RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 ITGAEP38570 1179 aa5.8□□□□□ -1.48
LIG3-211ENST00000588713 CTU1Q7Z7A3 348 aaKnown RBP5.8□□□□□ -1.48
LIG3-211ENST00000588713 MICALL2Q8IY33 904 aa5.8□□□□□ -1.48
LIG3-211ENST00000588713 NLGN1Q8N2Q7 840 aa5.8□□□□□ -1.48
LIG3-211ENST00000588713 LINC00116Q8NCU8 138 aa5.8□□□□□ -1.48
LIG3-211ENST00000588713 ZFP91Q96JP5 570 aaPredicted RBP5.8□□□□□ -1.48
LIG3-211ENST00000588713 TSHZ2Q9NRE2 1034 aa5.8□□□□□ -1.48
LIG3-211ENST00000588713 CCDC24Q8N4L8 307 aa5.79□□□□□ -1.48
LIG3-211ENST00000588713 RNF25Q96BH1 459 aaPredicted RBP5.79□□□□□ -1.48
LIG3-211ENST00000588713 FAM122AQ96E09 287 aa5.79□□□□□ -1.48
LIG3-211ENST00000588713 CDK19Q9BWU1 502 aa5.79□□□□□ -1.48
LIG3-211ENST00000588713 TLL2Q9Y6L7 1015 aa5.79□□□□□ -1.48
LIG3-211ENST00000588713 TAF1LQ8IZX4 1826 aa5.78□□□□□ -1.48
LIG3-211ENST00000588713 PLEKHG3A1L390 1219 aa5.78□□□□□ -1.48
LIG3-211ENST00000588713 EPHX2P34913 555 aa5.78□□□□□ -1.48
LIG3-211ENST00000588713 PLA2G5P39877 138 aa5.78□□□□□ -1.48
LIG3-211ENST00000588713 MPRIPQ6WCQ1 1025 aa5.78□□□□□ -1.48
LIG3-211ENST00000588713 KCNH5Q8NCM2 988 aa5.78□□□□□ -1.48
LIG3-211ENST00000588713 ZIC5Q96T25 663 aa5.78□□□□□ -1.48
LIG3-211ENST00000588713 HACL1Q9UJ83 578 aa5.78□□□□□ -1.48
LIG3-211ENST00000588713 ROCK1Q13464 1354 aa5.78□□□□□ -1.48
LIG3-211ENST00000588713 TRAF5O00463 557 aa5.77□□□□□ -1.49
LIG3-211ENST00000588713 TRAPPC3LQ5T215 181 aa5.77□□□□□ -1.49
LIG3-211ENST00000588713 ANKRD24Q8TF21 1146 aa5.77□□□□□ -1.49
LIG3-211ENST00000588713 SNX27Q96L92 541 aa5.77□□□□□ -1.49
LIG3-211ENST00000588713 MKI67P46013 3256 aaKnown RBP5.77□□□□□ -1.49
LIG3-211ENST00000588713 RNF123Q5XPI4 1314 aa5.76□□□□□ -1.49
LIG3-211ENST00000588713 TRPA1O75762 1119 aa5.76□□□□□ -1.49
LIG3-211ENST00000588713 GYS1P13807 737 aa5.76□□□□□ -1.49
LIG3-211ENST00000588713 AKAP4Q5JQC9 854 aa5.76□□□□□ -1.49
LIG3-211ENST00000588713 VARS2Q5ST30 1063 aaKnown RBP5.76□□□□□ -1.49
LIG3-211ENST00000588713 CST9Q5W186 159 aa5.76□□□□□ -1.49
LIG3-211ENST00000588713 TMEM92Q6UXU6 159 aa5.76□□□□□ -1.49
LIG3-211ENST00000588713 LTV1Q96GA3 475 aaPredicted RBP5.76□□□□□ -1.49
LIG3-211ENST00000588713 MS4A4AQ96JQ5 239 aa5.76□□□□□ -1.49
LIG3-211ENST00000588713 RBM27Q9P2N5 1060 aaKnown RBP5.76□□□□□ -1.49
LIG3-211ENST00000588713 CCDC88AQ3V6T2 1871 aa5.75□□□□□ -1.49
LIG3-211ENST00000588713 H0YGN5 161 aa5.75□□□□□ -1.49
LIG3-211ENST00000588713 RFC4P35249 363 aa5.75□□□□□ -1.49
LIG3-211ENST00000588713 DDR1Q08345 913 aa5.75□□□□□ -1.49
LIG3-211ENST00000588713 BICDL1Q6ZP65 573 aa5.75□□□□□ -1.49
LIG3-211ENST00000588713 PNMA8AQ86V59 439 aaPredicted RBP5.75□□□□□ -1.49
LIG3-211ENST00000588713 TTLL6Q8N841 843 aa5.75□□□□□ -1.49
LIG3-211ENST00000588713 ZCRB1Q8TBF4 217 aaKnown RBP5.75□□□□□ -1.49
LIG3-211ENST00000588713 SMARCC1Q92922 1105 aaPredicted RBP5.75□□□□□ -1.49
LIG3-211ENST00000588713 ZNF408Q9H9D4 720 aa5.75□□□□□ -1.49
LIG3-211ENST00000588713 HDAC9Q9UKV0 1011 aa5.75□□□□□ -1.49
LIG3-211ENST00000588713 TAOK2Q9UL54 1235 aa5.75□□□□□ -1.49
LIG3-211ENST00000588713 RTCBQ9Y3I0 505 aaKnown RBP5.75□□□□□ -1.49
LIG3-211ENST00000588713 ZNF541Q9H0D2 1346 aa5.74□□□□□ -1.49
LIG3-211ENST00000588713 TRIOBPQ9H2D6 2365 aa5.74□□□□□ -1.49
LIG3-211ENST00000588713 LOC102724428A0A0B4J2F2 783 aa5.74□□□□□ -1.49
LIG3-211ENST00000588713 C21orf2O43822 256 aa5.74□□□□□ -1.49
LIG3-211ENST00000588713 CELF2O95319 508 aaKnown RBP5.74□□□□□ -1.49
LIG3-211ENST00000588713 ATP6V1AP38606 617 aa5.74□□□□□ -1.49
LIG3-211ENST00000588713 SIK1P57059 783 aa5.74□□□□□ -1.49
LIG3-211ENST00000588713 NOGQ13253 232 aa5.74□□□□□ -1.49
LIG3-211ENST00000588713 ITPK1Q13572 414 aa5.74□□□□□ -1.49
LIG3-211ENST00000588713 SAPCD2Q86UD0 394 aa5.74□□□□□ -1.49
LIG3-211ENST00000588713 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.74□□□□□ -1.49
LIG3-211ENST00000588713 SYNE4Q8N205 404 aa5.74□□□□□ -1.49
LIG3-211ENST00000588713 ARHGEF1Q92888 912 aaKnown RBP5.74□□□□□ -1.49
LIG3-211ENST00000588713 TAOK3Q9H2K8 898 aa5.74□□□□□ -1.49
LIG3-211ENST00000588713 ZSWIM6Q9HCJ5 1215 aa5.74□□□□□ -1.49
LIG3-211ENST00000588713 ADAMTSL1Q8N6G6 1762 aa5.74□□□□□ -1.49
LIG3-211ENST00000588713 SRPK2P78362 688 aaKnown RBP5.73□□□□□ -1.49
LIG3-211ENST00000588713 PKN2Q16513 984 aaKnown RBP5.73□□□□□ -1.49
LIG3-211ENST00000588713 C2CD5Q86YS7 1000 aa5.73□□□□□ -1.49
LIG3-211ENST00000588713 RNF186Q9NXI6 227 aa5.73□□□□□ -1.49
LIG3-211ENST00000588713 SAGE1Q9NXZ1 904 aa5.73□□□□□ -1.49
LIG3-211ENST00000588713 STK24Q9Y6E0 443 aa5.73□□□□□ -1.49
LIG3-211ENST00000588713 SCN4AP35499 1836 aa5.73□□□□□ -1.49
LIG3-211ENST00000588713 NFAT5O94916 1531 aa5.73□□□□□ -1.49
LIG3-211ENST00000588713 ADGRB1O14514 1584 aa5.72□□□□□ -1.49
LIG3-211ENST00000588713 GPR153Q6NV75 609 aa5.72□□□□□ -1.49
LIG3-211ENST00000588713 LRCH3Q96II8 777 aa5.72□□□□□ -1.49
LIG3-211ENST00000588713 SRP68Q9UHB9 627 aaKnown RBP5.72□□□□□ -1.49
LIG3-211ENST00000588713 UNC80Q8N2C7 3258 aa5.72□□□□□ -1.49
LIG3-211ENST00000588713 STK25O00506 426 aa5.71□□□□□ -1.5
LIG3-211ENST00000588713 SOX1O00570 391 aaPredicted RBP5.71□□□□□ -1.5
LIG3-211ENST00000588713 EN2P19622 333 aaPredicted RBP5.71□□□□□ -1.5
LIG3-211ENST00000588713 ARSIQ5FYB1 569 aa5.71□□□□□ -1.5
LIG3-211ENST00000588713 FBXO46Q6PJ61 603 aaPredicted RBP5.71□□□□□ -1.5
LIG3-211ENST00000588713 ZNF622Q969S3 477 aaKnown RBP eCLIP5.71□□□□□ -1.5
LIG3-211ENST00000588713 CABP1Q9NZU7 370 aa5.71□□□□□ -1.5
LIG3-211ENST00000588713 TMEM265A0A087WTH1 108 aa5.7□□□□□ -1.5
LIG3-211ENST00000588713 H0YIN7 160 aa5.7□□□□□ -1.5
LIG3-211ENST00000588713 POLRMTO00411 1230 aaKnown RBP5.7□□□□□ -1.5
LIG3-211ENST00000588713 KIF23Q02241 960 aaPredicted RBP5.7□□□□□ -1.5
LIG3-211ENST00000588713 AMER1Q5JTC6 1135 aaPredicted RBP5.7□□□□□ -1.5
LIG3-211ENST00000588713 ZNF687Q8N1G0 1237 aa5.7□□□□□ -1.5
LIG3-211ENST00000588713 PIGBQ92521 554 aa5.7□□□□□ -1.5
LIG3-211ENST00000588713 HHIPL1Q96JK4 782 aa5.7□□□□□ -1.5
LIG3-211ENST00000588713 TTC21BQ7Z4L5 1316 aa5.7□□□□□ -1.5
LIG3-211ENST00000588713 ECM2O94769 699 aaPredicted RBP5.69□□□□□ -1.5
LIG3-211ENST00000588713 NEFLP07196 543 aa5.69□□□□□ -1.5
LIG3-211ENST00000588713 LMOD1P29536 600 aaPredicted RBP5.69□□□□□ -1.5
LIG3-211ENST00000588713 HUNKP57058 714 aa5.69□□□□□ -1.5
LIG3-211ENST00000588713 Q7L0L9 218 aa5.69□□□□□ -1.5
LIG3-211ENST00000588713 DEFB123Q8N688 67 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms