RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 ZC3H4Q9UPT8 1303 aaKnown RBP23.3■■□□□ 1.32
CLN3-247ENST00000636351 TAF7Q15545 349 aaPredicted RBP23.29■■□□□ 1.32
CLN3-247ENST00000636351 IL6STP40189 918 aaPredicted RBP23.28■■□□□ 1.32
CLN3-247ENST00000636351 HTRA3P83110 453 aa23.28■■□□□ 1.32
CLN3-247ENST00000636351 A1BGP04217 495 aa23.27■■□□□ 1.32
CLN3-247ENST00000636351 CCDC24Q8N4L8 307 aa23.27■■□□□ 1.32
CLN3-247ENST00000636351 TRIM35Q9UPQ4 493 aa23.27■■□□□ 1.32
CLN3-247ENST00000636351 NFKBIEO00221 500 aa23.26■■□□□ 1.31
CLN3-247ENST00000636351 KCNQ3O43525 872 aa23.26■■□□□ 1.31
CLN3-247ENST00000636351 PRR5LQ6MZQ0 368 aa23.26■■□□□ 1.31
CLN3-247ENST00000636351 NPM2Q86SE8 214 aaKnown RBP23.25■■□□□ 1.31
CLN3-247ENST00000636351 ZNF622Q969S3 477 aaKnown RBP eCLIP23.25■■□□□ 1.31
CLN3-247ENST00000636351 MIS18AQ9NYP9 233 aa23.25■■□□□ 1.31
CLN3-247ENST00000636351 ANKRD31Q8N7Z5 1873 aa23.24■■□□□ 1.31
CLN3-247ENST00000636351 PDE6BP35913 854 aa23.24■■□□□ 1.31
CLN3-247ENST00000636351 BRIP1Q9BX63 1249 aa23.24■■□□□ 1.31
CLN3-247ENST00000636351 ZNF219Q9P2Y4 722 aaPredicted RBP23.24■■□□□ 1.31
CLN3-247ENST00000636351 TSPYL4Q9UJ04 414 aa23.24■■□□□ 1.31
CLN3-247ENST00000636351 TIAM2Q8IVF5 1701 aa23.23■■□□□ 1.31
CLN3-247ENST00000636351 GLTPD2A6NH11 291 aa23.23■■□□□ 1.31
CLN3-247ENST00000636351 CAMTA2O94983 1202 aa23.23■■□□□ 1.31
CLN3-247ENST00000636351 SMC1BQ8NDV3 1235 aa23.23■■□□□ 1.31
CLN3-247ENST00000636351 LAS1LQ9Y4W2 734 aaKnown RBP23.23■■□□□ 1.31
CLN3-247ENST00000636351 COL11A2P13942 1736 aaPredicted RBP23.22■■□□□ 1.31
CLN3-247ENST00000636351 KLRG1Q96E93 195 aa23.22■■□□□ 1.31
CLN3-247ENST00000636351 PDZRN3Q9UPQ7 1066 aa23.22■■□□□ 1.31
CLN3-247ENST00000636351 SALL2Q9Y467 1007 aaPredicted RBP23.22■■□□□ 1.31
CLN3-247ENST00000636351 NPHP1O15259 732 aa23.21■■□□□ 1.31
CLN3-247ENST00000636351 C21orf2O43822 256 aa23.21■■□□□ 1.31
CLN3-247ENST00000636351 PIP4K2AP48426 406 aaPredicted RBP23.21■■□□□ 1.31
CLN3-247ENST00000636351 CNBD1Q8NA66 436 aa23.21■■□□□ 1.31
CLN3-247ENST00000636351 SETDB2Q96T68 719 aa23.21■■□□□ 1.31
CLN3-247ENST00000636351 USP16Q9Y5T5 823 aa23.21■■□□□ 1.31
CLN3-247ENST00000636351 VEGFAP15692 232 aaPredicted RBP23.2■■□□□ 1.3
CLN3-247ENST00000636351 CALD1Q05682 793 aaKnown RBP23.2■■□□□ 1.3
CLN3-247ENST00000636351 DZIP3Q86Y13 1208 aaKnown RBP23.2■■□□□ 1.3
CLN3-247ENST00000636351 KDM3BQ7LBC6 1761 aa23.19■■□□□ 1.3
CLN3-247ENST00000636351 PRAMEF22A3QJZ6 481 aa23.19■■□□□ 1.3
CLN3-247ENST00000636351 ST5P78524 1137 aa23.18■■□□□ 1.3
CLN3-247ENST00000636351 BCORQ6W2J9 1755 aa23.18■■□□□ 1.3
CLN3-247ENST00000636351 JMYQ8N9B5 988 aa23.16■■□□□ 1.3
CLN3-247ENST00000636351 BABAM1Q9NWV8 329 aa23.16■■□□□ 1.3
CLN3-247ENST00000636351 SNRPA1P09661 255 aaKnown RBP23.15■■□□□ 1.3
CLN3-247ENST00000636351 CCDC27Q2M243 656 aa23.15■■□□□ 1.3
CLN3-247ENST00000636351 ERFEQ4G0M1 354 aa23.15■■□□□ 1.3
CLN3-247ENST00000636351 DPY19L2Q6NUT2 758 aa23.15■■□□□ 1.3
CLN3-247ENST00000636351 CNKSR1Q969H4 720 aa23.15■■□□□ 1.3
CLN3-247ENST00000636351 CCDC88AQ3V6T2 1871 aa23.15■■□□□ 1.3
CLN3-247ENST00000636351 POTECB2RU33 542 aa23.14■■□□□ 1.29
CLN3-247ENST00000636351 SRGNP10124 158 aa23.14■■□□□ 1.29
CLN3-247ENST00000636351 EIF4A1P60842 406 aaKnown RBP23.14■■□□□ 1.29
CLN3-247ENST00000636351 STYK1Q6J9G0 422 aa23.14■■□□□ 1.29
CLN3-247ENST00000636351 PRPF40BQ6NWY9 871 aaKnown RBP23.14■■□□□ 1.29
CLN3-247ENST00000636351 WWC1Q8IX03 1113 aa23.14■■□□□ 1.29
CLN3-247ENST00000636351 TAOK3Q9H2K8 898 aa23.14■■□□□ 1.29
CLN3-247ENST00000636351 NBPF5PQ86XG9 351 aaPredicted RBP23.13■■□□□ 1.29
CLN3-247ENST00000636351 CFAP44Q96MT7 982 aa23.13■■□□□ 1.29
CLN3-247ENST00000636351 IFT57Q9NWB7 429 aa23.13■■□□□ 1.29
CLN3-247ENST00000636351 FER1L6Q2WGJ9 1857 aa23.13■■□□□ 1.29
CLN3-247ENST00000636351 LTBP3Q9NS15 1303 aa23.12■■□□□ 1.29
CLN3-247ENST00000636351 CHL1O00533 1208 aa23.12■■□□□ 1.29
CLN3-247ENST00000636351 GNAI1P63096 354 aa23.12■■□□□ 1.29
CLN3-247ENST00000636351 CLEC4GQ6UXB4 293 aa23.12■■□□□ 1.29
CLN3-247ENST00000636351 MASTLQ96GX5 879 aa23.12■■□□□ 1.29
CLN3-247ENST00000636351 ZNF652Q9Y2D9 606 aa23.12■■□□□ 1.29
CLN3-247ENST00000636351 NCBP3Q53F19 620 aaKnown RBP23.11■■□□□ 1.29
CLN3-247ENST00000636351 NGEFQ8N5V2 710 aa23.11■■□□□ 1.29
CLN3-247ENST00000636351 NBPF26B4DH59 902 aa23.1■■□□□ 1.29
CLN3-247ENST00000636351 NBPF10Q6P3W6 841 aaKnown RBP23.1■■□□□ 1.29
CLN3-247ENST00000636351 NBPF15Q8N660 670 aa23.1■■□□□ 1.29
CLN3-247ENST00000636351 MBIPQ9NS73 344 aa23.1■■□□□ 1.29
CLN3-247ENST00000636351 SLX4Q8IY92 1834 aa23.1■■□□□ 1.29
CLN3-247ENST00000636351 SOGA3Q5TF21 947 aa23.09■■□□□ 1.29
CLN3-247ENST00000636351 LAMB4A4D0S4 1761 aa23.09■■□□□ 1.29
CLN3-247ENST00000636351 CACNA1SQ13698 1873 aa23.09■■□□□ 1.29
CLN3-247ENST00000636351 NIP7Q9Y221 180 aaKnown RBP eCLIP23.08■■□□□ 1.29
CLN3-247ENST00000636351 ARFGEF2Q9Y6D5 1785 aa23.07■■□□□ 1.28
CLN3-247ENST00000636351 DICER1Q9UPY3 1922 aaKnown RBP23.06■■□□□ 1.28
CLN3-247ENST00000636351 FAM177BA6PVY3 158 aa23.06■■□□□ 1.28
CLN3-247ENST00000636351 DDNO94850 711 aaPredicted RBP23.06■■□□□ 1.28
CLN3-247ENST00000636351 ZNF853P0CG23 659 aa23.06■■□□□ 1.28
CLN3-247ENST00000636351 NPR1P16066 1061 aa23.06■■□□□ 1.28
CLN3-247ENST00000636351 IL16Q14005 1332 aa23.06■■□□□ 1.28
CLN3-247ENST00000636351 KRT24Q2M2I5 525 aa23.05■■□□□ 1.28
CLN3-247ENST00000636351 COL13A1Q5TAT6 717 aaPredicted RBP23.05■■□□□ 1.28
CLN3-247ENST00000636351 TPTE2Q6XPS3 522 aa23.05■■□□□ 1.28
CLN3-247ENST00000636351 WDR63Q8IWG1 891 aa23.05■■□□□ 1.28
CLN3-247ENST00000636351 TSR2Q969E8 191 aaKnown RBP23.05■■□□□ 1.28
CLN3-247ENST00000636351 KLRG2A4D1S0 409 aaPredicted RBP23.04■■□□□ 1.28
CLN3-247ENST00000636351 RGL2O15211 777 aa23.04■■□□□ 1.28
CLN3-247ENST00000636351 HLFQ16534 295 aa23.04■■□□□ 1.28
CLN3-247ENST00000636351 CCDC93Q567U6 631 aa23.04■■□□□ 1.28
CLN3-247ENST00000636351 C7orf43Q8WVR3 580 aa23.04■■□□□ 1.28
CLN3-247ENST00000636351 EIF2S2P20042 333 aaKnown RBP23.03■■□□□ 1.28
CLN3-247ENST00000636351 POTEIP0CG38 1075 aa23.02■■□□□ 1.28
CLN3-247ENST00000636351 POTEJP0CG39 1038 aa23.02■■□□□ 1.28
CLN3-247ENST00000636351 CHADLQ6NUI6 762 aa23.01■■□□□ 1.27
CLN3-247ENST00000636351 OLFM4Q6UX06 510 aa23.01■■□□□ 1.27
CLN3-247ENST00000636351 NECTIN2Q92692 538 aa23.01■■□□□ 1.27
CLN3-247ENST00000636351 GTF2E1P29083 439 aaPredicted RBP23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms