RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	GOLGA6L22	H0YM25	854 aa		14.02	□□□□□ -0.16
CDK5RAP3-231	ENST00000584063	CCDC96	Q2M329	555 aa		14.02	□□□□□ -0.16
CDK5RAP3-231	ENST00000584063	RNF214	Q8ND24	703 aa		14.02	□□□□□ -0.16
CDK5RAP3-231	ENST00000584063	USP26	Q9BXU7	913 aa		14.02	□□□□□ -0.16
CDK5RAP3-231	ENST00000584063	XIRP1	Q702N8	1843 aa	Known RBP	14.02	□□□□□ -0.16
CDK5RAP3-231	ENST00000584063	ANXA1	P04083	346 aa		14.02	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	FKBP5	Q13451	457 aa	Predicted RBP	14.02	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	PLEKHO1	Q53GL0	409 aa	Predicted RBP	14.02	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	DNAJC14	Q6Y2X3	702 aa	Predicted RBP	14.02	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	LARP6	Q9BRS8	491 aa	Known RBP	14.02	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	TAF7	Q15545	349 aa	Predicted RBP	14.01	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	CCDC82	Q8N4S0	544 aa		14.01	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	MARF1	Q9Y4F3	1742 aa	Known RBP	14.01	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	TSHZ1	Q6ZSZ6	1077 aa		14.01	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	GPBP1L1	Q9HC44	474 aa	Predicted RBP	14.01	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	KCNQ3	O43525	872 aa		14	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	PHAX	Q9H814	394 aa	Known RBP	14	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	CIZ1	Q9ULV3	898 aa	Predicted RBP	14	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	KIAA0232	Q92628	1395 aa		14	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	MAP3K5	Q99683	1374 aa		14	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	MAP4K4	O95819	1239 aa	Predicted RBP	14	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	PRR29	P0C7W0	189 aa		14	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	GDPD2	Q9HCC8	539 aa		14	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	ERBB3	P21860	1342 aa		14	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	PRIM1	P49642	420 aa	Known RBP	14	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	RPAP2	Q8IXW5	612 aa	Predicted RBP	14	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	RILPL2	Q969X0	211 aa		14	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	STK31	Q9BXU1	1019 aa		14	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	SPATA31A3	Q5VYP0	1347 aa		13.99	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	RGPD1	P0DJD0	1748 aa		13.99	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	FOXD4	Q12950	439 aa	Predicted RBP	13.99	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	FLII	Q13045	1269 aa		13.99	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	RBSN	Q9H1K0	784 aa		13.99	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	NEK4	P51957	841 aa		13.99	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	CHMP4C	Q96CF2	233 aa		13.99	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	PTPRC	P08575	1304 aa		13.98	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	KIF24	Q5T7B8	1368 aa		13.98	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	BTBD11	A6QL63	1104 aa		13.98	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	ARID4A	P29374	1257 aa	Predicted RBP	13.98	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	ZSCAN23	Q3MJ62	389 aa		13.98	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	TOM1L2	Q6ZVM7	507 aa		13.98	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	NME8	Q8N427	588 aa		13.98	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	IL1RAPL2	Q9NP60	686 aa		13.98	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	LRRFIP2	Q9Y608	721 aa	Known RBP	13.98	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	TRIM6-TRIM34	B2RNG4	842 aa		13.98	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	SKOR2	Q2VWA4	1001 aa	Predicted RBP	13.98	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	UNC5CL	Q8IV45	518 aa		13.98	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	UPF3B	Q9BZI7	483 aa	Known RBP	13.98	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.98	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	ZDHHC9	Q9Y397	364 aa		13.98	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	SYCE3	A1L190	88 aa		13.97	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	EVA1C	P58658	441 aa		13.97	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	RABEP1	Q15276	862 aa		13.97	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	ZNF513	Q8N8E2	541 aa	Predicted RBP	13.97	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	LMBRD1	Q9NUN5	540 aa		13.97	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	MARCH6	O60337	910 aa		13.97	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	PDE1A	P54750	535 aa		13.97	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	PIP4K2B	P78356	416 aa		13.97	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	KIAA1211	Q6ZU35	1233 aa		13.97	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	GPT2	Q8TD30	523 aa		13.97	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	IL25	Q9H293	177 aa		13.97	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	LTN1	O94822	1766 aa		13.97	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	NFAT5	O94916	1531 aa		13.96	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	HDGFL1	Q5TGJ6	251 aa		13.96	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	PALD1	Q9ULE6	856 aa		13.96	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	SLC39A6	Q13433	755 aa		13.96	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	KLHL40	Q2TBA0	621 aa		13.96	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	DNTTIP2	Q5QJE6	756 aa	Known RBP	13.96	□□□□□ -0.17
CDK5RAP3-231	ENST00000584063	TAT	P17735	454 aa	Predicted RBP	13.95	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	AMOT	Q4VCS5	1084 aa		13.95	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	AKAP4	Q5JQC9	854 aa		13.95	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	GNAI2	P04899	355 aa		13.95	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	RBM26	Q5T8P6	1007 aa	Known RBP	13.95	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	NUTM1	Q86Y26	1132 aa		13.95	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	HTATSF1	O43719	755 aa	Known RBP	13.94	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	ANO2	Q9NQ90	1003 aa		13.94	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	NFATC2IP	Q8NCF5	419 aa		13.94	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	DDX54	Q8TDD1	881 aa	Known RBP	13.94	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	TMEM63C	Q9P1W3	806 aa		13.94	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	RGPD2	P0DJD1	1756 aa		13.94	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	TNS3	Q68CZ2	1445 aa		13.94	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	PRAMEF22	A3QJZ6	481 aa		13.94	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	ST18	O60284	1047 aa		13.94	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	MSN	P26038	577 aa	Known RBP	13.94	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	PPP4R3B	Q5MIZ7	849 aa		13.94	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	CCDC30	Q5VVM6	783 aa		13.94	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	EP400NL	Q6ZTU2	488 aa		13.94	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	R3HCC1	Q9Y3T6	440 aa	Known RBP	13.94	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	RNMT	O43148	476 aa	Known RBP	13.93	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	ZNF500	O60304	480 aa	Predicted RBP	13.93	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	CASC1	Q6TDU7	716 aa		13.93	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	CCT4	P50991	539 aa	Known RBP	13.93	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	USP44	Q9H0E7	712 aa		13.93	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	TRPM3	Q9HCF6	1732 aa	Predicted RBP	13.92	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	PDCL3	Q9H2J4	239 aa		13.92	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	RPS6KL1	Q9Y6S9	549 aa		13.92	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	DCC	P43146	1447 aa		13.92	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063		A0A0G2JS52	829 aa		13.92	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	MED1	Q15648	1581 aa	Predicted RBP	13.91	□□□□□ -0.18
CDK5RAP3-231	ENST00000584063	RGPD5	Q99666	1765 aa		13.91	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms