RNA–Protein interactions for RNA: ENST00000583328.5

TOP3A-215, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-215ENST00000583328 EAPPQ56P03 285 aaPredicted RBP16.6■□□□□ 0.25
TOP3A-215ENST00000583328 FMNL2Q96PY5 1086 aa16.6■□□□□ 0.25
TOP3A-215ENST00000583328 CLEC11AQ9Y240 323 aa16.6■□□□□ 0.25
TOP3A-215ENST00000583328 PASKQ96RG2 1323 aa16.6■□□□□ 0.25
TOP3A-215ENST00000583328 CCDC88AQ3V6T2 1871 aa16.6■□□□□ 0.25
TOP3A-215ENST00000583328 CCDC93Q567U6 631 aa16.59■□□□□ 0.25
TOP3A-215ENST00000583328 DZIP3Q86Y13 1208 aaKnown RBP16.59■□□□□ 0.25
TOP3A-215ENST00000583328 GAS2L2Q8NHY3 880 aa16.59■□□□□ 0.25
TOP3A-215ENST00000583328 L3MBTL3Q96JM7 780 aaPredicted RBP16.59■□□□□ 0.25
TOP3A-215ENST00000583328 U2SURPO15042 1029 aaKnown RBP16.58■□□□□ 0.24
TOP3A-215ENST00000583328 ITGBL1O95965 494 aaPredicted RBP16.57■□□□□ 0.24
TOP3A-215ENST00000583328 NBPF5PQ86XG9 351 aaPredicted RBP16.57■□□□□ 0.24
TOP3A-215ENST00000583328 C7orf43Q8WVR3 580 aa16.57■□□□□ 0.24
TOP3A-215ENST00000583328 HACL1Q9UJ83 578 aa16.57■□□□□ 0.24
TOP3A-215ENST00000583328 NPR1P16066 1061 aa16.56■□□□□ 0.24
TOP3A-215ENST00000583328 FKBP4Q02790 459 aaKnown RBP eCLIP16.56■□□□□ 0.24
TOP3A-215ENST00000583328 CC2D1BQ5T0F9 858 aaKnown RBP16.56■□□□□ 0.24
TOP3A-215ENST00000583328 ZNF277Q9NRM2 450 aaPredicted RBP16.56■□□□□ 0.24
TOP3A-215ENST00000583328 WBP1LQ9NX94 342 aa16.56■□□□□ 0.24
TOP3A-215ENST00000583328 BTBD11A6QL63 1104 aa16.55■□□□□ 0.24
TOP3A-215ENST00000583328 KCNQ3O43525 872 aa16.55■□□□□ 0.24
TOP3A-215ENST00000583328 EPHX2P34913 555 aa16.55■□□□□ 0.24
TOP3A-215ENST00000583328 LBX1P52954 281 aa16.55■□□□□ 0.24
TOP3A-215ENST00000583328 CLEC4GQ6UXB4 293 aa16.55■□□□□ 0.24
TOP3A-215ENST00000583328 USP16Q9Y5T5 823 aa16.55■□□□□ 0.24
TOP3A-215ENST00000583328 FER1L6Q2WGJ9 1857 aa16.54■□□□□ 0.24
TOP3A-215ENST00000583328 ANKRD31Q8N7Z5 1873 aa16.54■□□□□ 0.24
TOP3A-215ENST00000583328 ZNF541Q9H0D2 1346 aa16.54■□□□□ 0.24
TOP3A-215ENST00000583328 PIP4K2AP48426 406 aaPredicted RBP16.54■□□□□ 0.24
TOP3A-215ENST00000583328 DEFB115Q30KQ5 88 aa16.54■□□□□ 0.24
TOP3A-215ENST00000583328 TPTE2Q6XPS3 522 aa16.54■□□□□ 0.24
TOP3A-215ENST00000583328 ZNF652Q9Y2D9 606 aa16.54■□□□□ 0.24
TOP3A-215ENST00000583328 PNMA8AQ86V59 439 aaPredicted RBP16.53■□□□□ 0.24
TOP3A-215ENST00000583328 RTKN2Q8IZC4 609 aa16.53■□□□□ 0.24
TOP3A-215ENST00000583328 CNTROBQ8N137 903 aa16.53■□□□□ 0.24
TOP3A-215ENST00000583328 SLX4Q8IY92 1834 aa16.53■□□□□ 0.24
TOP3A-215ENST00000583328 DICER1Q9UPY3 1922 aaKnown RBP16.53■□□□□ 0.24
TOP3A-215ENST00000583328 CNGB1Q14028 1251 aaPredicted RBP16.52■□□□□ 0.24
TOP3A-215ENST00000583328 MAP1SQ66K74 1059 aaPredicted RBP16.52■□□□□ 0.24
TOP3A-215ENST00000583328 OLFM4Q6UX06 510 aa16.52■□□□□ 0.24
TOP3A-215ENST00000583328 SYNE4Q8N205 404 aa16.52■□□□□ 0.24
TOP3A-215ENST00000583328 UBR2Q8IWV8 1755 aa16.51■□□□□ 0.23
TOP3A-215ENST00000583328 COL11A2P13942 1736 aaPredicted RBP16.51■□□□□ 0.23
TOP3A-215ENST00000583328 KLRG2A4D1S0 409 aaPredicted RBP16.51■□□□□ 0.23
TOP3A-215ENST00000583328 RASSF10A6NK89 507 aa16.51■□□□□ 0.23
TOP3A-215ENST00000583328 FAM177BA6PVY3 158 aa16.51■□□□□ 0.23
TOP3A-215ENST00000583328 PER1O15534 1290 aaPredicted RBP16.51■□□□□ 0.23
TOP3A-215ENST00000583328 IARSP41252 1262 aaKnown RBP16.51■□□□□ 0.23
TOP3A-215ENST00000583328 MAP2K1Q02750 393 aaPredicted RBP16.51■□□□□ 0.23
TOP3A-215ENST00000583328 ABT1Q9ULW3 272 aaKnown RBP16.51■□□□□ 0.23
TOP3A-215ENST00000583328 NIP7Q9Y221 180 aaKnown RBP eCLIP16.51■□□□□ 0.23
TOP3A-215ENST00000583328 RNF123Q5XPI4 1314 aa16.5■□□□□ 0.23
TOP3A-215ENST00000583328 WDR33Q9C0J8 1336 aaKnown RBP16.5■□□□□ 0.23
TOP3A-215ENST00000583328 PRAMEF22A3QJZ6 481 aa16.5■□□□□ 0.23
TOP3A-215ENST00000583328 FZD9O00144 591 aa16.5■□□□□ 0.23
TOP3A-215ENST00000583328 SNRPA1P09661 255 aaKnown RBP16.5■□□□□ 0.23
TOP3A-215ENST00000583328 HSPA8P11142 646 aaKnown RBP16.5■□□□□ 0.23
TOP3A-215ENST00000583328 GTF2E1P29083 439 aaPredicted RBP16.5■□□□□ 0.23
TOP3A-215ENST00000583328 ALDH1B1P30837 517 aa16.5■□□□□ 0.23
TOP3A-215ENST00000583328 SCN7AQ01118 1682 aa16.5■□□□□ 0.23
TOP3A-215ENST00000583328 KIF7Q2M1P5 1343 aa16.49■□□□□ 0.23
TOP3A-215ENST00000583328 JDP2Q8WYK2 163 aa16.49■□□□□ 0.23
TOP3A-215ENST00000583328 ABHD8Q96I13 439 aa16.49■□□□□ 0.23
TOP3A-215ENST00000583328 CEMIPQ8WUJ3 1361 aa16.49■□□□□ 0.23
TOP3A-215ENST00000583328 GPC2Q8N158 579 aa16.48■□□□□ 0.23
TOP3A-215ENST00000583328 PHACTR3Q96KR7 559 aa16.48■□□□□ 0.23
TOP3A-215ENST00000583328 PRKAR2BP31323 418 aa16.47■□□□□ 0.23
TOP3A-215ENST00000583328 EIF6P56537 245 aaKnown RBP16.47■□□□□ 0.23
TOP3A-215ENST00000583328 RTF1Q92541 710 aaKnown RBP16.47■□□□□ 0.23
TOP3A-215ENST00000583328 DDX21Q9NR30 783 aaKnown RBP eCLIP16.47■□□□□ 0.23
TOP3A-215ENST00000583328 GJA3Q9Y6H8 435 aa16.47■□□□□ 0.23
TOP3A-215ENST00000583328 SCN4AP35499 1836 aa16.47■□□□□ 0.23
TOP3A-215ENST00000583328 LMOD1P29536 600 aaPredicted RBP16.46■□□□□ 0.23
TOP3A-215ENST00000583328 PAXIP1Q6ZW49 1069 aaPredicted RBP16.46■□□□□ 0.23
TOP3A-215ENST00000583328 BEGAINQ9BUH8 593 aa16.46■□□□□ 0.23
TOP3A-215ENST00000583328 VIRMAQ69YN4 1812 aaKnown RBP16.46■□□□□ 0.23
TOP3A-215ENST00000583328 NBPF26B4DH59 902 aa16.45■□□□□ 0.22
TOP3A-215ENST00000583328 RGL2O15211 777 aa16.45■□□□□ 0.22
TOP3A-215ENST00000583328 HLFQ16534 295 aa16.45■□□□□ 0.22
TOP3A-215ENST00000583328 FAM161AQ3B820 660 aa16.45■□□□□ 0.22
TOP3A-215ENST00000583328 NBPF10Q6P3W6 841 aaKnown RBP16.45■□□□□ 0.22
TOP3A-215ENST00000583328 NBPF15Q8N660 670 aa16.45■□□□□ 0.22
TOP3A-215ENST00000583328 PSMD1Q99460 953 aa16.45■□□□□ 0.22
TOP3A-215ENST00000583328 ECE1P42892 770 aa16.44■□□□□ 0.22
TOP3A-215ENST00000583328 GRM1Q13255 1194 aa16.44■□□□□ 0.22
TOP3A-215ENST00000583328 CC2D2BQ6DHV5 1058 aa16.44■□□□□ 0.22
TOP3A-215ENST00000583328 MCM10Q7L590 875 aa16.44■□□□□ 0.22
TOP3A-215ENST00000583328 SLC34A2O95436 690 aa16.43■□□□□ 0.22
TOP3A-215ENST00000583328 CAPNS2Q96L46 248 aa16.43■□□□□ 0.22
TOP3A-215ENST00000583328 CFAP53Q96M91 514 aa16.43■□□□□ 0.22
TOP3A-215ENST00000583328 RSPH6AQ9H0K4 717 aa16.43■□□□□ 0.22
TOP3A-215ENST00000583328 COL3A1P02461 1466 aaPredicted RBP16.42■□□□□ 0.22
TOP3A-215ENST00000583328 CCDC85CA6NKD9 419 aa16.42■□□□□ 0.22
TOP3A-215ENST00000583328 EPS15P42566 896 aa16.42■□□□□ 0.22
TOP3A-215ENST00000583328 FMR1Q06787 632 aaKnown RBP eCLIP16.42■□□□□ 0.22
TOP3A-215ENST00000583328 NUTM1Q86Y26 1132 aa16.42■□□□□ 0.22
TOP3A-215ENST00000583328 LARGE2Q8N3Y3 721 aa16.42■□□□□ 0.22
TOP3A-215ENST00000583328 NGEFQ8N5V2 710 aa16.42■□□□□ 0.22
TOP3A-215ENST00000583328 GPR101Q96P66 508 aaPredicted RBP16.42■□□□□ 0.22
TOP3A-215ENST00000583328 NYXQ9GZU5 481 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms