RNA–Protein interactions for RNA: ENST00000609024.5

CHMP4A-211, Transcript of charged multivesicular body protein 4A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4A, Length 735 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-211ENST00000609024 NBPF5PQ86XG9 351 aaPredicted RBP23.32■■□□□ 1.32
CHMP4A-211ENST00000609024 COL11A2P13942 1736 aaPredicted RBP23.31■■□□□ 1.32
CHMP4A-211ENST00000609024 BTBD11A6QL63 1104 aa23.31■■□□□ 1.32
CHMP4A-211ENST00000609024 CNGB1Q14028 1251 aaPredicted RBP23.31■■□□□ 1.32
CHMP4A-211ENST00000609024 IL17REQ8NFR9 667 aa23.31■■□□□ 1.32
CHMP4A-211ENST00000609024 CLEC11AQ9Y240 323 aa23.31■■□□□ 1.32
CHMP4A-211ENST00000609024 ZNF652Q9Y2D9 606 aa23.31■■□□□ 1.32
CHMP4A-211ENST00000609024 POTEIP0CG38 1075 aa23.3■■□□□ 1.32
CHMP4A-211ENST00000609024 POTEJP0CG39 1038 aa23.3■■□□□ 1.32
CHMP4A-211ENST00000609024 CCDC93Q567U6 631 aa23.3■■□□□ 1.32
CHMP4A-211ENST00000609024 EAPPQ56P03 285 aaPredicted RBP23.3■■□□□ 1.32
CHMP4A-211ENST00000609024 CACNA1SQ13698 1873 aa23.3■■□□□ 1.32
CHMP4A-211ENST00000609024 CAMTA2O94983 1202 aa23.29■■□□□ 1.32
CHMP4A-211ENST00000609024 SLX4Q8IY92 1834 aa23.28■■□□□ 1.32
CHMP4A-211ENST00000609024 KIF7Q2M1P5 1343 aa23.28■■□□□ 1.32
CHMP4A-211ENST00000609024 CNTNAP1P78357 1384 aa23.27■■□□□ 1.32
CHMP4A-211ENST00000609024 TMEM88BA6NKF7 163 aa23.27■■□□□ 1.32
CHMP4A-211ENST00000609024 NPR1P16066 1061 aa23.27■■□□□ 1.32
CHMP4A-211ENST00000609024 TAF1DQ9H5J8 278 aaPredicted RBP23.27■■□□□ 1.32
CHMP4A-211ENST00000609024 FOXN1O15353 648 aa23.26■■□□□ 1.31
CHMP4A-211ENST00000609024 CLEC4GQ6UXB4 293 aa23.26■■□□□ 1.31
CHMP4A-211ENST00000609024 TPTE2Q6XPS3 522 aa23.26■■□□□ 1.31
CHMP4A-211ENST00000609024 CCER1Q8TC90 406 aaPredicted RBP23.26■■□□□ 1.31
CHMP4A-211ENST00000609024 CTCFP49711 727 aaPredicted RBP23.25■■□□□ 1.31
CHMP4A-211ENST00000609024 L3MBTL3Q96JM7 780 aaPredicted RBP23.25■■□□□ 1.31
CHMP4A-211ENST00000609024 PRDM10Q9NQV6 1147 aa23.25■■□□□ 1.31
CHMP4A-211ENST00000609024 HACL1Q9UJ83 578 aa23.25■■□□□ 1.31
CHMP4A-211ENST00000609024 SCN4AP35499 1836 aa23.24■■□□□ 1.31
CHMP4A-211ENST00000609024 GTF2E1P29083 439 aaPredicted RBP23.24■■□□□ 1.31
CHMP4A-211ENST00000609024 FKBP4Q02790 459 aaKnown RBP eCLIP23.24■■□□□ 1.31
CHMP4A-211ENST00000609024 RTF1Q92541 710 aaKnown RBP23.24■■□□□ 1.31
CHMP4A-211ENST00000609024 ARFGEF2Q9Y6D5 1785 aa23.23■■□□□ 1.31
CHMP4A-211ENST00000609024 PNMA8AQ86V59 439 aaPredicted RBP23.23■■□□□ 1.31
CHMP4A-211ENST00000609024 RTKN2Q8IZC4 609 aa23.23■■□□□ 1.31
CHMP4A-211ENST00000609024 CFAP53Q96M91 514 aa23.23■■□□□ 1.31
CHMP4A-211ENST00000609024 PASKQ96RG2 1323 aa23.23■■□□□ 1.31
CHMP4A-211ENST00000609024 PIP4K2AP48426 406 aaPredicted RBP23.22■■□□□ 1.31
CHMP4A-211ENST00000609024 ZNF277Q9NRM2 450 aaPredicted RBP23.22■■□□□ 1.31
CHMP4A-211ENST00000609024 NIP7Q9Y221 180 aaKnown RBP eCLIP23.22■■□□□ 1.31
CHMP4A-211ENST00000609024 USP16Q9Y5T5 823 aa23.22■■□□□ 1.31
CHMP4A-211ENST00000609024 SIPA1L3O60292 1781 aaPredicted RBP23.22■■□□□ 1.31
CHMP4A-211ENST00000609024 FAM177BA6PVY3 158 aa23.21■■□□□ 1.31
CHMP4A-211ENST00000609024 PER1O15534 1290 aaPredicted RBP23.21■■□□□ 1.31
CHMP4A-211ENST00000609024 KCNQ3O43525 872 aa23.21■■□□□ 1.31
CHMP4A-211ENST00000609024 SNRPA1P09661 255 aaKnown RBP23.21■■□□□ 1.31
CHMP4A-211ENST00000609024 ALDH1B1P30837 517 aa23.21■■□□□ 1.31
CHMP4A-211ENST00000609024 EPHX2P34913 555 aa23.21■■□□□ 1.31
CHMP4A-211ENST00000609024 VEGFBP49765 207 aa23.21■■□□□ 1.31
CHMP4A-211ENST00000609024 BCORQ6W2J9 1755 aa23.21■■□□□ 1.31
CHMP4A-211ENST00000609024 PRKAR2BP31323 418 aa23.2■■□□□ 1.3
CHMP4A-211ENST00000609024 CEMIPQ8WUJ3 1361 aa23.19■■□□□ 1.3
CHMP4A-211ENST00000609024 C7orf43Q8WVR3 580 aa23.19■■□□□ 1.3
CHMP4A-211ENST00000609024 JDP2Q8WYK2 163 aa23.19■■□□□ 1.3
CHMP4A-211ENST00000609024 NUDCQ9Y266 331 aa23.19■■□□□ 1.3
CHMP4A-211ENST00000609024 ZNF541Q9H0D2 1346 aa23.18■■□□□ 1.3
CHMP4A-211ENST00000609024 DEFB115Q30KQ5 88 aa23.18■■□□□ 1.3
CHMP4A-211ENST00000609024 ITGBL1O95965 494 aaPredicted RBP23.17■■□□□ 1.3
CHMP4A-211ENST00000609024 IARSP41252 1262 aaKnown RBP23.17■■□□□ 1.3
CHMP4A-211ENST00000609024 CNTROBQ8N137 903 aa23.17■■□□□ 1.3
CHMP4A-211ENST00000609024 ABT1Q9ULW3 272 aaKnown RBP23.17■■□□□ 1.3
CHMP4A-211ENST00000609024 COL3A1P02461 1466 aaPredicted RBP23.17■■□□□ 1.3
CHMP4A-211ENST00000609024 RNF123Q5XPI4 1314 aa23.16■■□□□ 1.3
CHMP4A-211ENST00000609024 LBX1P52954 281 aa23.16■■□□□ 1.3
CHMP4A-211ENST00000609024 SYNE4Q8N205 404 aa23.16■■□□□ 1.3
CHMP4A-211ENST00000609024 PHACTR3Q96KR7 559 aa23.16■■□□□ 1.3
CHMP4A-211ENST00000609024 RGL2O15211 777 aa23.15■■□□□ 1.3
CHMP4A-211ENST00000609024 LMOD1P29536 600 aaPredicted RBP23.15■■□□□ 1.3
CHMP4A-211ENST00000609024 EIF6P56537 245 aaKnown RBP23.15■■□□□ 1.3
CHMP4A-211ENST00000609024 MAP2K1Q02750 393 aaPredicted RBP23.15■■□□□ 1.3
CHMP4A-211ENST00000609024 MAP1SQ66K74 1059 aaPredicted RBP23.15■■□□□ 1.3
CHMP4A-211ENST00000609024 GPC2Q8N158 579 aa23.15■■□□□ 1.3
CHMP4A-211ENST00000609024 PRAMEF22A3QJZ6 481 aa23.14■■□□□ 1.29
CHMP4A-211ENST00000609024 KLRG2A4D1S0 409 aaPredicted RBP23.14■■□□□ 1.29
CHMP4A-211ENST00000609024 WBP1LQ9NX94 342 aa23.14■■□□□ 1.29
CHMP4A-211ENST00000609024 NPC1L1Q9UHC9 1359 aa23.14■■□□□ 1.29
CHMP4A-211ENST00000609024 OLFM4Q6UX06 510 aa23.13■■□□□ 1.29
CHMP4A-211ENST00000609024 PAXIP1Q6ZW49 1069 aaPredicted RBP23.13■■□□□ 1.29
CHMP4A-211ENST00000609024 MCM10Q7L590 875 aa23.13■■□□□ 1.29
CHMP4A-211ENST00000609024 BEGAINQ9BUH8 593 aa23.13■■□□□ 1.29
CHMP4A-211ENST00000609024 NYXQ9GZU5 481 aa23.13■■□□□ 1.29
CHMP4A-211ENST00000609024 RSPH6AQ9H0K4 717 aa23.13■■□□□ 1.29
CHMP4A-211ENST00000609024 GJA3Q9Y6H8 435 aa23.13■■□□□ 1.29
CHMP4A-211ENST00000609024 FZD9O00144 591 aa23.12■■□□□ 1.29
CHMP4A-211ENST00000609024 U2AF1L5P0DN76 240 aaPredicted RBP23.12■■□□□ 1.29
CHMP4A-211ENST00000609024 U2AF1Q01081 240 aaKnown RBP eCLIP23.12■■□□□ 1.29
CHMP4A-211ENST00000609024 WDR33Q9C0J8 1336 aaKnown RBP23.11■■□□□ 1.29
CHMP4A-211ENST00000609024 RASSF10A6NK89 507 aa23.11■■□□□ 1.29
CHMP4A-211ENST00000609024 CC2D2BQ6DHV5 1058 aa23.11■■□□□ 1.29
CHMP4A-211ENST00000609024 RPGRQ92834 1020 aaKnown RBP23.11■■□□□ 1.29
CHMP4A-211ENST00000609024 PSMD1Q99460 953 aa23.1■■□□□ 1.29
CHMP4A-211ENST00000609024 TMX4Q9H1E5 349 aaPredicted RBP23.1■■□□□ 1.29
CHMP4A-211ENST00000609024 NBPF26B4DH59 902 aa23.09■■□□□ 1.29
CHMP4A-211ENST00000609024 NEFMP07197 916 aa23.09■■□□□ 1.29
CHMP4A-211ENST00000609024 NBPF10Q6P3W6 841 aaKnown RBP23.09■■□□□ 1.29
CHMP4A-211ENST00000609024 NGEFQ8N5V2 710 aa23.09■■□□□ 1.29
CHMP4A-211ENST00000609024 NBPF15Q8N660 670 aa23.09■■□□□ 1.29
CHMP4A-211ENST00000609024 ECE1P42892 770 aa23.08■■□□□ 1.29
CHMP4A-211ENST00000609024 HLFQ16534 295 aa23.08■■□□□ 1.29
CHMP4A-211ENST00000609024 GRIPAP1Q4V328 841 aa23.08■■□□□ 1.29
CHMP4A-211ENST00000609024 GRM1Q13255 1194 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms