RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 PTCD1O75127 700 aaKnown RBP19.18■□□□□ 0.66
CLN3-251ENST00000636853 REC8O95072 547 aa19.17■□□□□ 0.66
CLN3-251ENST00000636853 JARID2Q92833 1246 aaPredicted RBP19.17■□□□□ 0.66
CLN3-251ENST00000636853 AOX1Q06278 1338 aa19.17■□□□□ 0.66
CLN3-251ENST00000636853 ROBO1Q9Y6N7 1651 aa19.17■□□□□ 0.66
CLN3-251ENST00000636853 NBPF26B4DH59 902 aa19.17■□□□□ 0.66
CLN3-251ENST00000636853 MAP4K4O95819 1239 aaPredicted RBP19.17■□□□□ 0.66
CLN3-251ENST00000636853 NBPF14Q5TI25 921 aa19.17■□□□□ 0.66
CLN3-251ENST00000636853 NBPF10Q6P3W6 841 aaKnown RBP19.17■□□□□ 0.66
CLN3-251ENST00000636853 NBPF15Q8N660 670 aa19.17■□□□□ 0.66
CLN3-251ENST00000636853 PI4K2BQ8TCG2 481 aa19.16■□□□□ 0.66
CLN3-251ENST00000636853 UBR2Q8IWV8 1755 aa19.16■□□□□ 0.66
CLN3-251ENST00000636853 CHMLP26374 656 aa19.16■□□□□ 0.66
CLN3-251ENST00000636853 ATP5J2-PTCD1G3V325 749 aa19.15■□□□□ 0.66
CLN3-251ENST00000636853 KCPQ6ZWJ8 1503 aa19.15■□□□□ 0.66
CLN3-251ENST00000636853 ESYT1Q9BSJ8 1104 aa19.15■□□□□ 0.66
CLN3-251ENST00000636853 ARFGEF2Q9Y6D5 1785 aa19.15■□□□□ 0.66
CLN3-251ENST00000636853 A1BGP04217 495 aa19.14■□□□□ 0.66
CLN3-251ENST00000636853 EPHA10Q5JZY3 1008 aa19.14■□□□□ 0.66
CLN3-251ENST00000636853 AFDNP55196 1824 aaKnown RBP19.14■□□□□ 0.65
CLN3-251ENST00000636853 TOGARAM1Q9Y4F4 1720 aa19.14■□□□□ 0.65
CLN3-251ENST00000636853 CLASRPQ8N2M8 674 aaKnown RBP19.13■□□□□ 0.65
CLN3-251ENST00000636853 PLBD2Q8NHP8 589 aa19.13■□□□□ 0.65
CLN3-251ENST00000636853 PAPPAQ13219 1627 aa19.13■□□□□ 0.65
CLN3-251ENST00000636853 RABEP1Q15276 862 aa19.13■□□□□ 0.65
CLN3-251ENST00000636853 K7ELQ4 463 aaPredicted RBP19.12■□□□□ 0.65
CLN3-251ENST00000636853 TTLL7Q6ZT98 887 aa19.12■□□□□ 0.65
CLN3-251ENST00000636853 KLHDC4Q8TBB5 520 aa19.12■□□□□ 0.65
CLN3-251ENST00000636853 TMOD3Q9NYL9 352 aa19.12■□□□□ 0.65
CLN3-251ENST00000636853 CHMP5Q9NZZ3 219 aa19.12■□□□□ 0.65
CLN3-251ENST00000636853 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.12■□□□□ 0.65
CLN3-251ENST00000636853 AK9Q5TCS8 1911 aa19.12■□□□□ 0.65
CLN3-251ENST00000636853 ERC1Q8IUD2 1116 aa19.12■□□□□ 0.65
CLN3-251ENST00000636853 SIL1Q9H173 461 aa19.12■□□□□ 0.65
CLN3-251ENST00000636853 ERBB4Q15303 1308 aa19.11■□□□□ 0.65
CLN3-251ENST00000636853 SASH1O94885 1247 aa19.11■□□□□ 0.65
CLN3-251ENST00000636853 UBE3BQ7Z3V4 1068 aa19.11■□□□□ 0.65
CLN3-251ENST00000636853 FOXD4L1Q9NU39 408 aa19.11■□□□□ 0.65
CLN3-251ENST00000636853 PRKCSHP14314 528 aaPredicted RBP19.11■□□□□ 0.65
CLN3-251ENST00000636853 G3BP1Q13283 466 aaKnown RBP eCLIP19.11■□□□□ 0.65
CLN3-251ENST00000636853 TNS2Q63HR2 1409 aa19.11■□□□□ 0.65
CLN3-251ENST00000636853 COL14A1Q05707 1796 aaKnown RBP19.1■□□□□ 0.65
CLN3-251ENST00000636853 A0A087WZG4 1122 aa19.1■□□□□ 0.65
CLN3-251ENST00000636853 USP42Q9H9J4 1324 aaKnown RBP19.1■□□□□ 0.65
CLN3-251ENST00000636853 IFIT2P09913 472 aaKnown RBP19.09■□□□□ 0.65
CLN3-251ENST00000636853 AACSQ86V21 672 aa19.09■□□□□ 0.65
CLN3-251ENST00000636853 IL25Q9H293 177 aa19.09■□□□□ 0.65
CLN3-251ENST00000636853 ANO2Q9NQ90 1003 aa19.09■□□□□ 0.65
CLN3-251ENST00000636853 HSP90AA1P07900 732 aaKnown RBP19.09■□□□□ 0.65
CLN3-251ENST00000636853 DDIT3P35638 169 aa19.09■□□□□ 0.65
CLN3-251ENST00000636853 ASAP1Q9ULH1 1129 aa19.09■□□□□ 0.65
CLN3-251ENST00000636853 TTC41PQ6P2S7 1318 aa19.09■□□□□ 0.65
CLN3-251ENST00000636853 COL16A1Q07092 1604 aaPredicted RBP19.08■□□□□ 0.65
CLN3-251ENST00000636853 AHDC1Q5TGY3 1603 aaPredicted RBP19.08■□□□□ 0.65
CLN3-251ENST00000636853 PIGBQ92521 554 aa19.08■□□□□ 0.65
CLN3-251ENST00000636853 GLRX3O76003 335 aaKnown RBP19.08■□□□□ 0.64
CLN3-251ENST00000636853 CNTROBQ8N137 903 aa19.08■□□□□ 0.64
CLN3-251ENST00000636853 ZBTB3Q9H5J0 574 aa19.07■□□□□ 0.64
CLN3-251ENST00000636853 ECHDC1Q9NTX5 307 aa19.07■□□□□ 0.64
CLN3-251ENST00000636853 KAT6BQ8WYB5 2073 aa19.07■□□□□ 0.64
CLN3-251ENST00000636853 EAF2Q96CJ1 260 aaPredicted RBP19.07■□□□□ 0.64
CLN3-251ENST00000636853 DISP2A7MBM2 1401 aa19.07■□□□□ 0.64
CLN3-251ENST00000636853 CASP7P55210 303 aa19.06■□□□□ 0.64
CLN3-251ENST00000636853 CCDC8Q9H0W5 538 aaPredicted RBP19.06■□□□□ 0.64
CLN3-251ENST00000636853 COL22A1Q8NFW1 1626 aaPredicted RBP19.06■□□□□ 0.64
CLN3-251ENST00000636853 IL27Q8NEV9 243 aa19.05■□□□□ 0.64
CLN3-251ENST00000636853 NUP188Q5SRE5 1749 aa19.05■□□□□ 0.64
CLN3-251ENST00000636853 ADAMTS2O95450 1211 aa19.05■□□□□ 0.64
CLN3-251ENST00000636853 GPATCH3Q96I76 525 aa19.05■□□□□ 0.64
CLN3-251ENST00000636853 ATG3Q9NT62 314 aa19.05■□□□□ 0.64
CLN3-251ENST00000636853 PALD1Q9ULE6 856 aa19.05■□□□□ 0.64
CLN3-251ENST00000636853 ZNF330Q9Y3S2 320 aaPredicted RBP19.05■□□□□ 0.64
CLN3-251ENST00000636853 LTBP4Q8N2S1 1624 aa19.05■□□□□ 0.64
CLN3-251ENST00000636853 ITGB4P16144 1822 aa19.05■□□□□ 0.64
CLN3-251ENST00000636853 RFX5P48382 616 aaPredicted RBP19.04■□□□□ 0.64
CLN3-251ENST00000636853 RABL6Q3YEC7 729 aaPredicted RBP19.04■□□□□ 0.64
CLN3-251ENST00000636853 DNAJC10Q8IXB1 793 aa19.04■□□□□ 0.64
CLN3-251ENST00000636853 TLR7Q9NYK1 1049 aaKnown RBP19.04■□□□□ 0.64
CLN3-251ENST00000636853 ST18O60284 1047 aa19.03■□□□□ 0.64
CLN3-251ENST00000636853 PTPN12Q05209 780 aaKnown RBP19.03■□□□□ 0.64
CLN3-251ENST00000636853 COPRSQ9NQ92 184 aa19.03■□□□□ 0.64
CLN3-251ENST00000636853 CWC25Q9NXE8 425 aaPredicted RBP19.03■□□□□ 0.64
CLN3-251ENST00000636853 MCCP23508 829 aa19.03■□□□□ 0.64
CLN3-251ENST00000636853 COL15A1P39059 1388 aa19.03■□□□□ 0.64
CLN3-251ENST00000636853 H7C1W4 665 aa19.02■□□□□ 0.64
CLN3-251ENST00000636853 EXOC5O00471 708 aa19.02■□□□□ 0.64
CLN3-251ENST00000636853 LMBR1LQ6UX01 489 aa19.02■□□□□ 0.64
CLN3-251ENST00000636853 CWC27Q6UX04 472 aaKnown RBP19.02■□□□□ 0.64
CLN3-251ENST00000636853 ANO8Q9HCE9 1232 aaPredicted RBP19.02■□□□□ 0.64
CLN3-251ENST00000636853 SGSM2O43147 1006 aa19.02■□□□□ 0.63
CLN3-251ENST00000636853 GSE1Q14687 1217 aa19.02■□□□□ 0.63
CLN3-251ENST00000636853 FOXO4P98177 505 aa19.01■□□□□ 0.63
CLN3-251ENST00000636853 CIZ1Q9ULV3 898 aaPredicted RBP19.01■□□□□ 0.63
CLN3-251ENST00000636853 CHMP3Q9Y3E7 222 aa19.01■□□□□ 0.63
CLN3-251ENST00000636853 MCM4P33991 863 aa19■□□□□ 0.63
CLN3-251ENST00000636853 NEK4P51957 841 aa19■□□□□ 0.63
CLN3-251ENST00000636853 SYTL4Q96C24 671 aaPredicted RBP19■□□□□ 0.63
CLN3-251ENST00000636853 PHLPP1O60346 1717 aa19■□□□□ 0.63
CLN3-251ENST00000636853 TJP1Q07157 1748 aa19■□□□□ 0.63
CLN3-251ENST00000636853 TFCP2Q12800 502 aa18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms