RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 FMNL2Q96PY5 1086 aa6.94□□□□□ -1.3
VRK3-226ENST00000602029 TEX13AQ9BXU3 409 aaPredicted RBP6.94□□□□□ -1.3
VRK3-226ENST00000602029 CREBZFQ9NS37 354 aa6.94□□□□□ -1.3
VRK3-226ENST00000602029 PDZRN3Q9UPQ7 1066 aa6.94□□□□□ -1.3
VRK3-226ENST00000602029 AFDNP55196 1824 aaKnown RBP6.94□□□□□ -1.3
VRK3-226ENST00000602029 TJP1Q07157 1748 aa6.93□□□□□ -1.3
VRK3-226ENST00000602029 DLEC1Q9Y238 1755 aa6.93□□□□□ -1.3
VRK3-226ENST00000602029 IQCA1LA6NCM1 817 aa6.93□□□□□ -1.3
VRK3-226ENST00000602029 ZNF316A6NFI3 1004 aaPredicted RBP6.93□□□□□ -1.3
VRK3-226ENST00000602029 BTBD11A6QL63 1104 aa6.93□□□□□ -1.3
VRK3-226ENST00000602029 NFKBIEO00221 500 aa6.93□□□□□ -1.3
VRK3-226ENST00000602029 DDNO94850 711 aaPredicted RBP6.93□□□□□ -1.3
VRK3-226ENST00000602029 A1BGP04217 495 aa6.93□□□□□ -1.3
VRK3-226ENST00000602029 NEFMP07197 916 aa6.93□□□□□ -1.3
VRK3-226ENST00000602029 SOGA3Q5TF21 947 aa6.93□□□□□ -1.3
VRK3-226ENST00000602029 PRR5LQ6MZQ0 368 aa6.93□□□□□ -1.3
VRK3-226ENST00000602029 CHADLQ6NUI6 762 aa6.93□□□□□ -1.3
VRK3-226ENST00000602029 PRPF40BQ6NWY9 871 aaKnown RBP6.93□□□□□ -1.3
VRK3-226ENST00000602029 ZNF790Q6PG37 636 aa6.93□□□□□ -1.3
VRK3-226ENST00000602029 VSIG10Q8N0Z9 540 aa6.93□□□□□ -1.3
VRK3-226ENST00000602029 ZNF496Q96IT1 587 aaPredicted RBP6.93□□□□□ -1.3
VRK3-226ENST00000602029 BRIP1Q9BX63 1249 aa6.93□□□□□ -1.3
VRK3-226ENST00000602029 BCL2L12Q9HB09 334 aa6.93□□□□□ -1.3
VRK3-226ENST00000602029 ZNF652Q9Y2D9 606 aa6.93□□□□□ -1.3
VRK3-226ENST00000602029 ZNF831Q5JPB2 1677 aa6.93□□□□□ -1.3
VRK3-226ENST00000602029 LTBP1Q14766 1721 aa6.93□□□□□ -1.3
VRK3-226ENST00000602029 THSD7BQ9C0I4 1608 aa6.92□□□□□ -1.3
VRK3-226ENST00000602029 CCDC93Q567U6 631 aa6.92□□□□□ -1.3
VRK3-226ENST00000602029 NGEFQ8N5V2 710 aa6.92□□□□□ -1.3
VRK3-226ENST00000602029 ABT1Q9ULW3 272 aaKnown RBP6.92□□□□□ -1.3
VRK3-226ENST00000602029 NUDCQ9Y266 331 aa6.92□□□□□ -1.3
VRK3-226ENST00000602029 HEG1Q9ULI3 1381 aa6.92□□□□□ -1.3
VRK3-226ENST00000602029 CACNA1SQ13698 1873 aa6.92□□□□□ -1.3
VRK3-226ENST00000602029 TCERG1O14776 1098 aaKnown RBP6.91□□□□□ -1.3
VRK3-226ENST00000602029 CENPBP07199 599 aaPredicted RBP6.91□□□□□ -1.3
VRK3-226ENST00000602029 U2AF1L5P0DN76 240 aaPredicted RBP6.91□□□□□ -1.3
VRK3-226ENST00000602029 PRKAR2BP31323 418 aa6.91□□□□□ -1.3
VRK3-226ENST00000602029 IL6STP40189 918 aaPredicted RBP6.91□□□□□ -1.3
VRK3-226ENST00000602029 EIF5P55010 431 aaKnown RBP6.91□□□□□ -1.3
VRK3-226ENST00000602029 U2AF1Q01081 240 aaKnown RBP eCLIP6.91□□□□□ -1.3
VRK3-226ENST00000602029 DIEXFQ68CQ4 756 aaKnown RBP6.91□□□□□ -1.3
VRK3-226ENST00000602029 STYK1Q6J9G0 422 aa6.91□□□□□ -1.3
VRK3-226ENST00000602029 JDP2Q8WYK2 163 aa6.91□□□□□ -1.3
VRK3-226ENST00000602029 MASTLQ96GX5 879 aa6.91□□□□□ -1.3
VRK3-226ENST00000602029 CFAP44Q96MT7 982 aa6.91□□□□□ -1.3
VRK3-226ENST00000602029 TMX4Q9H1E5 349 aaPredicted RBP6.91□□□□□ -1.3
VRK3-226ENST00000602029 ZNF277Q9NRM2 450 aaPredicted RBP6.91□□□□□ -1.3
VRK3-226ENST00000602029 NIP7Q9Y221 180 aaKnown RBP eCLIP6.91□□□□□ -1.3
VRK3-226ENST00000602029 GJA3Q9Y6H8 435 aa6.91□□□□□ -1.3
VRK3-226ENST00000602029 KIF7Q2M1P5 1343 aa6.91□□□□□ -1.3
VRK3-226ENST00000602029 FER1L6Q2WGJ9 1857 aa6.91□□□□□ -1.3
VRK3-226ENST00000602029 LMOD1P29536 600 aaPredicted RBP6.9□□□□□ -1.3
VRK3-226ENST00000602029 AMER1Q5JTC6 1135 aaPredicted RBP6.9□□□□□ -1.3
VRK3-226ENST00000602029 TPTE2Q6XPS3 522 aa6.9□□□□□ -1.3
VRK3-226ENST00000602029 LDHDQ86WU2 507 aa6.9□□□□□ -1.3
VRK3-226ENST00000602029 RPGRQ92834 1020 aaKnown RBP6.9□□□□□ -1.3
VRK3-226ENST00000602029 BEGAINQ9BUH8 593 aa6.9□□□□□ -1.3
VRK3-226ENST00000602029 PASKQ96RG2 1323 aa6.9□□□□□ -1.3
VRK3-226ENST00000602029 MRC1P22897 1456 aa6.9□□□□□ -1.31
VRK3-226ENST00000602029 ADAMTSL1Q8N6G6 1762 aa6.9□□□□□ -1.31
VRK3-226ENST00000602029 SCN11AQ9UI33 1791 aa6.9□□□□□ -1.31
VRK3-226ENST00000602029 TMEM88BA6NKF7 163 aa6.89□□□□□ -1.31
VRK3-226ENST00000602029 KCNQ3O43525 872 aa6.89□□□□□ -1.31
VRK3-226ENST00000602029 CAMTA2O94983 1202 aa6.89□□□□□ -1.31
VRK3-226ENST00000602029 SNRPA1P09661 255 aaKnown RBP6.89□□□□□ -1.31
VRK3-226ENST00000602029 SRGNP10124 158 aa6.89□□□□□ -1.31
VRK3-226ENST00000602029 NPR1P16066 1061 aa6.89□□□□□ -1.31
VRK3-226ENST00000602029 EIF6P56537 245 aaKnown RBP6.89□□□□□ -1.31
VRK3-226ENST00000602029 KIF6Q6ZMV9 814 aa6.89□□□□□ -1.31
VRK3-226ENST00000602029 MCM10Q7L590 875 aa6.89□□□□□ -1.31
VRK3-226ENST00000602029 IL17REQ8NFR9 667 aa6.89□□□□□ -1.31
VRK3-226ENST00000602029 HACL1Q9UJ83 578 aa6.89□□□□□ -1.31
VRK3-226ENST00000602029 TSKSQ9UJT2 592 aa6.89□□□□□ -1.31
VRK3-226ENST00000602029 RNF123Q5XPI4 1314 aa6.89□□□□□ -1.31
VRK3-226ENST00000602029 TRPM7Q96QT4 1865 aa6.88□□□□□ -1.31
VRK3-226ENST00000602029 SCN4AP35499 1836 aa6.88□□□□□ -1.31
VRK3-226ENST00000602029 ZNF541Q9H0D2 1346 aa6.88□□□□□ -1.31
VRK3-226ENST00000602029 ALDH1B1P30837 517 aa6.88□□□□□ -1.31
VRK3-226ENST00000602029 EPHX2P34913 555 aa6.88□□□□□ -1.31
VRK3-226ENST00000602029 FKBP4Q02790 459 aaKnown RBP eCLIP6.88□□□□□ -1.31
VRK3-226ENST00000602029 DCTN1Q14203 1278 aa6.88□□□□□ -1.31
VRK3-226ENST00000602029 MAP1SQ66K74 1059 aaPredicted RBP6.88□□□□□ -1.31
VRK3-226ENST00000602029 RTKN2Q8IZC4 609 aa6.88□□□□□ -1.31
VRK3-226ENST00000602029 MCOLN1Q9GZU1 580 aa6.88□□□□□ -1.31
VRK3-226ENST00000602029 TAF1DQ9H5J8 278 aaPredicted RBP6.88□□□□□ -1.31
VRK3-226ENST00000602029 RRP7AQ9Y3A4 280 aaKnown RBP6.88□□□□□ -1.31
VRK3-226ENST00000602029 USP16Q9Y5T5 823 aa6.88□□□□□ -1.31
VRK3-226ENST00000602029 ADAMTS7Q9UKP4 1686 aa6.87□□□□□ -1.31
VRK3-226ENST00000602029 LTBP3Q9NS15 1303 aa6.87□□□□□ -1.31
VRK3-226ENST00000602029 PRAMEF22A3QJZ6 481 aa6.87□□□□□ -1.31
VRK3-226ENST00000602029 IARSP41252 1262 aaKnown RBP6.87□□□□□ -1.31
VRK3-226ENST00000602029 OLFM4Q6UX06 510 aa6.87□□□□□ -1.31
VRK3-226ENST00000602029 PNMA8AQ86V59 439 aaPredicted RBP6.87□□□□□ -1.31
VRK3-226ENST00000602029 SYNE4Q8N205 404 aa6.87□□□□□ -1.31
VRK3-226ENST00000602029 LARGE2Q8N3Y3 721 aa6.87□□□□□ -1.31
VRK3-226ENST00000602029 PHACTR3Q96KR7 559 aa6.87□□□□□ -1.31
VRK3-226ENST00000602029 NYXQ9GZU5 481 aa6.87□□□□□ -1.31
VRK3-226ENST00000602029 MIS18AQ9NYP9 233 aa6.87□□□□□ -1.31
VRK3-226ENST00000602029 ANKRD31Q8N7Z5 1873 aa6.87□□□□□ -1.31
VRK3-226ENST00000602029 SZT2Q5T011 3432 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms