RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 PRELPP51888 382 aa16.6■□□□□ 0.25
UPF1-208ENST00000600012 PRR5LQ6MZQ0 368 aa16.6■□□□□ 0.25
UPF1-208ENST00000600012 PHACTR3Q96KR7 559 aa16.6■□□□□ 0.25
UPF1-208ENST00000600012 RSPH6AQ9H0K4 717 aa16.6■□□□□ 0.25
UPF1-208ENST00000600012 CACNA1SQ13698 1873 aa16.59■□□□□ 0.25
UPF1-208ENST00000600012 A1BGP04217 495 aa16.59■□□□□ 0.25
UPF1-208ENST00000600012 CENPBP07199 599 aaPredicted RBP16.59■□□□□ 0.25
UPF1-208ENST00000600012 ZNF622Q969S3 477 aaKnown RBP eCLIP16.59■□□□□ 0.25
UPF1-208ENST00000600012 RUNDC1Q96C34 613 aa16.59■□□□□ 0.25
UPF1-208ENST00000600012 APAF1O14727 1248 aa16.58■□□□□ 0.24
UPF1-208ENST00000600012 CAMTA2O94983 1202 aa16.58■□□□□ 0.24
UPF1-208ENST00000600012 VEGFAP15692 232 aaPredicted RBP16.58■□□□□ 0.24
UPF1-208ENST00000600012 KLRG1Q96E93 195 aa16.58■□□□□ 0.24
UPF1-208ENST00000600012 SETDB2Q96T68 719 aa16.58■□□□□ 0.24
UPF1-208ENST00000600012 ARFGEF2Q9Y6D5 1785 aa16.58■□□□□ 0.24
UPF1-208ENST00000600012 NPHP1O15259 732 aa16.57■□□□□ 0.24
UPF1-208ENST00000600012 KCNQ3O43525 872 aa16.57■□□□□ 0.24
UPF1-208ENST00000600012 HTRA3P83110 453 aa16.57■□□□□ 0.24
UPF1-208ENST00000600012 DZIP3Q86Y13 1208 aaKnown RBP16.57■□□□□ 0.24
UPF1-208ENST00000600012 CNBD1Q8NA66 436 aa16.57■□□□□ 0.24
UPF1-208ENST00000600012 PLEKHF1Q96S99 279 aa16.57■□□□□ 0.24
UPF1-208ENST00000600012 C21orf2O43822 256 aa16.56■□□□□ 0.24
UPF1-208ENST00000600012 ST5P78524 1137 aa16.56■□□□□ 0.24
UPF1-208ENST00000600012 RTF1Q92541 710 aaKnown RBP16.56■□□□□ 0.24
UPF1-208ENST00000600012 SLX4Q8IY92 1834 aa16.56■□□□□ 0.24
UPF1-208ENST00000600012 LTBP3Q9NS15 1303 aa16.55■□□□□ 0.24
UPF1-208ENST00000600012 MAPK8IP3Q9UPT6 1336 aa16.55■□□□□ 0.24
UPF1-208ENST00000600012 DPY19L2Q6NUT2 758 aa16.55■□□□□ 0.24
UPF1-208ENST00000600012 CCDC24Q8N4L8 307 aa16.55■□□□□ 0.24
UPF1-208ENST00000600012 JMYQ8N9B5 988 aa16.55■□□□□ 0.24
UPF1-208ENST00000600012 RRP7AQ9Y3A4 280 aaKnown RBP16.55■□□□□ 0.24
UPF1-208ENST00000600012 USP16Q9Y5T5 823 aa16.55■□□□□ 0.24
UPF1-208ENST00000600012 SNRPA1P09661 255 aaKnown RBP16.54■□□□□ 0.24
UPF1-208ENST00000600012 STYK1Q6J9G0 422 aa16.54■□□□□ 0.24
UPF1-208ENST00000600012 CLEC4GQ6UXB4 293 aa16.54■□□□□ 0.24
UPF1-208ENST00000600012 CNKSR1Q969H4 720 aa16.54■□□□□ 0.24
UPF1-208ENST00000600012 ZNF219Q9P2Y4 722 aaPredicted RBP16.54■□□□□ 0.24
UPF1-208ENST00000600012 SRGNP10124 158 aa16.53■□□□□ 0.24
UPF1-208ENST00000600012 ERFEQ4G0M1 354 aa16.53■□□□□ 0.24
UPF1-208ENST00000600012 SOGA3Q5TF21 947 aa16.53■□□□□ 0.24
UPF1-208ENST00000600012 TAOK3Q9H2K8 898 aa16.53■□□□□ 0.24
UPF1-208ENST00000600012 PNNQ9H307 717 aaKnown RBP16.53■□□□□ 0.24
UPF1-208ENST00000600012 ZNF652Q9Y2D9 606 aa16.53■□□□□ 0.24
UPF1-208ENST00000600012 LAMB4A4D0S4 1761 aa16.52■□□□□ 0.24
UPF1-208ENST00000600012 HTATSF1O43719 755 aaKnown RBP16.52■□□□□ 0.24
UPF1-208ENST00000600012 PIP4K2AP48426 406 aaPredicted RBP16.52■□□□□ 0.24
UPF1-208ENST00000600012 MCM10Q7L590 875 aa16.52■□□□□ 0.24
UPF1-208ENST00000600012 MASTLQ96GX5 879 aa16.52■□□□□ 0.24
UPF1-208ENST00000600012 PRAMEF22A3QJZ6 481 aa16.51■□□□□ 0.23
UPF1-208ENST00000600012 RGL2O15211 777 aa16.51■□□□□ 0.23
UPF1-208ENST00000600012 NEUROD2Q15784 382 aa16.51■□□□□ 0.23
UPF1-208ENST00000600012 PRPF40BQ6NWY9 871 aaKnown RBP16.51■□□□□ 0.23
UPF1-208ENST00000600012 NBPF5PQ86XG9 351 aaPredicted RBP16.51■□□□□ 0.23
UPF1-208ENST00000600012 POTECB2RU33 542 aa16.5■□□□□ 0.23
UPF1-208ENST00000600012 NEFMP07197 916 aa16.5■□□□□ 0.23
UPF1-208ENST00000600012 TMPOP42166 694 aaKnown RBP16.5■□□□□ 0.23
UPF1-208ENST00000600012 DCTN1Q14203 1278 aa16.49■□□□□ 0.23
UPF1-208ENST00000600012 ZNF521Q96K83 1311 aa16.48■□□□□ 0.23
UPF1-208ENST00000600012 KDM3BQ7LBC6 1761 aa16.48■□□□□ 0.23
UPF1-208ENST00000600012 NBPF26B4DH59 902 aa16.47■□□□□ 0.23
UPF1-208ENST00000600012 NPR1P16066 1061 aa16.47■□□□□ 0.23
UPF1-208ENST00000600012 TAF7Q15545 349 aaPredicted RBP16.47■□□□□ 0.23
UPF1-208ENST00000600012 NFE2L2Q16236 605 aa16.47■□□□□ 0.23
UPF1-208ENST00000600012 CCDC93Q567U6 631 aa16.47■□□□□ 0.23
UPF1-208ENST00000600012 NBPF10Q6P3W6 841 aaKnown RBP16.47■□□□□ 0.23
UPF1-208ENST00000600012 TPTE2Q6XPS3 522 aa16.47■□□□□ 0.23
UPF1-208ENST00000600012 NBPF15Q8N660 670 aa16.47■□□□□ 0.23
UPF1-208ENST00000600012 NIP7Q9Y221 180 aaKnown RBP eCLIP16.47■□□□□ 0.23
UPF1-208ENST00000600012 SCN4AP35499 1836 aa16.47■□□□□ 0.23
UPF1-208ENST00000600012 KLRG2A4D1S0 409 aaPredicted RBP16.46■□□□□ 0.23
UPF1-208ENST00000600012 NGEFQ8N5V2 710 aa16.46■□□□□ 0.23
UPF1-208ENST00000600012 C7orf43Q8WVR3 580 aa16.46■□□□□ 0.23
UPF1-208ENST00000600012 DDNO94850 711 aaPredicted RBP16.45■□□□□ 0.22
UPF1-208ENST00000600012 RIPK4P57078 832 aa16.45■□□□□ 0.22
UPF1-208ENST00000600012 WWC1Q8IX03 1113 aa16.45■□□□□ 0.22
UPF1-208ENST00000600012 CDCA7LQ96GN5 454 aa16.45■□□□□ 0.22
UPF1-208ENST00000600012 NUP98P52948 1817 aa16.45■□□□□ 0.22
UPF1-208ENST00000600012 CCDC27Q2M243 656 aa16.44■□□□□ 0.22
UPF1-208ENST00000600012 CHADLQ6NUI6 762 aa16.44■□□□□ 0.22
UPF1-208ENST00000600012 TRIM35Q9UPQ4 493 aa16.44■□□□□ 0.22
UPF1-208ENST00000600012 IQCA1LA6NCM1 817 aa16.43■□□□□ 0.22
UPF1-208ENST00000600012 FKBP4Q02790 459 aaKnown RBP eCLIP16.43■□□□□ 0.22
UPF1-208ENST00000600012 COL13A1Q5TAT6 717 aaPredicted RBP16.43■□□□□ 0.22
UPF1-208ENST00000600012 FAM177BA6PVY3 158 aa16.42■□□□□ 0.22
UPF1-208ENST00000600012 GTF2E1P29083 439 aaPredicted RBP16.42■□□□□ 0.22
UPF1-208ENST00000600012 GOLGA2Q08379 1002 aa16.42■□□□□ 0.22
UPF1-208ENST00000600012 HLFQ16534 295 aa16.42■□□□□ 0.22
UPF1-208ENST00000600012 NCBP3Q53F19 620 aaKnown RBP16.42■□□□□ 0.22
UPF1-208ENST00000600012 RTKN2Q8IZC4 609 aa16.42■□□□□ 0.22
UPF1-208ENST00000600012 L3MBTL3Q96JM7 780 aaPredicted RBP16.42■□□□□ 0.22
UPF1-208ENST00000600012 MIS18AQ9NYP9 233 aa16.42■□□□□ 0.22
UPF1-208ENST00000600012 ALDH1B1P30837 517 aa16.41■□□□□ 0.22
UPF1-208ENST00000600012 NYXQ9GZU5 481 aa16.41■□□□□ 0.22
UPF1-208ENST00000600012 SPINK5Q9NQ38 1064 aaPredicted RBP16.41■□□□□ 0.22
UPF1-208ENST00000600012 CREBZFQ9NS37 354 aa16.41■□□□□ 0.22
UPF1-208ENST00000600012 ERVV-1B6SEH8 477 aa16.4■□□□□ 0.22
UPF1-208ENST00000600012 POTEIP0CG38 1075 aa16.4■□□□□ 0.22
UPF1-208ENST00000600012 POTEJP0CG39 1038 aa16.4■□□□□ 0.22
UPF1-208ENST00000600012 HSPA1AP0DMV8 641 aaKnown RBP16.4■□□□□ 0.22
UPF1-208ENST00000600012 HSPA1BP0DMV9 641 aaKnown RBP16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms