RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 KCNH5Q8NCM2 988 aa12.93□□□□□ -0.34
UPF3A-212ENST00000619079 KRT222Q8N1A0 295 aa12.92□□□□□ -0.34
UPF3A-212ENST00000619079 ESYT1Q9BSJ8 1104 aa12.92□□□□□ -0.34
UPF3A-212ENST00000619079 SRCIN1Q9C0H9 1055 aa12.92□□□□□ -0.34
UPF3A-212ENST00000619079 MBIPQ9NS73 344 aa12.92□□□□□ -0.34
UPF3A-212ENST00000619079 SMARCA5O60264 1052 aaPredicted RBP12.92□□□□□ -0.34
UPF3A-212ENST00000619079 CCDC192P0DO97 292 aa12.92□□□□□ -0.34
UPF3A-212ENST00000619079 TIGD1Q96MW7 591 aa12.92□□□□□ -0.34
UPF3A-212ENST00000619079 USP31Q70CQ4 1352 aa12.91□□□□□ -0.34
UPF3A-212ENST00000619079 IGSF3O75054 1194 aa12.91□□□□□ -0.34
UPF3A-212ENST00000619079 TERF2Q15554 542 aa12.91□□□□□ -0.34
UPF3A-212ENST00000619079 CCDC112Q8NEF3 446 aa12.91□□□□□ -0.34
UPF3A-212ENST00000619079 DNAJC2Q99543 621 aaKnown RBP12.91□□□□□ -0.34
UPF3A-212ENST00000619079 PRDM11Q9NQV5 511 aa12.91□□□□□ -0.34
UPF3A-212ENST00000619079 OVOS2A0A0J9YW53 1432 aa12.91□□□□□ -0.34
UPF3A-212ENST00000619079 OVOS2Q6IE36 1432 aa12.91□□□□□ -0.34
UPF3A-212ENST00000619079 ZSCAN22P10073 491 aaPredicted RBP12.91□□□□□ -0.34
UPF3A-212ENST00000619079 PDE1AP54750 535 aa12.91□□□□□ -0.34
UPF3A-212ENST00000619079 C8orf37Q96NL8 207 aa12.91□□□□□ -0.34
UPF3A-212ENST00000619079 CALCOCO1Q9P1Z2 691 aa12.91□□□□□ -0.34
UPF3A-212ENST00000619079 FBLN1P23142 703 aa12.9□□□□□ -0.34
UPF3A-212ENST00000619079 KIF18AQ8NI77 898 aa12.9□□□□□ -0.34
UPF3A-212ENST00000619079 MED1Q15648 1581 aaPredicted RBP12.9□□□□□ -0.34
UPF3A-212ENST00000619079 TSPYL1Q9H0U9 437 aa12.9□□□□□ -0.34
UPF3A-212ENST00000619079 CNPY2Q9Y2B0 182 aa12.9□□□□□ -0.34
UPF3A-212ENST00000619079 FOXD4L6Q3SYB3 417 aaPredicted RBP12.89□□□□□ -0.35
UPF3A-212ENST00000619079 FOXD4L3Q6VB84 417 aaPredicted RBP12.89□□□□□ -0.35
UPF3A-212ENST00000619079 FAM200AQ8TCP9 573 aa12.89□□□□□ -0.35
UPF3A-212ENST00000619079 KIAA0232Q92628 1395 aa12.89□□□□□ -0.35
UPF3A-212ENST00000619079 ELL2O00472 640 aaPredicted RBP12.89□□□□□ -0.35
UPF3A-212ENST00000619079 RRS1Q15050 365 aaKnown RBP12.89□□□□□ -0.35
UPF3A-212ENST00000619079 CHRNA2Q15822 529 aa12.89□□□□□ -0.35
UPF3A-212ENST00000619079 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.89□□□□□ -0.35
UPF3A-212ENST00000619079 SPC24Q8NBT2 197 aa12.89□□□□□ -0.35
UPF3A-212ENST00000619079 ZNF397Q8NF99 534 aaPredicted RBP12.89□□□□□ -0.35
UPF3A-212ENST00000619079 NGLY1Q96IV0 654 aa12.89□□□□□ -0.35
UPF3A-212ENST00000619079 ANO2Q9NQ90 1003 aa12.89□□□□□ -0.35
UPF3A-212ENST00000619079 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.89□□□□□ -0.35
UPF3A-212ENST00000619079 COL22A1Q8NFW1 1626 aaPredicted RBP12.88□□□□□ -0.35
UPF3A-212ENST00000619079 KIF20BQ96Q89 1820 aa12.88□□□□□ -0.35
UPF3A-212ENST00000619079 TNNT1P13805 278 aa12.88□□□□□ -0.35
UPF3A-212ENST00000619079 KCNJ4P48050 445 aa12.88□□□□□ -0.35
UPF3A-212ENST00000619079 IRX5P78411 483 aaPredicted RBP12.88□□□□□ -0.35
UPF3A-212ENST00000619079 GIMAP6Q6P9H5 292 aa12.88□□□□□ -0.35
UPF3A-212ENST00000619079 NOL8Q76FK4 1167 aaKnown RBP12.88□□□□□ -0.35
UPF3A-212ENST00000619079 PALD1Q9ULE6 856 aa12.88□□□□□ -0.35
UPF3A-212ENST00000619079 PTPRCP08575 1304 aa12.88□□□□□ -0.35
UPF3A-212ENST00000619079 AP5Z1O43299 807 aa12.87□□□□□ -0.35
UPF3A-212ENST00000619079 STX6O43752 255 aa12.87□□□□□ -0.35
UPF3A-212ENST00000619079 LRP6O75581 1613 aa12.87□□□□□ -0.35
UPF3A-212ENST00000619079 PTGS1P23219 599 aa12.87□□□□□ -0.35
UPF3A-212ENST00000619079 AMPHP49418 695 aa12.87□□□□□ -0.35
UPF3A-212ENST00000619079 C8orf58Q8NAV2 365 aa12.87□□□□□ -0.35
UPF3A-212ENST00000619079 C16orf45Q96MC5 204 aaPredicted RBP12.87□□□□□ -0.35
UPF3A-212ENST00000619079 APBB1O00213 710 aa12.87□□□□□ -0.35
UPF3A-212ENST00000619079 F13A1P00488 732 aa12.87□□□□□ -0.35
UPF3A-212ENST00000619079 THUMPD2Q9BTF0 503 aaKnown RBP12.87□□□□□ -0.35
UPF3A-212ENST00000619079 SLIT3O75094 1523 aa12.86□□□□□ -0.35
UPF3A-212ENST00000619079 FIBPO43427 364 aa12.86□□□□□ -0.35
UPF3A-212ENST00000619079 SLFNL1Q499Z3 407 aa12.86□□□□□ -0.35
UPF3A-212ENST00000619079 FAM83GA6ND36 823 aa12.86□□□□□ -0.35
UPF3A-212ENST00000619079 PDIA4P13667 645 aaKnown RBP12.86□□□□□ -0.35
UPF3A-212ENST00000619079 CHMLP26374 656 aa12.86□□□□□ -0.35
UPF3A-212ENST00000619079 PHRF1Q9P1Y6 1649 aaKnown RBP12.85□□□□□ -0.35
UPF3A-212ENST00000619079 MAP3K19Q56UN5 1328 aa12.85□□□□□ -0.35
UPF3A-212ENST00000619079 CCDC171Q6TFL3 1326 aa12.85□□□□□ -0.35
UPF3A-212ENST00000619079 RNF20Q5VTR2 975 aa12.85□□□□□ -0.35
UPF3A-212ENST00000619079 ARHGEF25Q86VW2 580 aa12.85□□□□□ -0.35
UPF3A-212ENST00000619079 UPF3BQ9BZI7 483 aaKnown RBP12.85□□□□□ -0.35
UPF3A-212ENST00000619079 BCL11BQ9C0K0 894 aaPredicted RBP12.85□□□□□ -0.35
UPF3A-212ENST00000619079 SYT1P21579 422 aa12.84□□□□□ -0.35
UPF3A-212ENST00000619079 CCDC186Q7Z3E2 898 aa12.84□□□□□ -0.35
UPF3A-212ENST00000619079 PHACTR3Q96KR7 559 aa12.84□□□□□ -0.35
UPF3A-212ENST00000619079 BTG4Q9NY30 223 aa12.84□□□□□ -0.35
UPF3A-212ENST00000619079 FAM53CQ9NYF3 392 aa12.84□□□□□ -0.35
UPF3A-212ENST00000619079 EMILIN1Q9Y6C2 1016 aa12.84□□□□□ -0.35
UPF3A-212ENST00000619079 TCHHQ07283 1943 aa12.84□□□□□ -0.35
UPF3A-212ENST00000619079 HSPA4P34932 840 aa12.84□□□□□ -0.35
UPF3A-212ENST00000619079 MAP3K11Q16584 847 aa12.84□□□□□ -0.35
UPF3A-212ENST00000619079 TPD52L1Q16890 204 aaPredicted RBP12.84□□□□□ -0.35
UPF3A-212ENST00000619079 AEBP1Q8IUX7 1158 aa12.84□□□□□ -0.35
UPF3A-212ENST00000619079 DRC7Q8IY82 874 aa12.84□□□□□ -0.35
UPF3A-212ENST00000619079 SMC3Q9UQE7 1217 aa12.84□□□□□ -0.35
UPF3A-212ENST00000619079 CPDO75976 1380 aa12.84□□□□□ -0.35
UPF3A-212ENST00000619079 SALL3Q9BXA9 1300 aa12.84□□□□□ -0.35
UPF3A-212ENST00000619079 NEMFO60524 1076 aa12.83□□□□□ -0.35
UPF3A-212ENST00000619079 EVA1CP58658 441 aa12.83□□□□□ -0.35
UPF3A-212ENST00000619079 CEP135Q66GS9 1140 aa12.83□□□□□ -0.35
UPF3A-212ENST00000619079 ZSCAN25Q6NSZ9 544 aa12.83□□□□□ -0.35
UPF3A-212ENST00000619079 STRN4Q9NRL3 753 aa12.83□□□□□ -0.35
UPF3A-212ENST00000619079 ABCA3Q99758 1704 aa12.83□□□□□ -0.36
UPF3A-212ENST00000619079 AOX1Q06278 1338 aa12.83□□□□□ -0.36
UPF3A-212ENST00000619079 TULP2O00295 520 aa12.83□□□□□ -0.36
UPF3A-212ENST00000619079 LIMCH1Q9UPQ0 1083 aa12.83□□□□□ -0.36
UPF3A-212ENST00000619079 NFAT5O94916 1531 aa12.83□□□□□ -0.36
UPF3A-212ENST00000619079 MARF1Q9Y4F3 1742 aaKnown RBP12.82□□□□□ -0.36
UPF3A-212ENST00000619079 CSB-PGBD3P0DP91 1061 aa12.82□□□□□ -0.36
UPF3A-212ENST00000619079 LTV1Q96GA3 475 aaPredicted RBP12.82□□□□□ -0.36
UPF3A-212ENST00000619079 ERO1AQ96HE7 468 aa12.82□□□□□ -0.36
UPF3A-212ENST00000619079 MEIS3Q99687 375 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms