A087WZG4 1122 aa15.31■□□□□ 0.04
CLN3-257ENST00000637110 NFIXQ14938 502 aa15.31■□□□□ 0.04
CLN3-257ENST00000637110 LDHDQ86WU2 507 aa15.31■□□□□ 0.04
CLN3-257ENST00000637110 PRKRIP1Q9H875 184 aaPredicted RBP15.31■□□□□ 0.04
CLN3-257ENST00000637110 NARFQ9UHQ1 456 aa15.31■□□□□ 0.04
CLN3-257ENST00000637110 PDZRN3Q9UPQ7 1066 aa15.31■□□□□ 0.04
CLN3-257ENST00000637110 PASKQ96RG2 1323 aa15.31■□□□□ 0.04
CLN3-257ENST00000637110 SIPA1L3O60292 1781 aaPredicted RBP15.31■□□□□ 0.04
CLN3-257ENST00000637110 SCN4AP35499 1836 aa15.31■□□□□ 0.04
CLN3-257ENST00000637110 FER1L6Q2WGJ9 1857 aa15.31■□□□□ 0.04
CLN3-257ENST00000637110 A1BGP04217 495 aa15.3■□□□□ 0.04
CLN3-257ENST00000637110 SERPINB2P05120 415 aa15.3■□□□□ 0.04
CLN3-257ENST00000637110 SNRPA1P09661 255 aaKnown RBP15.3■□□□□ 0.04
CLN3-257ENST00000637110 RIPK4P57078 832 aa15.3■□□□□ 0.04
CLN3-257ENST00000637110 MAP2K1Q02750 393 aaPredicted RBP15.3■□□□□ 0.04
CLN3-257ENST00000637110 CCDC146Q8IYE0 955 aa15.3■□□□□ 0.04
CLN3-257ENST00000637110 PNISRQ8TF01 805 aaKnown RBP15.3■□□□□ 0.04
CLN3-257ENST00000637110 THUMPD2Q9BTF0 503 aaKnown RBP15.3■□□□□ 0.04
CLN3-257ENST00000637110 POTEIP0CG38 1075 aa15.29■□□□□ 0.04
CLN3-257ENST00000637110 POTEJP0CG39 1038 aa15.29■□□□□ 0.04
CLN3-257ENST00000637110 HSPA8P11142 646 aaKnown RBP15.29■□□□□ 0.04
CLN3-257ENST00000637110 NEUROD2Q15784 382 aa15.29■□□□□ 0.04
CLN3-257ENST00000637110 LTBP3Q9NS15 1303 aa15.28■□□□□ 0.04
CLN3-257ENST00000637110 PRAMEF22A3QJZ6 481 aa15.28■□□□□ 0.04
CLN3-257ENST00000637110 ZNF316A6NFI3 1004 aaPredicted RBP15.28■□□□□ 0.04
CLN3-257ENST00000637110 CCDC85CA6NKD9 419 aa15.28■□□□□ 0.04
CLN3-257ENST00000637110 DDNO94850 711 aaPredicted RBP15.28■□□□□ 0.04
CLN3-257ENST00000637110 EIF5P55010 431 aaKnown RBP15.28■□□□□ 0.04
CLN3-257ENST00000637110 BICDL1Q6ZP65 573 aa15.28■□□□□ 0.04
CLN3-257ENST00000637110 ZNF622Q969S3 477 aaKnown RBP eCLIP15.28■□□□□ 0.04
CLN3-257ENST00000637110 TAOK3Q9H2K8 898 aa15.28■□□□□ 0.04
CLN3-257ENST00000637110 TBC1D2BQ9UPU7 963 aa15.28■□□□□ 0.04
CLN3-257ENST00000637110 RRP7AQ9Y3A4 280 aaKnown RBP15.28■□□□□ 0.04
CLN3-257ENST00000637110 USP16Q9Y5T5 823 aa15.28■□□□□ 0.04
CLN3-257ENST00000637110 DLG5Q8TDM6 1919 aa15.27■□□□□ 0.04
CLN3-257ENST00000637110 C21orf2O43822 256 aa15.27■□□□□ 0.04
CLN3-257ENST00000637110 IL6STP40189 918 aaPredicted RBP15.27■□□□□ 0.04
CLN3-257ENST00000637110 PIP4K2AP48426 406 aaPredicted RBP15.27■□□□□ 0.04
CLN3-257ENST00000637110 RGS19P49795 217 aa15.27■□□□□ 0.04
CLN3-257ENST00000637110 LMOD3Q0VAK6 560 aa15.27■□□□□ 0.04
CLN3-257ENST00000637110 PDE6BP35913 854 aa15.26■□□□□ 0.03
CLN3-257ENST00000637110 TMPOP42166 694 aaKnown RBP15.26■□□□□ 0.03
CLN3-257ENST00000637110 DEFB115Q30KQ5 88 aa15.26■□□□□ 0.03
CLN3-257ENST00000637110 ADAMTS8Q9UP79 889 aa15.26■□□□□ 0.03
CLN3-257ENST00000637110 RASSF10A6NK89 507 aa15.25■□□□□ 0.03
CLN3-257ENST00000637110 NPHP1O15259 732 aa15.25■□□□□ 0.03
CLN3-257ENST00000637110 SOGA3Q5TF21 947 aa15.25■□□□□ 0.03
CLN3-257ENST00000637110 RUNDC1Q96C34 613 aa15.25■□□□□ 0.03
CLN3-257ENST00000637110 L3MBTL3Q96JM7 780 aaPredicted RBP15.25■□□□□ 0.03
CLN3-257ENST00000637110 BEGAINQ9BUH8 593 aa15.25■□□□□ 0.03
CLN3-257ENST00000637110 TAF1DQ9H5J8 278 aaPredicted RBP15.25■□□□□ 0.03
CLN3-257ENST00000637110 ZNF219Q9P2Y4 722 aaPredicted RBP15.25■□□□□ 0.03
CLN3-257ENST00000637110 CARMIL3Q8ND23 1372 aa15.24■□□□□ 0.03
CLN3-257ENST00000637110 DZIP3Q86Y13 1208 aaKnown RBP15.24■□□□□ 0.03
CLN3-257ENST00000637110 BRIP1Q9BX63 1249 aa15.24■□□□□ 0.03
CLN3-257ENST00000637110 BCL2L12Q9HB09 334 aa15.24■□□□□ 0.03
CLN3-257ENST00000637110 TSPYL4Q9UJ04 414 aa15.24■□□□□ 0.03
CLN3-257ENST00000637110 WDR33Q9C0J8 1336 aaKnown RBP15.23■□□□□ 0.03
CLN3-257ENST00000637110 ANKRD31Q8N7Z5 1873 aa15.23■□□□□ 0.03
CLN3-257ENST00000637110 ITGBL1O95965 494 aaPredicted RBP15.23■□□□□ 0.03
CLN3-257ENST00000637110 EAPPQ56P03 285 aaPredicted RBP15.23■□□□□ 0.03
CLN3-257ENST00000637110 NGEFQ8N5V2 710 aa15.23■□□□□ 0.03
CLN3-257ENST00000637110 CLEC11AQ9Y240 323 aa15.23■□□□□ 0.03
CLN3-257ENST00000637110 LAS1LQ9Y4W2 734 aaKnown RBP15.23■□□□□ 0.03
CLN3-257ENST00000637110 TBC1D9BQ66K14 1250 aa15.22■□□□□ 0.03
CLN3-257ENST00000637110 CNKSR1Q969H4 720 aa15.22■□□□□ 0.03
CLN3-257ENST00000637110 ABT1Q9ULW3 272 aaKnown RBP15.22■□□□□ 0.03
CLN3-257ENST00000637110 COL11A2P13942 1736 aaPredicted RBP15.22■□□□□ 0.03
CLN3-257ENST00000637110 CACNA1SQ13698 1873 aa15.21■□□□□ 0.03
CLN3-257ENST00000637110 ANP32CO43423 234 aa15.21■□□□□ 0.03
CLN3-257ENST00000637110 EIF4A1P60842 406 aaKnown RBP15.21■□□□□ 0.03
CLN3-257ENST00000637110 PNMA8AQ86V59 439 aaPredicted RBP15.21■□□□□ 0.03
CLN3-257ENST00000637110 HACL1Q9UJ83 578 aa15.21■□□□□ 0.03
CLN3-257ENST00000637110 SETDB2Q96T68 719 aa15.2■□□□□ 0.02
CLN3-257ENST00000637110 ZNF652Q9Y2D9 606 aa15.2■□□□□ 0.02
CLN3-257ENST00000637110 ARFGEF2Q9Y6D5 1785 aa15.2■□□□□ 0.02
CLN3-257ENST00000637110 NBPF26B4DH59 902 aa15.19■□□□□ 0.02
CLN3-257ENST00000637110 CAMTA2O94983 1202 aa15.19■□□□□ 0.02
CLN3-257ENST00000637110 MYL6BP14649 208 aa15.19■□□□□ 0.02
CLN3-257ENST00000637110 ECE1P42892 770 aa15.19■□□□□ 0.02
CLN3-257ENST00000637110 NBPF10Q6P3W6 841 aaKnown RBP15.19■□□□□ 0.02
CLN3-257ENST00000637110 CNTROBQ8N137 903 aa15.19■□□□□ 0.02
CLN3-257ENST00000637110 NBPF15Q8N660 670 aa15.19■□□□□ 0.02
CLN3-257ENST00000637110 CFAP44Q96MT7 982 aa15.19■□□□□ 0.02
CLN3-257ENST00000637110 SLX4Q8IY92 1834 aa15.19■□□□□ 0.02
CLN3-257ENST00000637110 ADAMTSL1Q8N6G6 1762 aa15.19■□□□□ 0.02
CLN3-257ENST00000637110 THSD7BQ9C0I4 1608 aa15.18■□□□□ 0.02
CLN3-257ENST00000637110 EIF2S2P20042 333 aaKnown RBP15.18■□□□□ 0.02
CLN3-257ENST00000637110 EPHX2P34913 555 aa15.18■□□□□ 0.02
CLN3-257ENST00000637110 STYK1Q6J9G0 422 aa15.18■□□□□ 0.02
CLN3-257ENST00000637110 PRPF40BQ6NWY9 871 aaKnown RBP15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms