RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 SYTL4Q96C24 671 aaPredicted RBP13.19□□□□□ -0.3
SS18-217ENST00000580958 SBF2Q86WG5 1849 aa13.18□□□□□ -0.3
SS18-217ENST00000580958 A0A0G2JS52 829 aa13.18□□□□□ -0.3
SS18-217ENST00000580958 NBPF26B4DH59 902 aa13.18□□□□□ -0.3
SS18-217ENST00000580958 GNAI2P04899 355 aa13.18□□□□□ -0.3
SS18-217ENST00000580958 NBPF14Q5TI25 921 aa13.18□□□□□ -0.3
SS18-217ENST00000580958 NBPF10Q6P3W6 841 aaKnown RBP13.18□□□□□ -0.3
SS18-217ENST00000580958 COPS6Q7L5N1 327 aa13.18□□□□□ -0.3
SS18-217ENST00000580958 LRP10Q7Z4F1 713 aa13.18□□□□□ -0.3
SS18-217ENST00000580958 RPAP2Q8IXW5 612 aaPredicted RBP13.18□□□□□ -0.3
SS18-217ENST00000580958 NBPF15Q8N660 670 aa13.18□□□□□ -0.3
SS18-217ENST00000580958 ACSBG1Q96GR2 724 aa13.18□□□□□ -0.3
SS18-217ENST00000580958 ATRNO75882 1429 aa13.17□□□□□ -0.3
SS18-217ENST00000580958 A1BGP04217 495 aa13.17□□□□□ -0.3
SS18-217ENST00000580958 RIC3Q7Z5B4 369 aa13.17□□□□□ -0.3
SS18-217ENST00000580958 DNAJC10Q8IXB1 793 aa13.17□□□□□ -0.3
SS18-217ENST00000580958 GCC1Q96CN9 775 aa13.17□□□□□ -0.3
SS18-217ENST00000580958 USP44Q9H0E7 712 aa13.17□□□□□ -0.3
SS18-217ENST00000580958 BTAF1O14981 1849 aa13.16□□□□□ -0.3
SS18-217ENST00000580958 ALDH1L1O75891 902 aa13.16□□□□□ -0.3
SS18-217ENST00000580958 MYT1Q01538 1121 aa13.16□□□□□ -0.3
SS18-217ENST00000580958 VSIG10Q8N0Z9 540 aa13.16□□□□□ -0.3
SS18-217ENST00000580958 LRRFIP2Q9Y608 721 aaKnown RBP13.16□□□□□ -0.3
SS18-217ENST00000580958 CICQ96RK0 1608 aaPredicted RBP13.16□□□□□ -0.3
SS18-217ENST00000580958 NHSQ6T4R5 1651 aa13.15□□□□□ -0.3
SS18-217ENST00000580958 UBTFL1P0CB47 393 aaPredicted RBP13.15□□□□□ -0.3
SS18-217ENST00000580958 PDE4AP27815 886 aa13.15□□□□□ -0.3
SS18-217ENST00000580958 NUCB1Q02818 461 aa13.15□□□□□ -0.3
SS18-217ENST00000580958 EVX2Q03828 476 aa13.15□□□□□ -0.3
SS18-217ENST00000580958 TEX13AQ9BXU3 409 aaPredicted RBP13.15□□□□□ -0.3
SS18-217ENST00000580958 BRWD3Q6RI45 1802 aa13.15□□□□□ -0.3
SS18-217ENST00000580958 ANKRD36CQ5JPF3 1778 aa13.15□□□□□ -0.31
SS18-217ENST00000580958 MYH14Q7Z406 1995 aaKnown RBP13.14□□□□□ -0.31
SS18-217ENST00000580958 COL5A3P25940 1745 aaPredicted RBP13.14□□□□□ -0.31
SS18-217ENST00000580958 NUP98P52948 1817 aa13.14□□□□□ -0.31
SS18-217ENST00000580958 C19orf67A6NJJ6 358 aa13.14□□□□□ -0.31
SS18-217ENST00000580958 SPDYE4A6NLX3 237 aa13.14□□□□□ -0.31
SS18-217ENST00000580958 HMMRO75330 724 aa13.14□□□□□ -0.31
SS18-217ENST00000580958 CWF19L2Q2TBE0 894 aaKnown RBP13.14□□□□□ -0.31
SS18-217ENST00000580958 ANKRD13DQ6ZTN6 518 aa13.14□□□□□ -0.31
SS18-217ENST00000580958 LINS1Q8NG48 757 aa13.14□□□□□ -0.31
SS18-217ENST00000580958 SLC4A9Q96Q91 983 aa13.14□□□□□ -0.31
SS18-217ENST00000580958 MYD88Q99836 296 aa13.14□□□□□ -0.31
SS18-217ENST00000580958 METTL22Q9BUU2 404 aaPredicted RBP13.14□□□□□ -0.31
SS18-217ENST00000580958 DCTPP1Q9H773 170 aa13.14□□□□□ -0.31
SS18-217ENST00000580958 RBM19Q9Y4C8 960 aaKnown RBP13.14□□□□□ -0.31
SS18-217ENST00000580958 RREB1Q92766 1687 aa13.14□□□□□ -0.31
SS18-217ENST00000580958 NBPF7P0C2Y1 421 aaPredicted RBP13.13□□□□□ -0.31
SS18-217ENST00000580958 ATP8B2P98198 1209 aa13.13□□□□□ -0.31
SS18-217ENST00000580958 NEXNQ0ZGT2 675 aa13.13□□□□□ -0.31
SS18-217ENST00000580958 ANKRD45Q5TZF3 282 aa13.13□□□□□ -0.31
SS18-217ENST00000580958 TTLL7Q6ZT98 887 aa13.13□□□□□ -0.31
SS18-217ENST00000580958 CHD1LQ86WJ1 897 aa13.13□□□□□ -0.31
SS18-217ENST00000580958 GJD4Q96KN9 370 aaPredicted RBP13.13□□□□□ -0.31
SS18-217ENST00000580958 LNPKQ9C0E8 428 aa13.13□□□□□ -0.31
SS18-217ENST00000580958 TRPC5Q9UL62 973 aaPredicted RBP13.13□□□□□ -0.31
SS18-217ENST00000580958 ZNF831Q5JPB2 1677 aa13.12□□□□□ -0.31
SS18-217ENST00000580958 IGKV5-2P06315 115 aa13.12□□□□□ -0.31
SS18-217ENST00000580958 PLBD2Q8NHP8 589 aa13.12□□□□□ -0.31
SS18-217ENST00000580958 C9orf78Q9NZ63 289 aaPredicted RBP13.12□□□□□ -0.31
SS18-217ENST00000580958 PNMA6EA0A0J9YXQ4 647 aa13.11□□□□□ -0.31
SS18-217ENST00000580958 NEURL1BA8MQ27 555 aa13.11□□□□□ -0.31
SS18-217ENST00000580958 KCNQ2O43526 872 aa13.11□□□□□ -0.31
SS18-217ENST00000580958 STARD3NLO95772 234 aa13.11□□□□□ -0.31
SS18-217ENST00000580958 BACH2Q9BYV9 841 aa13.11□□□□□ -0.31
SS18-217ENST00000580958 IBTKQ9P2D0 1353 aaPredicted RBP13.1□□□□□ -0.31
SS18-217ENST00000580958 GRM8O00222 908 aa13.1□□□□□ -0.31
SS18-217ENST00000580958 CYP19A1P11511 503 aaPredicted RBP13.1□□□□□ -0.31
SS18-217ENST00000580958 FAM161AQ3B820 660 aa13.1□□□□□ -0.31
SS18-217ENST00000580958 ZNF330Q9Y3S2 320 aaPredicted RBP13.1□□□□□ -0.31
SS18-217ENST00000580958 UTYO14607 1347 aa13.1□□□□□ -0.31
SS18-217ENST00000580958 PALLDQ8WX93 1383 aa13.09□□□□□ -0.31
SS18-217ENST00000580958 ATP5J2-PTCD1G3V325 749 aa13.09□□□□□ -0.31
SS18-217ENST00000580958 GCKRQ14397 625 aa13.09□□□□□ -0.31
SS18-217ENST00000580958 PPP1R42Q7Z4L9 355 aa13.09□□□□□ -0.31
SS18-217ENST00000580958 SMARCC1Q92922 1105 aaPredicted RBP13.09□□□□□ -0.31
SS18-217ENST00000580958 ZBTB3Q9H5J0 574 aa13.09□□□□□ -0.31
SS18-217ENST00000580958 TAF1LQ8IZX4 1826 aa13.09□□□□□ -0.31
SS18-217ENST00000580958 LY75O60449 1722 aa13.08□□□□□ -0.32
SS18-217ENST00000580958 LOC102724428A0A0B4J2F2 783 aa13.08□□□□□ -0.32
SS18-217ENST00000580958 APBB1O00213 710 aa13.08□□□□□ -0.32
SS18-217ENST00000580958 SMARCA5O60264 1052 aaPredicted RBP13.08□□□□□ -0.32
SS18-217ENST00000580958 ATP6V1AP38606 617 aa13.08□□□□□ -0.32
SS18-217ENST00000580958 SIK1P57059 783 aa13.08□□□□□ -0.32
SS18-217ENST00000580958 C8orf34Q49A92 452 aa13.08□□□□□ -0.32
SS18-217ENST00000580958 SSH3Q8TE77 659 aa13.08□□□□□ -0.32
SS18-217ENST00000580958 SUCLG2Q96I99 432 aa13.08□□□□□ -0.32
SS18-217ENST00000580958 QTRT2Q9H974 415 aaKnown RBP13.08□□□□□ -0.32
SS18-217ENST00000580958 ZBTB1Q9Y2K1 713 aa13.08□□□□□ -0.32
SS18-217ENST00000580958 TUBGCP6Q96RT7 1819 aa13.07□□□□□ -0.32
SS18-217ENST00000580958 ONECUT3O60422 494 aaPredicted RBP13.07□□□□□ -0.32
SS18-217ENST00000580958 FAM182BQ5T319 152 aa13.07□□□□□ -0.32
SS18-217ENST00000580958 KIF6Q6ZMV9 814 aa13.07□□□□□ -0.32
SS18-217ENST00000580958 SEPT12Q8IYM1 358 aa13.07□□□□□ -0.32
SS18-217ENST00000580958 ZBTB47Q9UFB7 747 aaPredicted RBP13.07□□□□□ -0.32
SS18-217ENST00000580958 HDAC5Q9UQL6 1122 aa13.07□□□□□ -0.32
SS18-217ENST00000580958 EXOC6BQ9Y2D4 811 aa13.07□□□□□ -0.32
SS18-217ENST00000580958 MYH3P11055 1940 aa13.07□□□□□ -0.32
SS18-217ENST00000580958 SRGAP3O43295 1099 aa13.06□□□□□ -0.32
SS18-217ENST00000580958 ITPK1Q13572 414 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 109 ms