RNA–Protein interactions for RNA: ENST00000583877.5

NUP85-223, Transcript of nucleoporin 85, human

TSL 3

Gene NUP85, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP85-223	ENST00000583877	LTBP3	Q9NS15	1303 aa		11.84	□□□□□ -0.51
NUP85-223	ENST00000583877	C21orf2	O43822	256 aa		11.83	□□□□□ -0.52
NUP85-223	ENST00000583877	TBC1D9B	Q66K14	1250 aa		11.83	□□□□□ -0.52
NUP85-223	ENST00000583877	PRR5L	Q6MZQ0	368 aa		11.83	□□□□□ -0.52
NUP85-223	ENST00000583877	TEX13A	Q9BXU3	409 aa	Predicted RBP	11.83	□□□□□ -0.52
NUP85-223	ENST00000583877	CREBZF	Q9NS37	354 aa		11.83	□□□□□ -0.52
NUP85-223	ENST00000583877	HEG1	Q9ULI3	1381 aa		11.82	□□□□□ -0.52
NUP85-223	ENST00000583877	DIAPH1	O60610	1272 aa	Known RBP	11.82	□□□□□ -0.52
NUP85-223	ENST00000583877	CHADL	Q6NUI6	762 aa		11.82	□□□□□ -0.52
NUP85-223	ENST00000583877	IL6ST	P40189	918 aa	Predicted RBP	11.81	□□□□□ -0.52
NUP85-223	ENST00000583877	ZNF790	Q6PG37	636 aa		11.81	□□□□□ -0.52
NUP85-223	ENST00000583877	CNKSR1	Q969H4	720 aa		11.81	□□□□□ -0.52
NUP85-223	ENST00000583877	ZNF496	Q96IT1	587 aa	Predicted RBP	11.81	□□□□□ -0.52
NUP85-223	ENST00000583877	TAOK3	Q9H2K8	898 aa		11.81	□□□□□ -0.52
NUP85-223	ENST00000583877	NUP98	P52948	1817 aa		11.81	□□□□□ -0.52
NUP85-223	ENST00000583877	TRPM7	Q96QT4	1865 aa		11.8	□□□□□ -0.52
NUP85-223	ENST00000583877	ADAMTSL1	Q8N6G6	1762 aa		11.8	□□□□□ -0.52
NUP85-223	ENST00000583877	TEF	Q10587	303 aa		11.8	□□□□□ -0.52
NUP85-223	ENST00000583877	SOGA3	Q5TF21	947 aa		11.8	□□□□□ -0.52
NUP85-223	ENST00000583877	STYK1	Q6J9G0	422 aa		11.8	□□□□□ -0.52
NUP85-223	ENST00000583877	SETDB2	Q96T68	719 aa		11.8	□□□□□ -0.52
NUP85-223	ENST00000583877	TBC1D2B	Q9UPU7	963 aa		11.8	□□□□□ -0.52
NUP85-223	ENST00000583877	COL3A1	P02461	1466 aa	Predicted RBP	11.79	□□□□□ -0.52
NUP85-223	ENST00000583877	GNAT3	A8MTJ3	354 aa		11.79	□□□□□ -0.52
NUP85-223	ENST00000583877	DDN	O94850	711 aa	Predicted RBP	11.79	□□□□□ -0.52
NUP85-223	ENST00000583877	SRGN	P10124	158 aa		11.79	□□□□□ -0.52
NUP85-223	ENST00000583877	ST5	P78524	1137 aa		11.79	□□□□□ -0.52
NUP85-223	ENST00000583877	PRPF40B	Q6NWY9	871 aa	Known RBP	11.79	□□□□□ -0.52
NUP85-223	ENST00000583877	NPM2	Q86SE8	214 aa	Known RBP	11.79	□□□□□ -0.52
NUP85-223	ENST00000583877	CCDC24	Q8N4L8	307 aa		11.79	□□□□□ -0.52
NUP85-223	ENST00000583877	CNBD1	Q8NA66	436 aa		11.79	□□□□□ -0.52
NUP85-223	ENST00000583877	IL17RE	Q8NFR9	667 aa		11.79	□□□□□ -0.52
NUP85-223	ENST00000583877	MKRN1	Q9UHC7	482 aa	Known RBP	11.79	□□□□□ -0.52
NUP85-223	ENST00000583877	ZNF330	Q9Y3S2	320 aa	Predicted RBP	11.79	□□□□□ -0.52
NUP85-223	ENST00000583877	CNTNAP1	P78357	1384 aa		11.79	□□□□□ -0.52
NUP85-223	ENST00000583877	LAMB4	A4D0S4	1761 aa		11.78	□□□□□ -0.52
NUP85-223	ENST00000583877	IQCA1L	A6NCM1	817 aa		11.78	□□□□□ -0.52
NUP85-223	ENST00000583877	CAMTA2	O94983	1202 aa		11.78	□□□□□ -0.52
NUP85-223	ENST00000583877	POTEI	P0CG38	1075 aa		11.78	□□□□□ -0.52
NUP85-223	ENST00000583877	POTEJ	P0CG39	1038 aa		11.78	□□□□□ -0.52
NUP85-223	ENST00000583877	GAS2L2	Q8NHY3	880 aa		11.78	□□□□□ -0.52
NUP85-223	ENST00000583877	MASTL	Q96GX5	879 aa		11.78	□□□□□ -0.52
NUP85-223	ENST00000583877	FMNL2	Q96PY5	1086 aa		11.78	□□□□□ -0.52
NUP85-223	ENST00000583877	PCGF6	Q9BYE7	350 aa		11.78	□□□□□ -0.52
NUP85-223	ENST00000583877	DLG5	Q8TDM6	1919 aa		11.78	□□□□□ -0.52
NUP85-223	ENST00000583877	NPHP1	O15259	732 aa		11.77	□□□□□ -0.53
NUP85-223	ENST00000583877	A1BG	P04217	495 aa		11.77	□□□□□ -0.53
NUP85-223	ENST00000583877	CACNB1	Q02641	598 aa	Predicted RBP	11.77	□□□□□ -0.53
NUP85-223	ENST00000583877	LDHD	Q86WU2	507 aa		11.77	□□□□□ -0.53
NUP85-223	ENST00000583877	L3MBTL3	Q96JM7	780 aa	Predicted RBP	11.77	□□□□□ -0.53
NUP85-223	ENST00000583877	PASK	Q96RG2	1323 aa		11.77	□□□□□ -0.53
NUP85-223	ENST00000583877	CEMIP	Q8WUJ3	1361 aa		11.77	□□□□□ -0.53
NUP85-223	ENST00000583877	PER1	O15534	1290 aa	Predicted RBP	11.76	□□□□□ -0.53
NUP85-223	ENST00000583877	TAF1D	Q9H5J8	278 aa	Predicted RBP	11.76	□□□□□ -0.53
NUP85-223	ENST00000583877	PRDM10	Q9NQV6	1147 aa		11.76	□□□□□ -0.53
NUP85-223	ENST00000583877	KIF7	Q2M1P5	1343 aa		11.76	□□□□□ -0.53
NUP85-223	ENST00000583877	FOXN1	O15353	648 aa		11.75	□□□□□ -0.53
NUP85-223	ENST00000583877	CCDC93	Q567U6	631 aa		11.75	□□□□□ -0.53
NUP85-223	ENST00000583877	CC2D1B	Q5T0F9	858 aa	Known RBP	11.75	□□□□□ -0.53
NUP85-223	ENST00000583877	CLEC4G	Q6UXB4	293 aa		11.75	□□□□□ -0.53
NUP85-223	ENST00000583877	DZIP3	Q86Y13	1208 aa	Known RBP	11.75	□□□□□ -0.53
NUP85-223	ENST00000583877	C7orf43	Q8WVR3	580 aa		11.75	□□□□□ -0.53
NUP85-223	ENST00000583877	TMEM88B	A6NKF7	163 aa		11.74	□□□□□ -0.53
NUP85-223	ENST00000583877	BTBD11	A6QL63	1104 aa		11.74	□□□□□ -0.53
NUP85-223	ENST00000583877	U2SURP	O15042	1029 aa	Known RBP	11.74	□□□□□ -0.53
NUP85-223	ENST00000583877	NPR1	P16066	1061 aa		11.74	□□□□□ -0.53
NUP85-223	ENST00000583877	NBPF5P	Q86XG9	351 aa	Predicted RBP	11.74	□□□□□ -0.53
NUP85-223	ENST00000583877	SPOCK2	Q92563	424 aa		11.74	□□□□□ -0.53
NUP85-223	ENST00000583877	ZNF652	Q9Y2D9	606 aa		11.74	□□□□□ -0.53
NUP85-223	ENST00000583877	NPC1L1	Q9UHC9	1359 aa		11.74	□□□□□ -0.53
NUP85-223	ENST00000583877	KLRG2	A4D1S0	409 aa	Predicted RBP	11.73	□□□□□ -0.53
NUP85-223	ENST00000583877	RGL2	O15211	777 aa		11.73	□□□□□ -0.53
NUP85-223	ENST00000583877	ITGBL1	O95965	494 aa	Predicted RBP	11.73	□□□□□ -0.53
NUP85-223	ENST00000583877	CTCF	P49711	727 aa	Predicted RBP	11.73	□□□□□ -0.53
NUP85-223	ENST00000583877	FKBP4	Q02790	459 aa	Known RBP eCLIP	11.73	□□□□□ -0.53
NUP85-223	ENST00000583877	PLCD3	Q8N3E9	789 aa		11.73	□□□□□ -0.53
NUP85-223	ENST00000583877	AIDA	Q96BJ3	306 aa		11.73	□□□□□ -0.53
NUP85-223	ENST00000583877	USP16	Q9Y5T5	823 aa		11.73	□□□□□ -0.53
NUP85-223	ENST00000583877	ZNF541	Q9H0D2	1346 aa		11.72	□□□□□ -0.53
NUP85-223	ENST00000583877	KCNQ3	O43525	872 aa		11.72	□□□□□ -0.53
NUP85-223	ENST00000583877	VEGFB	P49765	207 aa		11.72	□□□□□ -0.53
NUP85-223	ENST00000583877	RTKN2	Q8IZC4	609 aa		11.72	□□□□□ -0.53
NUP85-223	ENST00000583877	HACL1	Q9UJ83	578 aa		11.72	□□□□□ -0.53
NUP85-223	ENST00000583877	KDM3B	Q7LBC6	1761 aa		11.72	□□□□□ -0.53
NUP85-223	ENST00000583877	THSD7B	Q9C0I4	1608 aa		11.71	□□□□□ -0.53
NUP85-223	ENST00000583877	SNRPA1	P09661	255 aa	Known RBP	11.71	□□□□□ -0.53
NUP85-223	ENST00000583877	CNGB1	Q14028	1251 aa	Predicted RBP	11.71	□□□□□ -0.53
NUP85-223	ENST00000583877	EAPP	Q56P03	285 aa	Predicted RBP	11.71	□□□□□ -0.53
NUP85-223	ENST00000583877	TPTE2	Q6XPS3	522 aa		11.71	□□□□□ -0.53
NUP85-223	ENST00000583877	PNMA8A	Q86V59	439 aa	Predicted RBP	11.71	□□□□□ -0.53
NUP85-223	ENST00000583877	ZNF277	Q9NRM2	450 aa	Predicted RBP	11.71	□□□□□ -0.53
NUP85-223	ENST00000583877	WBP1L	Q9NX94	342 aa		11.71	□□□□□ -0.53
NUP85-223	ENST00000583877	LTBP1	Q14766	1721 aa		11.71	□□□□□ -0.54
NUP85-223	ENST00000583877	FZD9	O00144	591 aa		11.7	□□□□□ -0.54
NUP85-223	ENST00000583877	ALDH1B1	P30837	517 aa		11.7	□□□□□ -0.54
NUP85-223	ENST00000583877	EPHX2	P34913	555 aa		11.7	□□□□□ -0.54
NUP85-223	ENST00000583877	PIP4K2A	P48426	406 aa	Predicted RBP	11.7	□□□□□ -0.54
NUP85-223	ENST00000583877	MIER1	Q8N108	512 aa		11.7	□□□□□ -0.54
NUP85-223	ENST00000583877	PHACTR3	Q96KR7	559 aa		11.7	□□□□□ -0.54
NUP85-223	ENST00000583877	NIP7	Q9Y221	180 aa	Known RBP eCLIP	11.7	□□□□□ -0.54

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