RNA–Protein interactions for RNA: ENST00000636238.1

CIITA-214, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-214ENST00000636238 FKBP4Q02790 459 aaKnown RBP eCLIP9.91□□□□□ -0.82
CIITA-214ENST00000636238 SLC39A6Q13433 755 aa9.91□□□□□ -0.82
CIITA-214ENST00000636238 CNGB1Q14028 1251 aaPredicted RBP9.91□□□□□ -0.82
CIITA-214ENST00000636238 TBC1D9BQ66K14 1250 aa9.91□□□□□ -0.82
CIITA-214ENST00000636238 C7orf43Q8WVR3 580 aa9.91□□□□□ -0.82
CIITA-214ENST00000636238 ABHD8Q96I13 439 aa9.91□□□□□ -0.82
CIITA-214ENST00000636238 NPHP1O15259 732 aa9.9□□□□□ -0.82
CIITA-214ENST00000636238 ANP32CO43423 234 aa9.9□□□□□ -0.82
CIITA-214ENST00000636238 HSPA8P11142 646 aaKnown RBP9.9□□□□□ -0.82
CIITA-214ENST00000636238 NPR1P16066 1061 aa9.9□□□□□ -0.82
CIITA-214ENST00000636238 ECE1P42892 770 aa9.9□□□□□ -0.82
CIITA-214ENST00000636238 DEFB115Q30KQ5 88 aa9.9□□□□□ -0.82
CIITA-214ENST00000636238 CC2D2BQ6DHV5 1058 aa9.9□□□□□ -0.82
CIITA-214ENST00000636238 ZNF790Q6PG37 636 aa9.9□□□□□ -0.82
CIITA-214ENST00000636238 BICDL1Q6ZP65 573 aa9.9□□□□□ -0.82
CIITA-214ENST00000636238 GPC2Q8N158 579 aa9.9□□□□□ -0.82
CIITA-214ENST00000636238 FMNL2Q96PY5 1086 aa9.9□□□□□ -0.82
CIITA-214ENST00000636238 ZNF652Q9Y2D9 606 aa9.9□□□□□ -0.82
CIITA-214ENST00000636238 SCN11AQ9UI33 1791 aa9.89□□□□□ -0.83
CIITA-214ENST00000636238 FZD9O00144 591 aa9.89□□□□□ -0.83
CIITA-214ENST00000636238 CA12O43570 354 aa9.89□□□□□ -0.83
CIITA-214ENST00000636238 CAMTA2O94983 1202 aa9.89□□□□□ -0.83
CIITA-214ENST00000636238 POTEIP0CG38 1075 aa9.89□□□□□ -0.83
CIITA-214ENST00000636238 POTEJP0CG39 1038 aa9.89□□□□□ -0.83
CIITA-214ENST00000636238 EPHX2P34913 555 aa9.89□□□□□ -0.83
CIITA-214ENST00000636238 LBX1P52954 281 aa9.89□□□□□ -0.83
CIITA-214ENST00000636238 TEFQ10587 303 aa9.89□□□□□ -0.83
CIITA-214ENST00000636238 MTHFSDQ2M296 383 aaKnown RBP9.89□□□□□ -0.83
CIITA-214ENST00000636238 GAS2L2Q8NHY3 880 aa9.89□□□□□ -0.83
CIITA-214ENST00000636238 ALDH1B1P30837 517 aa9.88□□□□□ -0.83
CIITA-214ENST00000636238 TPTE2Q6XPS3 522 aa9.88□□□□□ -0.83
CIITA-214ENST00000636238 CNTROBQ8N137 903 aa9.88□□□□□ -0.83
CIITA-214ENST00000636238 ZNF496Q96IT1 587 aaPredicted RBP9.88□□□□□ -0.83
CIITA-214ENST00000636238 PSMD1Q99460 953 aa9.88□□□□□ -0.83
CIITA-214ENST00000636238 BEGAINQ9BUH8 593 aa9.88□□□□□ -0.83
CIITA-214ENST00000636238 WDR33Q9C0J8 1336 aaKnown RBP9.87□□□□□ -0.83
CIITA-214ENST00000636238 SCN7AQ01118 1682 aa9.87□□□□□ -0.83
CIITA-214ENST00000636238 SCN4AP35499 1836 aa9.87□□□□□ -0.83
CIITA-214ENST00000636238 AFDNP55196 1824 aaKnown RBP9.87□□□□□ -0.83
CIITA-214ENST00000636238 GNAT3A8MTJ3 354 aa9.87□□□□□ -0.83
CIITA-214ENST00000636238 DIAPH1O60610 1272 aaKnown RBP9.87□□□□□ -0.83
CIITA-214ENST00000636238 MAP2K2P36507 400 aa9.87□□□□□ -0.83
CIITA-214ENST00000636238 MLLT1Q03111 559 aaPredicted RBP9.87□□□□□ -0.83
CIITA-214ENST00000636238 AMER1Q5JTC6 1135 aaPredicted RBP9.87□□□□□ -0.83
CIITA-214ENST00000636238 NBPF5PQ86XG9 351 aaPredicted RBP9.87□□□□□ -0.83
CIITA-214ENST00000636238 JDP2Q8WYK2 163 aa9.87□□□□□ -0.83
CIITA-214ENST00000636238 TBC1D2BQ9UPU7 963 aa9.87□□□□□ -0.83
CIITA-214ENST00000636238 FER1L6Q2WGJ9 1857 aa9.87□□□□□ -0.83
CIITA-214ENST00000636238 CEMIPQ8WUJ3 1361 aa9.87□□□□□ -0.83
CIITA-214ENST00000636238 IARSP41252 1262 aaKnown RBP9.86□□□□□ -0.83
CIITA-214ENST00000636238 EAPPQ56P03 285 aaPredicted RBP9.86□□□□□ -0.83
CIITA-214ENST00000636238 DZIP3Q86Y13 1208 aaKnown RBP9.86□□□□□ -0.83
CIITA-214ENST00000636238 HHIPL1Q96JK4 782 aa9.86□□□□□ -0.83
CIITA-214ENST00000636238 VPS33BQ9H267 617 aa9.86□□□□□ -0.83
CIITA-214ENST00000636238 DDX21Q9NR30 783 aaKnown RBP eCLIP9.86□□□□□ -0.83
CIITA-214ENST00000636238 ZNF219Q9P2Y4 722 aaPredicted RBP9.86□□□□□ -0.83
CIITA-214ENST00000636238 CLEC11AQ9Y240 323 aa9.86□□□□□ -0.83
CIITA-214ENST00000636238 UBR2Q8IWV8 1755 aa9.86□□□□□ -0.83
CIITA-214ENST00000636238 LMOD1P29536 600 aaPredicted RBP9.85□□□□□ -0.83
CIITA-214ENST00000636238 FAM161AQ3B820 660 aa9.85□□□□□ -0.83
CIITA-214ENST00000636238 USP50Q70EL3 339 aaPredicted RBP9.85□□□□□ -0.83
CIITA-214ENST00000636238 DICER1Q9UPY3 1922 aaKnown RBP9.85□□□□□ -0.83
CIITA-214ENST00000636238 ADAMTSL1Q8N6G6 1762 aa9.85□□□□□ -0.83
CIITA-214ENST00000636238 ZNF541Q9H0D2 1346 aa9.84□□□□□ -0.83
CIITA-214ENST00000636238 RIC1Q4ADV7 1423 aa9.84□□□□□ -0.83
CIITA-214ENST00000636238 HMOX1P09601 288 aa9.84□□□□□ -0.83
CIITA-214ENST00000636238 EIF6P56537 245 aaKnown RBP9.84□□□□□ -0.83
CIITA-214ENST00000636238 CRY2Q49AN0 593 aa9.84□□□□□ -0.83
CIITA-214ENST00000636238 IL17REQ8NFR9 667 aa9.84□□□□□ -0.83
CIITA-214ENST00000636238 CAPNS2Q96L46 248 aa9.84□□□□□ -0.83
CIITA-214ENST00000636238 PRKRIP1Q9H875 184 aaPredicted RBP9.84□□□□□ -0.83
CIITA-214ENST00000636238 ZNF277Q9NRM2 450 aaPredicted RBP9.84□□□□□ -0.83
CIITA-214ENST00000636238 ABT1Q9ULW3 272 aaKnown RBP9.84□□□□□ -0.83
CIITA-214ENST00000636238 THSD7BQ9C0I4 1608 aa9.84□□□□□ -0.83
CIITA-214ENST00000636238 IBTKQ9P2D0 1353 aaPredicted RBP9.84□□□□□ -0.83
CIITA-214ENST00000636238 NPC1L1Q9UHC9 1359 aa9.84□□□□□ -0.83
CIITA-214ENST00000636238 A1BGP04217 495 aa9.83□□□□□ -0.84
CIITA-214ENST00000636238 SNRPA1P09661 255 aaKnown RBP9.83□□□□□ -0.84
CIITA-214ENST00000636238 SYNE4Q8N205 404 aa9.83□□□□□ -0.84
CIITA-214ENST00000636238 YTHDC1Q96MU7 727 aaKnown RBP9.83□□□□□ -0.84
CIITA-214ENST00000636238 GPR101Q96P66 508 aaPredicted RBP9.83□□□□□ -0.84
CIITA-214ENST00000636238 NYXQ9GZU5 481 aa9.83□□□□□ -0.84
CIITA-214ENST00000636238 ZNF330Q9Y3S2 320 aaPredicted RBP9.83□□□□□ -0.84
CIITA-214ENST00000636238 TLL2Q9Y6L7 1015 aa9.83□□□□□ -0.84
CIITA-214ENST00000636238 ARFGEF2Q9Y6D5 1785 aa9.83□□□□□ -0.84
CIITA-214ENST00000636238 ANKRD31Q8N7Z5 1873 aa9.83□□□□□ -0.84
CIITA-214ENST00000636238 RNF123Q5XPI4 1314 aa9.82□□□□□ -0.84
CIITA-214ENST00000636238 CDHR2Q9BYE9 1310 aa9.82□□□□□ -0.84
CIITA-214ENST00000636238 SNED1Q8TER0 1413 aa9.82□□□□□ -0.84
CIITA-214ENST00000636238 COL11A2P13942 1736 aaPredicted RBP9.82□□□□□ -0.84
CIITA-214ENST00000636238 BTBD11A6QL63 1104 aa9.82□□□□□ -0.84
CIITA-214ENST00000636238 PER1O15534 1290 aaPredicted RBP9.82□□□□□ -0.84
CIITA-214ENST00000636238 HOXA10P31260 410 aaPredicted RBP9.82□□□□□ -0.84
CIITA-214ENST00000636238 MAP1SQ66K74 1059 aaPredicted RBP9.82□□□□□ -0.84
CIITA-214ENST00000636238 CCER2I3L3R5 266 aa9.81□□□□□ -0.84
CIITA-214ENST00000636238 HTATSF1O43719 755 aaKnown RBP9.81□□□□□ -0.84
CIITA-214ENST00000636238 BRPF1P55201 1214 aaPredicted RBP9.81□□□□□ -0.84
CIITA-214ENST00000636238 CCDC184Q52MB2 194 aa9.81□□□□□ -0.84
CIITA-214ENST00000636238 CC2D1BQ5T0F9 858 aaKnown RBP9.81□□□□□ -0.84
CIITA-214ENST00000636238 CCDC24Q8N4L8 307 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms