RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 EPHA10Q5JZY3 1008 aa17.77■□□□□ 0.44
VRK3-217ENST00000599538 PI4K2BQ8TCG2 481 aa17.77■□□□□ 0.44
VRK3-217ENST00000599538 CASC1Q6TDU7 716 aa17.77■□□□□ 0.43
VRK3-217ENST00000599538 ERC2O15083 957 aa17.76■□□□□ 0.43
VRK3-217ENST00000599538 NEXNQ0ZGT2 675 aa17.76■□□□□ 0.43
VRK3-217ENST00000599538 KCPQ6ZWJ8 1503 aa17.76■□□□□ 0.43
VRK3-217ENST00000599538 ATP5J2-PTCD1G3V325 749 aa17.75■□□□□ 0.43
VRK3-217ENST00000599538 A1BGP04217 495 aa17.75■□□□□ 0.43
VRK3-217ENST00000599538 OS9Q13438 667 aaPredicted RBP17.75■□□□□ 0.43
VRK3-217ENST00000599538 IL25Q9H293 177 aa17.75■□□□□ 0.43
VRK3-217ENST00000599538 ROBO1Q9Y6N7 1651 aa17.75■□□□□ 0.43
VRK3-217ENST00000599538 CHMLP26374 656 aa17.75■□□□□ 0.43
VRK3-217ENST00000599538 UBR2Q8IWV8 1755 aa17.75■□□□□ 0.43
VRK3-217ENST00000599538 KLHDC4Q8TBB5 520 aa17.75■□□□□ 0.43
VRK3-217ENST00000599538 TOGARAM1Q9Y4F4 1720 aa17.75■□□□□ 0.43
VRK3-217ENST00000599538 LAMB4A4D0S4 1761 aa17.74■□□□□ 0.43
VRK3-217ENST00000599538 ESYT1Q9BSJ8 1104 aa17.74■□□□□ 0.43
VRK3-217ENST00000599538 AOX1Q06278 1338 aa17.74■□□□□ 0.43
VRK3-217ENST00000599538 TTLL7Q6ZT98 887 aa17.74■□□□□ 0.43
VRK3-217ENST00000599538 ARFGEF2Q9Y6D5 1785 aa17.73■□□□□ 0.43
VRK3-217ENST00000599538 HSP90AB4PQ58FF6 505 aa17.73■□□□□ 0.43
VRK3-217ENST00000599538 SASH1O94885 1247 aa17.72■□□□□ 0.43
VRK3-217ENST00000599538 REC8O95072 547 aa17.72■□□□□ 0.43
VRK3-217ENST00000599538 FOXD4L1Q9NU39 408 aa17.72■□□□□ 0.43
VRK3-217ENST00000599538 PAPPAQ13219 1627 aa17.72■□□□□ 0.43
VRK3-217ENST00000599538 DDIT3P35638 169 aa17.72■□□□□ 0.43
VRK3-217ENST00000599538 SIL1Q9H173 461 aa17.72■□□□□ 0.43
VRK3-217ENST00000599538 UBE3BQ7Z3V4 1068 aa17.71■□□□□ 0.43
VRK3-217ENST00000599538 PLBD2Q8NHP8 589 aa17.71■□□□□ 0.43
VRK3-217ENST00000599538 HDAC5Q9UQL6 1122 aa17.71■□□□□ 0.43
VRK3-217ENST00000599538 AFDNP55196 1824 aaKnown RBP17.71■□□□□ 0.43
VRK3-217ENST00000599538 K7ELQ4 463 aaPredicted RBP17.71■□□□□ 0.42
VRK3-217ENST00000599538 ASAP1Q9ULH1 1129 aa17.71■□□□□ 0.42
VRK3-217ENST00000599538 TNS2Q63HR2 1409 aa17.71■□□□□ 0.42
VRK3-217ENST00000599538 CLASRPQ8N2M8 674 aaKnown RBP17.7■□□□□ 0.42
VRK3-217ENST00000599538 CHMP5Q9NZZ3 219 aa17.7■□□□□ 0.42
VRK3-217ENST00000599538 EIF5BO60841 1220 aaKnown RBP17.69■□□□□ 0.42
VRK3-217ENST00000599538 RABEP1Q15276 862 aa17.69■□□□□ 0.42
VRK3-217ENST00000599538 PIGBQ92521 554 aa17.69■□□□□ 0.42
VRK3-217ENST00000599538 COL16A1Q07092 1604 aaPredicted RBP17.69■□□□□ 0.42
VRK3-217ENST00000599538 A0A087WZG4 1122 aa17.69■□□□□ 0.42
VRK3-217ENST00000599538 TMOD3Q9NYL9 352 aa17.69■□□□□ 0.42
VRK3-217ENST00000599538 USP42Q9H9J4 1324 aaKnown RBP17.68■□□□□ 0.42
VRK3-217ENST00000599538 AK9Q5TCS8 1911 aa17.68■□□□□ 0.42
VRK3-217ENST00000599538 CASP7P55210 303 aa17.68■□□□□ 0.42
VRK3-217ENST00000599538 EAF2Q96CJ1 260 aaPredicted RBP17.68■□□□□ 0.42
VRK3-217ENST00000599538 ZBTB3Q9H5J0 574 aa17.68■□□□□ 0.42
VRK3-217ENST00000599538 PALD1Q9ULE6 856 aa17.68■□□□□ 0.42
VRK3-217ENST00000599538 KAT6BQ8WYB5 2073 aa17.68■□□□□ 0.42
VRK3-217ENST00000599538 AACSQ86V21 672 aa17.68■□□□□ 0.42
VRK3-217ENST00000599538 ANO2Q9NQ90 1003 aa17.68■□□□□ 0.42
VRK3-217ENST00000599538 TLR7Q9NYK1 1049 aaKnown RBP17.68■□□□□ 0.42
VRK3-217ENST00000599538 ERBB4Q15303 1308 aa17.67■□□□□ 0.42
VRK3-217ENST00000599538 DISP2A7MBM2 1401 aa17.67■□□□□ 0.42
VRK3-217ENST00000599538 G3BP1Q13283 466 aaKnown RBP eCLIP17.67■□□□□ 0.42
VRK3-217ENST00000599538 CCDC8Q9H0W5 538 aaPredicted RBP17.67■□□□□ 0.42
VRK3-217ENST00000599538 AHDC1Q5TGY3 1603 aaPredicted RBP17.67■□□□□ 0.42
VRK3-217ENST00000599538 COL14A1Q05707 1796 aaKnown RBP17.67■□□□□ 0.42
VRK3-217ENST00000599538 RFX5P48382 616 aaPredicted RBP17.66■□□□□ 0.42
VRK3-217ENST00000599538 ERC1Q8IUD2 1116 aa17.66■□□□□ 0.42
VRK3-217ENST00000599538 LTBP4Q8N2S1 1624 aa17.66■□□□□ 0.42
VRK3-217ENST00000599538 TTC41PQ6P2S7 1318 aa17.66■□□□□ 0.42
VRK3-217ENST00000599538 IFIT2P09913 472 aaKnown RBP17.66■□□□□ 0.42
VRK3-217ENST00000599538 ATG3Q9NT62 314 aa17.66■□□□□ 0.42
VRK3-217ENST00000599538 DNAJC10Q8IXB1 793 aa17.65■□□□□ 0.42
VRK3-217ENST00000599538 ECHDC1Q9NTX5 307 aa17.65■□□□□ 0.42
VRK3-217ENST00000599538 NUP188Q5SRE5 1749 aa17.65■□□□□ 0.42
VRK3-217ENST00000599538 GLRX3O76003 335 aaKnown RBP17.65■□□□□ 0.42
VRK3-217ENST00000599538 ADAMTS2O95450 1211 aa17.65■□□□□ 0.42
VRK3-217ENST00000599538 PTPN12Q05209 780 aaKnown RBP17.65■□□□□ 0.42
VRK3-217ENST00000599538 RABL6Q3YEC7 729 aaPredicted RBP17.65■□□□□ 0.42
VRK3-217ENST00000599538 ITGB4P16144 1822 aa17.64■□□□□ 0.41
VRK3-217ENST00000599538 HSP90AA1P07900 732 aaKnown RBP17.64■□□□□ 0.41
VRK3-217ENST00000599538 CNTROBQ8N137 903 aa17.64■□□□□ 0.41
VRK3-217ENST00000599538 ZNF330Q9Y3S2 320 aaPredicted RBP17.64■□□□□ 0.41
VRK3-217ENST00000599538 COL22A1Q8NFW1 1626 aaPredicted RBP17.64■□□□□ 0.41
VRK3-217ENST00000599538 H7C1W4 665 aa17.63■□□□□ 0.41
VRK3-217ENST00000599538 SLC4A9Q96Q91 983 aa17.63■□□□□ 0.41
VRK3-217ENST00000599538 SGSM2O43147 1006 aa17.62■□□□□ 0.41
VRK3-217ENST00000599538 FOXO4P98177 505 aa17.62■□□□□ 0.41
VRK3-217ENST00000599538 LMBR1LQ6UX01 489 aa17.62■□□□□ 0.41
VRK3-217ENST00000599538 CWC27Q6UX04 472 aaKnown RBP17.62■□□□□ 0.41
VRK3-217ENST00000599538 COPRSQ9NQ92 184 aa17.62■□□□□ 0.41
VRK3-217ENST00000599538 TJP1Q07157 1748 aa17.61■□□□□ 0.41
VRK3-217ENST00000599538 MCM4P33991 863 aa17.61■□□□□ 0.41
VRK3-217ENST00000599538 CWC25Q9NXE8 425 aaPredicted RBP17.61■□□□□ 0.41
VRK3-217ENST00000599538 COL15A1P39059 1388 aa17.61■□□□□ 0.41
VRK3-217ENST00000599538 NEK4P51957 841 aa17.6■□□□□ 0.41
VRK3-217ENST00000599538 TFCP2Q12800 502 aa17.6■□□□□ 0.41
VRK3-217ENST00000599538 GSE1Q14687 1217 aa17.6■□□□□ 0.41
VRK3-217ENST00000599538 EXOC5O00471 708 aa17.6■□□□□ 0.41
VRK3-217ENST00000599538 SYTL4Q96C24 671 aaPredicted RBP17.6■□□□□ 0.41
VRK3-217ENST00000599538 BOLA2Q9H3K6 86 aa17.6■□□□□ 0.41
VRK3-217ENST00000599538 BCL9O00512 1426 aa17.6■□□□□ 0.41
VRK3-217ENST00000599538 ST18O60284 1047 aa17.59■□□□□ 0.41
VRK3-217ENST00000599538 TNPO1Q92973 898 aaKnown RBP17.59■□□□□ 0.41
VRK3-217ENST00000599538 GPATCH3Q96I76 525 aa17.59■□□□□ 0.41
VRK3-217ENST00000599538 CHMP3Q9Y3E7 222 aa17.59■□□□□ 0.41
VRK3-217ENST00000599538 LSG1Q9H089 658 aaKnown RBP17.59■□□□□ 0.41
VRK3-217ENST00000599538 NUTM2BA6NNL0 878 aaPredicted RBP17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms