RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 RPAP2Q8IXW5 612 aaPredicted RBP12.98□□□□□ -0.33
VPS11-208ENST00000621676 NRKQ7Z2Y5 1582 aa12.98□□□□□ -0.33
VPS11-208ENST00000621676 HSP90AB1P08238 724 aaKnown RBP12.98□□□□□ -0.33
VPS11-208ENST00000621676 G3BP1Q13283 466 aaKnown RBP eCLIP12.98□□□□□ -0.331e-6■■■■□ 23
VPS11-208ENST00000621676 PUS3Q9BZE2 481 aaKnown RBP12.98□□□□□ -0.33
VPS11-208ENST00000621676 GCC1Q96CN9 775 aa12.97□□□□□ -0.33
VPS11-208ENST00000621676 IFIT2P09913 472 aaKnown RBP12.97□□□□□ -0.33
VPS11-208ENST00000621676 ATP8B2P98198 1209 aa12.97□□□□□ -0.33
VPS11-208ENST00000621676 RHPN1Q8TCX5 695 aa12.97□□□□□ -0.33
VPS11-208ENST00000621676 LTN1O94822 1766 aa12.97□□□□□ -0.33
VPS11-208ENST00000621676 NWD1Q149M9 1564 aa12.97□□□□□ -0.33
VPS11-208ENST00000621676 CHMP4CQ96CF2 233 aa12.96□□□□□ -0.33
VPS11-208ENST00000621676 JAG2Q9Y219 1238 aa12.96□□□□□ -0.33
VPS11-208ENST00000621676 TOPAZ1Q8N9V7 1692 aa12.96□□□□□ -0.33
VPS11-208ENST00000621676 STRCQ7RTU9 1775 aa12.96□□□□□ -0.33
VPS11-208ENST00000621676 NEURL1BA8MQ27 555 aa12.96□□□□□ -0.33
VPS11-208ENST00000621676 UPF3BQ9BZI7 483 aaKnown RBP12.96□□□□□ -0.33
VPS11-208ENST00000621676 PDE1AP54750 535 aa12.95□□□□□ -0.34
VPS11-208ENST00000621676 GCKRQ14397 625 aa12.95□□□□□ -0.34
VPS11-208ENST00000621676 CHMP4BQ9H444 224 aaKnown RBP12.95□□□□□ -0.34
VPS11-208ENST00000621676 TRMT112Q9UI30 125 aaKnown RBP12.95□□□□□ -0.34
VPS11-208ENST00000621676 ANKRD26Q9UPS8 1709 aa12.95□□□□□ -0.34
VPS11-208ENST00000621676 CPA1P15085 419 aa12.95□□□□□ -0.34
VPS11-208ENST00000621676 MX1P20591 662 aa12.95□□□□□ -0.34
VPS11-208ENST00000621676 LRRC24Q50LG9 513 aa12.95□□□□□ -0.34
VPS11-208ENST00000621676 SLC51AQ86UW1 340 aa12.95□□□□□ -0.34
VPS11-208ENST00000621676 KAZALD1Q96I82 304 aa12.95□□□□□ -0.34
VPS11-208ENST00000621676 ANP32EQ9BTT0 268 aa12.95□□□□□ -0.34
VPS11-208ENST00000621676 RGS12O14924 1447 aa12.95□□□□□ -0.34
VPS11-208ENST00000621676 LINS1Q8NG48 757 aa12.95□□□□□ -0.34
VPS11-208ENST00000621676 TCEANC2Q96MN5 208 aa12.95□□□□□ -0.34
VPS11-208ENST00000621676 WTIPA6NIX2 430 aaPredicted RBP12.94□□□□□ -0.34
VPS11-208ENST00000621676 STARD3NLO95772 234 aa12.94□□□□□ -0.34
VPS11-208ENST00000621676 IL25Q9H293 177 aa12.94□□□□□ -0.34
VPS11-208ENST00000621676 SRP68Q9UHB9 627 aaKnown RBP12.94□□□□□ -0.34
VPS11-208ENST00000621676 COL5A2P05997 1499 aaPredicted RBP12.94□□□□□ -0.34
VPS11-208ENST00000621676 TFCP2Q12800 502 aa12.93□□□□□ -0.34
VPS11-208ENST00000621676 GORABQ5T7V8 394 aa12.93□□□□□ -0.34
VPS11-208ENST00000621676 DZIP3Q86Y13 1208 aaKnown RBP12.93□□□□□ -0.34
VPS11-208ENST00000621676 CLASRPQ8N2M8 674 aaKnown RBP12.93□□□□□ -0.34
VPS11-208ENST00000621676 CERKQ8TCT0 537 aa12.93□□□□□ -0.34
VPS11-208ENST00000621676 ZNF142P52746 1687 aaPredicted RBP12.93□□□□□ -0.34
VPS11-208ENST00000621676 TRIM37O94972 964 aa12.93□□□□□ -0.34
VPS11-208ENST00000621676 KCNJ4P48050 445 aa12.93□□□□□ -0.34
VPS11-208ENST00000621676 QTRT2Q9H974 415 aaKnown RBP12.93□□□□□ -0.34
VPS11-208ENST00000621676 KDM4AO75164 1064 aa12.93□□□□□ -0.34
VPS11-208ENST00000621676 CD2BP2O95400 341 aaKnown RBP12.93□□□□□ -0.34
VPS11-208ENST00000621676 FKBP4Q02790 459 aaKnown RBP eCLIP12.93□□□□□ -0.34
VPS11-208ENST00000621676 CHAMP1Q96JM3 812 aa12.93□□□□□ -0.34
VPS11-208ENST00000621676 METTL22Q9BUU2 404 aaPredicted RBP12.93□□□□□ -0.34
VPS11-208ENST00000621676 KIF6Q6ZMV9 814 aa12.92□□□□□ -0.34
VPS11-208ENST00000621676 DDX46Q7L014 1031 aaKnown RBP12.92□□□□□ -0.34
VPS11-208ENST00000621676 EAF2Q96CJ1 260 aaPredicted RBP12.92□□□□□ -0.34
VPS11-208ENST00000621676 LOC102724428A0A0B4J2F2 783 aa12.92□□□□□ -0.34
VPS11-208ENST00000621676 TAF5LO75529 589 aa12.92□□□□□ -0.34
VPS11-208ENST00000621676 SIK1P57059 783 aa12.92□□□□□ -0.34
VPS11-208ENST00000621676 ITPK1Q13572 414 aa12.92□□□□□ -0.34
VPS11-208ENST00000621676 PI16Q6UXB8 463 aa12.92□□□□□ -0.34
VPS11-208ENST00000621676 GZF1Q9H116 711 aaPredicted RBP12.92□□□□□ -0.34
VPS11-208ENST00000621676 KIF24Q5T7B8 1368 aa12.92□□□□□ -0.34
VPS11-208ENST00000621676 NAP1L2Q9ULW6 460 aaPredicted RBP12.91□□□□□ -0.34
VPS11-208ENST00000621676 AFF2P51816 1311 aa12.91□□□□□ -0.34
VPS11-208ENST00000621676 BRPF1P55201 1214 aaPredicted RBP12.91□□□□□ -0.34
VPS11-208ENST00000621676 TTC22Q5TAA0 569 aa12.91□□□□□ -0.34
VPS11-208ENST00000621676 ZNF219Q9P2Y4 722 aaPredicted RBP12.91□□□□□ -0.34
VPS11-208ENST00000621676 NCBP3Q53F19 620 aaKnown RBP12.9□□□□□ -0.34
VPS11-208ENST00000621676 CRKLP46109 303 aaKnown RBP12.9□□□□□ -0.34
VPS11-208ENST00000621676 SLC4A8Q2Y0W8 1093 aa12.9□□□□□ -0.34
VPS11-208ENST00000621676 DBNDD2Q9BQY9 259 aa12.9□□□□□ -0.34
VPS11-208ENST00000621676 NIP7Q9Y221 180 aaKnown RBP eCLIP12.9□□□□□ -0.34
VPS11-208ENST00000621676 ERVV-2B6SEH9 535 aa12.9□□□□□ -0.35
VPS11-208ENST00000621676 GNPATO15228 680 aa12.9□□□□□ -0.35
VPS11-208ENST00000621676 CWC25Q9NXE8 425 aaPredicted RBP12.9□□□□□ -0.35
VPS11-208ENST00000621676 HEG1Q9ULI3 1381 aa12.89□□□□□ -0.35
VPS11-208ENST00000621676 SPATA31A1Q5TZJ5 1347 aa12.89□□□□□ -0.35
VPS11-208ENST00000621676 SASH1O94885 1247 aa12.89□□□□□ -0.35
VPS11-208ENST00000621676 AMIGO3Q86WK7 504 aa12.89□□□□□ -0.35
VPS11-208ENST00000621676 TBC1D2Q9BYX2 928 aa12.89□□□□□ -0.35
VPS11-208ENST00000621676 SEC31BQ9NQW1 1179 aa12.89□□□□□ -0.35
VPS11-208ENST00000621676 CCDC129Q6ZRS4 1044 aa12.89□□□□□ -0.35
VPS11-208ENST00000621676 SEPT12Q8IYM1 358 aa12.89□□□□□ -0.35
VPS11-208ENST00000621676 SEC62Q99442 399 aaKnown RBP12.89□□□□□ -0.35
VPS11-208ENST00000621676 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.89□□□□□ -0.35
VPS11-208ENST00000621676 FRAT2O75474 233 aaPredicted RBP12.88□□□□□ -0.35
VPS11-208ENST00000621676 PCNTO95613 3336 aa12.88□□□□□ -0.35
VPS11-208ENST00000621676 CDC45O75419 566 aa12.88□□□□□ -0.35
VPS11-208ENST00000621676 CCDC57Q2TAC2 916 aa12.88□□□□□ -0.35
VPS11-208ENST00000621676 CNNM1Q9NRU3 951 aa12.88□□□□□ -0.35
VPS11-208ENST00000621676 PLBD2Q8NHP8 589 aa12.88□□□□□ -0.35
VPS11-208ENST00000621676 FAM227BQ96M60 508 aa12.88□□□□□ -0.35
VPS11-208ENST00000621676 ATP10DQ9P241 1426 aa12.88□□□□□ -0.35
VPS11-208ENST00000621676 FSD1Q9BTV5 496 aa12.87□□□□□ -0.35
VPS11-208ENST00000621676 KIF1BPQ96EK5 621 aa12.87□□□□□ -0.35
VPS11-208ENST00000621676 GREM2Q9H772 168 aa12.87□□□□□ -0.35
VPS11-208ENST00000621676 DCCP43146 1447 aa12.87□□□□□ -0.35
VPS11-208ENST00000621676 FOSBP53539 338 aa12.87□□□□□ -0.35
VPS11-208ENST00000621676 MSL1Q68DK7 614 aa12.87□□□□□ -0.35
VPS11-208ENST00000621676 LDHAL6AQ6ZMR3 332 aa12.87□□□□□ -0.35
VPS11-208ENST00000621676 CPDO75976 1380 aa12.86□□□□□ -0.35
VPS11-208ENST00000621676 NCOA3Q9Y6Q9 1424 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms