RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 U2AF1L5P0DN76 240 aaPredicted RBP15.85■□□□□ 0.13
LIG3-209ENST00000586435 VEGFAP15692 232 aaPredicted RBP15.85■□□□□ 0.13
LIG3-209ENST00000586435 ST5P78524 1137 aa15.85■□□□□ 0.13
LIG3-209ENST00000586435 U2AF1Q01081 240 aaKnown RBP eCLIP15.85■□□□□ 0.13
LIG3-209ENST00000586435 ZNF622Q969S3 477 aaKnown RBP eCLIP15.85■□□□□ 0.13
LIG3-209ENST00000586435 STYK1Q6J9G0 422 aa15.84■□□□□ 0.13
LIG3-209ENST00000586435 JMYQ8N9B5 988 aa15.84■□□□□ 0.13
LIG3-209ENST00000586435 CNKSR1Q969H4 720 aa15.84■□□□□ 0.13
LIG3-209ENST00000586435 C21orf2O43822 256 aa15.83■□□□□ 0.12
LIG3-209ENST00000586435 SRGNP10124 158 aa15.83■□□□□ 0.12
LIG3-209ENST00000586435 SOGA3Q5TF21 947 aa15.83■□□□□ 0.12
LIG3-209ENST00000586435 MCM10Q7L590 875 aa15.83■□□□□ 0.12
LIG3-209ENST00000586435 ZNF652Q9Y2D9 606 aa15.83■□□□□ 0.12
LIG3-209ENST00000586435 PRAMEF22A3QJZ6 481 aa15.82■□□□□ 0.12
LIG3-209ENST00000586435 NPHP1O15259 732 aa15.82■□□□□ 0.12
LIG3-209ENST00000586435 DPY19L2Q6NUT2 758 aa15.82■□□□□ 0.12
LIG3-209ENST00000586435 CCDC24Q8N4L8 307 aa15.82■□□□□ 0.12
LIG3-209ENST00000586435 MASTLQ96GX5 879 aa15.82■□□□□ 0.12
LIG3-209ENST00000586435 TAOK3Q9H2K8 898 aa15.82■□□□□ 0.12
LIG3-209ENST00000586435 HTRA3P83110 453 aa15.81■□□□□ 0.12
LIG3-209ENST00000586435 ERFEQ4G0M1 354 aa15.81■□□□□ 0.12
LIG3-209ENST00000586435 PRPF40BQ6NWY9 871 aaKnown RBP15.81■□□□□ 0.12
LIG3-209ENST00000586435 POTECB2RU33 542 aa15.8■□□□□ 0.12
LIG3-209ENST00000586435 PIP4K2AP48426 406 aaPredicted RBP15.8■□□□□ 0.12
LIG3-209ENST00000586435 NBPF5PQ86XG9 351 aaPredicted RBP15.8■□□□□ 0.12
LIG3-209ENST00000586435 SCN4AP35499 1836 aa15.8■□□□□ 0.12
LIG3-209ENST00000586435 NUP98P52948 1817 aa15.8■□□□□ 0.12
LIG3-209ENST00000586435 KLRG2A4D1S0 409 aaPredicted RBP15.79■□□□□ 0.12
LIG3-209ENST00000586435 NBPF26B4DH59 902 aa15.79■□□□□ 0.12
LIG3-209ENST00000586435 DCTN1Q14203 1278 aa15.79■□□□□ 0.12
LIG3-209ENST00000586435 TAF7Q15545 349 aaPredicted RBP15.79■□□□□ 0.12
LIG3-209ENST00000586435 NBPF10Q6P3W6 841 aaKnown RBP15.79■□□□□ 0.12
LIG3-209ENST00000586435 NBPF15Q8N660 670 aa15.79■□□□□ 0.12
LIG3-209ENST00000586435 ZNF219Q9P2Y4 722 aaPredicted RBP15.79■□□□□ 0.12
LIG3-209ENST00000586435 C7orf43Q8WVR3 580 aa15.78■□□□□ 0.12
LIG3-209ENST00000586435 NPR1P16066 1061 aa15.77■□□□□ 0.12
LIG3-209ENST00000586435 TPTE2Q6XPS3 522 aa15.77■□□□□ 0.12
LIG3-209ENST00000586435 PNISRQ8TF01 805 aaKnown RBP15.77■□□□□ 0.12
LIG3-209ENST00000586435 NIP7Q9Y221 180 aaKnown RBP eCLIP15.77■□□□□ 0.12
LIG3-209ENST00000586435 NEFMP07197 916 aa15.76■□□□□ 0.11
LIG3-209ENST00000586435 CCDC93Q567U6 631 aa15.76■□□□□ 0.11
LIG3-209ENST00000586435 PLEKHF1Q96S99 279 aa15.75■□□□□ 0.11
LIG3-209ENST00000586435 RIC1Q4ADV7 1423 aa15.74■□□□□ 0.11
LIG3-209ENST00000586435 IBTKQ9P2D0 1353 aaPredicted RBP15.74■□□□□ 0.11
LIG3-209ENST00000586435 ERVV-1B6SEH8 477 aa15.73■□□□□ 0.11
LIG3-209ENST00000586435 DDNO94850 711 aaPredicted RBP15.73■□□□□ 0.11
LIG3-209ENST00000586435 FKBP4Q02790 459 aaKnown RBP eCLIP15.73■□□□□ 0.11
LIG3-209ENST00000586435 HLFQ16534 295 aa15.73■□□□□ 0.11
LIG3-209ENST00000586435 L3MBTL3Q96JM7 780 aaPredicted RBP15.73■□□□□ 0.11
LIG3-209ENST00000586435 SNED1Q8TER0 1413 aa15.73■□□□□ 0.11
LIG3-209ENST00000586435 IQCA1LA6NCM1 817 aa15.72■□□□□ 0.11
LIG3-209ENST00000586435 EIF4A1P60842 406 aaKnown RBP15.72■□□□□ 0.11
LIG3-209ENST00000586435 NFE2L2Q16236 605 aa15.72■□□□□ 0.11
LIG3-209ENST00000586435 CRY2Q49AN0 593 aa15.72■□□□□ 0.11
LIG3-209ENST00000586435 CHADLQ6NUI6 762 aa15.72■□□□□ 0.11
LIG3-209ENST00000586435 NYXQ9GZU5 481 aa15.72■□□□□ 0.11
LIG3-209ENST00000586435 MIS18AQ9NYP9 233 aa15.72■□□□□ 0.11
LIG3-209ENST00000586435 ADAMTSL1Q8N6G6 1762 aa15.72■□□□□ 0.11
LIG3-209ENST00000586435 MAP3K15Q6ZN16 1313 aa15.71■□□□□ 0.11
LIG3-209ENST00000586435 ALDH1B1P30837 517 aa15.71■□□□□ 0.11
LIG3-209ENST00000586435 RTKN2Q8IZC4 609 aa15.71■□□□□ 0.11
LIG3-209ENST00000586435 PNNQ9H307 717 aaKnown RBP15.71■□□□□ 0.11
LIG3-209ENST00000586435 ABCC12Q96J65 1359 aa15.71■□□□□ 0.11
LIG3-209ENST00000586435 ERBB4Q15303 1308 aa15.7■□□□□ 0.1
LIG3-209ENST00000586435 PCNTO95613 3336 aa15.7■□□□□ 0.1
LIG3-209ENST00000586435 CREBZFQ9NS37 354 aa15.7■□□□□ 0.1
LIG3-209ENST00000586435 FAM177BA6PVY3 158 aa15.69■□□□□ 0.1
LIG3-209ENST00000586435 GTF2E1P29083 439 aaPredicted RBP15.69■□□□□ 0.1
LIG3-209ENST00000586435 KIF6Q6ZMV9 814 aa15.69■□□□□ 0.1
LIG3-209ENST00000586435 LDHDQ86WU2 507 aa15.69■□□□□ 0.1
LIG3-209ENST00000586435 MAPK8IP3Q9UPT6 1336 aa15.68■□□□□ 0.1
LIG3-209ENST00000586435 ANKRD36CQ5JPF3 1778 aa15.68■□□□□ 0.1
LIG3-209ENST00000586435 POTEIP0CG38 1075 aa15.68■□□□□ 0.1
LIG3-209ENST00000586435 POTEJP0CG39 1038 aa15.68■□□□□ 0.1
LIG3-209ENST00000586435 COL13A1Q5TAT6 717 aaPredicted RBP15.68■□□□□ 0.1
LIG3-209ENST00000586435 CC2D2BQ6DHV5 1058 aa15.68■□□□□ 0.1
LIG3-209ENST00000586435 PSMD1Q99460 953 aa15.68■□□□□ 0.1
LIG3-209ENST00000586435 TAF1DQ9H5J8 278 aaPredicted RBP15.68■□□□□ 0.1
LIG3-209ENST00000586435 ZNF277Q9NRM2 450 aaPredicted RBP15.68■□□□□ 0.1
LIG3-209ENST00000586435 PASKQ96RG2 1323 aa15.68■□□□□ 0.1
LIG3-209ENST00000586435 ZNF541Q9H0D2 1346 aa15.68■□□□□ 0.1
LIG3-209ENST00000586435 FZD9O00144 591 aa15.67■□□□□ 0.1
LIG3-209ENST00000586435 IARSP41252 1262 aaKnown RBP15.67■□□□□ 0.1
LIG3-209ENST00000586435 OLFM4Q6UX06 510 aa15.67■□□□□ 0.1
LIG3-209ENST00000586435 TTLL7Q6ZT98 887 aa15.67■□□□□ 0.1
LIG3-209ENST00000586435 THUMPD2Q9BTF0 503 aaKnown RBP15.67■□□□□ 0.1
LIG3-209ENST00000586435 UBN2Q6ZU65 1347 aa15.67■□□□□ 0.1
LIG3-209ENST00000586435 HSPA1AP0DMV8 641 aaKnown RBP15.66■□□□□ 0.1
LIG3-209ENST00000586435 HSPA1BP0DMV9 641 aaKnown RBP15.66■□□□□ 0.1
LIG3-209ENST00000586435 HOXA10P31260 410 aaPredicted RBP15.66■□□□□ 0.1
LIG3-209ENST00000586435 GRIPAP1Q4V328 841 aa15.66■□□□□ 0.1
LIG3-209ENST00000586435 NUTM1Q86Y26 1132 aa15.66■□□□□ 0.1
LIG3-209ENST00000586435 NGEFQ8N5V2 710 aa15.66■□□□□ 0.1
LIG3-209ENST00000586435 RRP7AQ9Y3A4 280 aaKnown RBP15.66■□□□□ 0.1
LIG3-209ENST00000586435 MYL6BP14649 208 aa15.65■□□□□ 0.1
LIG3-209ENST00000586435 GIGYF2Q6Y7W6 1299 aaKnown RBP15.65■□□□□ 0.1
LIG3-209ENST00000586435 ZNF34Q8IZ26 560 aa15.65■□□□□ 0.1
LIG3-209ENST00000586435 SYNE4Q8N205 404 aa15.65■□□□□ 0.1
LIG3-209ENST00000586435 BABAM1Q9NWV8 329 aa15.65■□□□□ 0.1
LIG3-209ENST00000586435 HACL1Q9UJ83 578 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms