RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 KIF13BQ9NQT8 1826 aa26.18■■□□□ 1.78
PTCD3-220ENST00000627371 KIF6Q6ZMV9 814 aa26.18■■□□□ 1.78
PTCD3-220ENST00000627371 TTLL7Q6ZT98 887 aa26.18■■□□□ 1.78
PTCD3-220ENST00000627371 CDCA7LQ96GN5 454 aa26.18■■□□□ 1.78
PTCD3-220ENST00000627371 MAP3K15Q6ZN16 1313 aa26.17■■□□□ 1.78
PTCD3-220ENST00000627371 TM4SF1P30408 202 aa26.17■■□□□ 1.78
PTCD3-220ENST00000627371 CLEC4GQ6UXB4 293 aa26.17■■□□□ 1.78
PTCD3-220ENST00000627371 ZNF652Q9Y2D9 606 aa26.17■■□□□ 1.78
PTCD3-220ENST00000627371 ANKRD36CQ5JPF3 1778 aa26.17■■□□□ 1.78
PTCD3-220ENST00000627371 ERVV-1B6SEH8 477 aa26.16■■□□□ 1.78
PTCD3-220ENST00000627371 VAMP4O75379 141 aa26.16■■□□□ 1.78
PTCD3-220ENST00000627371 NFIXQ14938 502 aa26.16■■□□□ 1.78
PTCD3-220ENST00000627371 HYPKQ9NX55 129 aa26.16■■□□□ 1.78
PTCD3-220ENST00000627371 DDR1Q08345 913 aa26.15■■□□□ 1.78
PTCD3-220ENST00000627371 TRMT2AQ8IZ69 625 aaKnown RBP26.15■■□□□ 1.78
PTCD3-220ENST00000627371 XAGE3Q8WTP9 111 aa26.15■■□□□ 1.78
PTCD3-220ENST00000627371 PARP3Q9Y6F1 533 aa26.15■■□□□ 1.78
PTCD3-220ENST00000627371 POLRMTO00411 1230 aaKnown RBP26.14■■□□□ 1.78
PTCD3-220ENST00000627371 TBC1D9BQ66K14 1250 aa26.14■■□□□ 1.78
PTCD3-220ENST00000627371 COPS6Q7L5N1 327 aa26.14■■□□□ 1.78
PTCD3-220ENST00000627371 ARFGEF2Q9Y6D5 1785 aa26.14■■□□□ 1.78
PTCD3-220ENST00000627371 HLFQ16534 295 aa26.13■■□□□ 1.77
PTCD3-220ENST00000627371 FHDC1Q9C0D6 1143 aaPredicted RBP26.13■■□□□ 1.77
PTCD3-220ENST00000627371 ZBED9Q6R2W3 1325 aa26.13■■□□□ 1.77
PTCD3-220ENST00000627371 AIMP1Q12904 312 aaKnown RBP26.12■■□□□ 1.77
PTCD3-220ENST00000627371 STK31Q9BXU1 1019 aa26.12■■□□□ 1.77
PTCD3-220ENST00000627371 ZBTB3Q9H5J0 574 aa26.12■■□□□ 1.77
PTCD3-220ENST00000627371 CARMIL3Q8ND23 1372 aa26.11■■□□□ 1.77
PTCD3-220ENST00000627371 BICDL1Q6ZP65 573 aa26.11■■□□□ 1.77
PTCD3-220ENST00000627371 ATP10DQ9P241 1426 aa26.11■■□□□ 1.77
PTCD3-220ENST00000627371 C10orf71Q711Q0 1435 aa26.1■■□□□ 1.77
PTCD3-220ENST00000627371 GIGYF2Q6Y7W6 1299 aaKnown RBP26.09■■□□□ 1.77
PTCD3-220ENST00000627371 SETDB2Q96T68 719 aa26.09■■□□□ 1.77
PTCD3-220ENST00000627371 PHAXQ9H814 394 aaKnown RBP26.09■■□□□ 1.77
PTCD3-220ENST00000627371 TCERG1O14776 1098 aaKnown RBP26.08■■□□□ 1.77
PTCD3-220ENST00000627371 KLHL34Q8N239 644 aa26.08■■□□□ 1.77
PTCD3-220ENST00000627371 SYT17Q9BSW7 474 aa26.08■■□□□ 1.77
PTCD3-220ENST00000627371 CD2APQ9Y5K6 639 aa26.08■■□□□ 1.77
PTCD3-220ENST00000627371 KIAA1551Q9HCM1 1747 aa26.08■■□□□ 1.76
PTCD3-220ENST00000627371 SERPINB2P05120 415 aa26.07■■□□□ 1.76
PTCD3-220ENST00000627371 PLBD2Q8NHP8 589 aa26.07■■□□□ 1.76
PTCD3-220ENST00000627371 NIP7Q9Y221 180 aaKnown RBP eCLIP26.07■■□□□ 1.76
PTCD3-220ENST00000627371 ANKRD13DQ6ZTN6 518 aa26.06■■□□□ 1.76
PTCD3-220ENST00000627371 ANKRD31Q8N7Z5 1873 aa26.05■■□□□ 1.76
PTCD3-220ENST00000627371 SLC4A2P04920 1241 aa26.05■■□□□ 1.76
PTCD3-220ENST00000627371 HSP90AB3PQ58FF7 597 aa26.04■■□□□ 1.76
PTCD3-220ENST00000627371 N4BP2Q86UW6 1770 aaPredicted RBP26.04■■□□□ 1.76
PTCD3-220ENST00000627371 ZNF34Q8IZ26 560 aa26.03■■□□□ 1.76
PTCD3-220ENST00000627371 DDX58O95786 925 aaKnown RBP26.02■■□□□ 1.76
PTCD3-220ENST00000627371 CT47B1P0C2W7 299 aaPredicted RBP26.02■■□□□ 1.76
PTCD3-220ENST00000627371 ZNF428Q96B54 188 aa26.02■■□□□ 1.76
PTCD3-220ENST00000627371 GPTP24298 496 aa26.01■■□□□ 1.75
PTCD3-220ENST00000627371 BRCA1P38398 1863 aaKnown RBP26.01■■□□□ 1.75
PTCD3-220ENST00000627371 UBN2Q6ZU65 1347 aa26.01■■□□□ 1.75
PTCD3-220ENST00000627371 G2E3Q7L622 706 aa26.01■■□□□ 1.75
PTCD3-220ENST00000627371 NLGN2Q8NFZ4 835 aa26.01■■□□□ 1.75
PTCD3-220ENST00000627371 IBTKQ9P2D0 1353 aaPredicted RBP26.01■■□□□ 1.75
PTCD3-220ENST00000627371 DLEC1Q9Y238 1755 aa26■■□□□ 1.75
PTCD3-220ENST00000627371 FLIIQ13045 1269 aa26■■□□□ 1.75
PTCD3-220ENST00000627371 TCIRG1Q13488 830 aa26■■□□□ 1.75
PTCD3-220ENST00000627371 PRR5LQ6MZQ0 368 aa26■■□□□ 1.75
PTCD3-220ENST00000627371 RIC3Q7Z5B4 369 aa26■■□□□ 1.75
PTCD3-220ENST00000627371 NBPF5PQ86XG9 351 aaPredicted RBP26■■□□□ 1.75
PTCD3-220ENST00000627371 CNBD1Q8NA66 436 aa26■■□□□ 1.75
PTCD3-220ENST00000627371 PXDNLA1KZ92 1463 aa25.99■■□□□ 1.75
PTCD3-220ENST00000627371 PARP10Q53GL7 1025 aa25.99■■□□□ 1.75
PTCD3-220ENST00000627371 ADCY9O60503 1353 aa25.97■■□□□ 1.75
PTCD3-220ENST00000627371 TGFB2P61812 414 aa25.97■■□□□ 1.75
PTCD3-220ENST00000627371 KSR2Q6VAB6 950 aa25.97■■□□□ 1.75
PTCD3-220ENST00000627371 TPTE2Q6XPS3 522 aa25.97■■□□□ 1.75
PTCD3-220ENST00000627371 NYXQ9GZU5 481 aa25.97■■□□□ 1.75
PTCD3-220ENST00000627371 NPHP1O15259 732 aa25.96■■□□□ 1.75
PTCD3-220ENST00000627371 ST5P78524 1137 aa25.96■■□□□ 1.75
PTCD3-220ENST00000627371 SUSD4Q5VX71 490 aa25.96■■□□□ 1.75
PTCD3-220ENST00000627371 ISCA1Q9BUE6 129 aa25.96■■□□□ 1.75
PTCD3-220ENST00000627371 COL11A2P13942 1736 aaPredicted RBP25.96■■□□□ 1.75
PTCD3-220ENST00000627371 GOLGB1Q14789 3259 aaKnown RBP25.96■■□□□ 1.75
PTCD3-220ENST00000627371 PI4KAP2A4QPH2 592 aa25.95■■□□□ 1.74
PTCD3-220ENST00000627371 FAM177BA6PVY3 158 aa25.95■■□□□ 1.74
PTCD3-220ENST00000627371 FKBP5Q13451 457 aaPredicted RBP25.95■■□□□ 1.74
PTCD3-220ENST00000627371 ALDH1L2Q3SY69 923 aa25.95■■□□□ 1.74
PTCD3-220ENST00000627371 NLRP10Q86W26 655 aa25.95■■□□□ 1.74
PTCD3-220ENST00000627371 PI4KAP1Q8N8J0 262 aa25.95■■□□□ 1.74
PTCD3-220ENST00000627371 SSH1Q8WYL5 1049 aa25.95■■□□□ 1.74
PTCD3-220ENST00000627371 MAP3K2Q9Y2U5 619 aa25.95■■□□□ 1.74
PTCD3-220ENST00000627371 PPP1R42Q7Z4L9 355 aa25.94■■□□□ 1.74
PTCD3-220ENST00000627371 MRPL50Q8N5N7 158 aaKnown RBP25.94■■□□□ 1.74
PTCD3-220ENST00000627371 METTL22Q9BUU2 404 aaPredicted RBP25.94■■□□□ 1.74
PTCD3-220ENST00000627371 BRIP1Q9BX63 1249 aa25.94■■□□□ 1.74
PTCD3-220ENST00000627371 TNRC6CQ9HCJ0 1690 aaKnown RBP25.93■■□□□ 1.74
PTCD3-220ENST00000627371 NTSR2O95665 410 aa25.93■■□□□ 1.74
PTCD3-220ENST00000627371 CCDC24Q8N4L8 307 aa25.93■■□□□ 1.74
PTCD3-220ENST00000627371 RNF123Q5XPI4 1314 aa25.92■■□□□ 1.74
PTCD3-220ENST00000627371 ATP5J2-PTCD1G3V325 749 aa25.92■■□□□ 1.74
PTCD3-220ENST00000627371 TRIM28Q13263 835 aaKnown RBP25.92■■□□□ 1.74
PTCD3-220ENST00000627371 MYD88Q99836 296 aa25.92■■□□□ 1.74
PTCD3-220ENST00000627371 ABCC12Q96J65 1359 aa25.92■■□□□ 1.74
PTCD3-220ENST00000627371 RIC1Q4ADV7 1423 aa25.91■■□□□ 1.74
PTCD3-220ENST00000627371 GTF2E1P29083 439 aaPredicted RBP25.91■■□□□ 1.74
PTCD3-220ENST00000627371 NUTM1Q86Y26 1132 aa25.91■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms