RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 POTEJP0CG39 1038 aa13.25□□□□□ -0.29
SS18-210ENST00000578700 UBR2Q8IWV8 1755 aa13.25□□□□□ -0.29
SS18-210ENST00000578700 EIF5P55010 431 aaKnown RBP13.24□□□□□ -0.29
SS18-210ENST00000578700 CHADLQ6NUI6 762 aa13.24□□□□□ -0.29
SS18-210ENST00000578700 BRIP1Q9BX63 1249 aa13.24□□□□□ -0.29
SS18-210ENST00000578700 ANKRD31Q8N7Z5 1873 aa13.24□□□□□ -0.29
SS18-210ENST00000578700 DIAPH1O60610 1272 aaKnown RBP13.23□□□□□ -0.29
SS18-210ENST00000578700 A1BGP04217 495 aa13.23□□□□□ -0.29
SS18-210ENST00000578700 TEFQ10587 303 aa13.23□□□□□ -0.29
SS18-210ENST00000578700 PRR5LQ6MZQ0 368 aa13.23□□□□□ -0.29
SS18-210ENST00000578700 SETDB2Q96T68 719 aa13.23□□□□□ -0.29
SS18-210ENST00000578700 TAOK3Q9H2K8 898 aa13.23□□□□□ -0.29
SS18-210ENST00000578700 CREBZFQ9NS37 354 aa13.23□□□□□ -0.29
SS18-210ENST00000578700 SALL2Q9Y467 1007 aaPredicted RBP13.23□□□□□ -0.29
SS18-210ENST00000578700 U2SURPO15042 1029 aaKnown RBP13.22□□□□□ -0.29
SS18-210ENST00000578700 NEFMP07197 916 aa13.22□□□□□ -0.29
SS18-210ENST00000578700 U2AF1L5P0DN76 240 aaPredicted RBP13.22□□□□□ -0.29
SS18-210ENST00000578700 U2AF1Q01081 240 aaKnown RBP eCLIP13.22□□□□□ -0.292e-6■■■■□ 21.7
SS18-210ENST00000578700 RUNDC1Q96C34 613 aa13.22□□□□□ -0.29
SS18-210ENST00000578700 ZNF496Q96IT1 587 aaPredicted RBP13.22□□□□□ -0.29
SS18-210ENST00000578700 PDZRN3Q9UPQ7 1066 aa13.22□□□□□ -0.29
SS18-210ENST00000578700 CACNA1SQ13698 1873 aa13.22□□□□□ -0.29
SS18-210ENST00000578700 FOXN1O15353 648 aa13.21□□□□□ -0.29
SS18-210ENST00000578700 ST5P78524 1137 aa13.21□□□□□ -0.29
SS18-210ENST00000578700 EAPPQ56P03 285 aaPredicted RBP13.21□□□□□ -0.29
SS18-210ENST00000578700 CNBD1Q8NA66 436 aa13.21□□□□□ -0.29
SS18-210ENST00000578700 CNKSR1Q969H4 720 aa13.21□□□□□ -0.29
SS18-210ENST00000578700 CLEC11AQ9Y240 323 aa13.21□□□□□ -0.29
SS18-210ENST00000578700 COL11A2P13942 1736 aaPredicted RBP13.2□□□□□ -0.3
SS18-210ENST00000578700 PIP4K2AP48426 406 aaPredicted RBP13.2□□□□□ -0.3
SS18-210ENST00000578700 PRPF40BQ6NWY9 871 aaKnown RBP13.2□□□□□ -0.3
SS18-210ENST00000578700 ZNF790Q6PG37 636 aa13.2□□□□□ -0.3
SS18-210ENST00000578700 CCDC146Q8IYE0 955 aa13.2□□□□□ -0.3
SS18-210ENST00000578700 IL17REQ8NFR9 667 aa13.2□□□□□ -0.3
SS18-210ENST00000578700 TEX13AQ9BXU3 409 aaPredicted RBP13.2□□□□□ -0.3
SS18-210ENST00000578700 SCN7AQ01118 1682 aa13.2□□□□□ -0.3
SS18-210ENST00000578700 ARFGEF2Q9Y6D5 1785 aa13.2□□□□□ -0.3
SS18-210ENST00000578700 IL6STP40189 918 aaPredicted RBP13.19□□□□□ -0.3
SS18-210ENST00000578700 STYK1Q6J9G0 422 aa13.19□□□□□ -0.3
SS18-210ENST00000578700 DZIP3Q86Y13 1208 aaKnown RBP13.19□□□□□ -0.3
SS18-210ENST00000578700 AIDAQ96BJ3 306 aa13.19□□□□□ -0.3
SS18-210ENST00000578700 MASTLQ96GX5 879 aa13.19□□□□□ -0.3
SS18-210ENST00000578700 HEG1Q9ULI3 1381 aa13.19□□□□□ -0.3
SS18-210ENST00000578700 MAPK8IP3Q9UPT6 1336 aa13.18□□□□□ -0.3
SS18-210ENST00000578700 IQCA1LA6NCM1 817 aa13.18□□□□□ -0.3
SS18-210ENST00000578700 FAM177BA6PVY3 158 aa13.18□□□□□ -0.3
SS18-210ENST00000578700 GNAT3A8MTJ3 354 aa13.18□□□□□ -0.3
SS18-210ENST00000578700 APAF1O14727 1248 aa13.18□□□□□ -0.3
SS18-210ENST00000578700 KCNQ3O43525 872 aa13.18□□□□□ -0.3
SS18-210ENST00000578700 CAMTA2O94983 1202 aa13.18□□□□□ -0.3
SS18-210ENST00000578700 SRGNP10124 158 aa13.18□□□□□ -0.3
SS18-210ENST00000578700 FMNL2Q96PY5 1086 aa13.18□□□□□ -0.3
SS18-210ENST00000578700 SUPT16HQ9Y5B9 1047 aaKnown RBP13.18□□□□□ -0.3
SS18-210ENST00000578700 SIPA1L3O60292 1781 aaPredicted RBP13.17□□□□□ -0.3
SS18-210ENST00000578700 BTBD11A6QL63 1104 aa13.17□□□□□ -0.3
SS18-210ENST00000578700 VEGFBP49765 207 aa13.17□□□□□ -0.3
SS18-210ENST00000578700 GOLGA2Q08379 1002 aa13.17□□□□□ -0.3
SS18-210ENST00000578700 SOGA3Q5TF21 947 aa13.17□□□□□ -0.3
SS18-210ENST00000578700 LDHDQ86WU2 507 aa13.17□□□□□ -0.3
SS18-210ENST00000578700 NBPF5PQ86XG9 351 aaPredicted RBP13.17□□□□□ -0.3
SS18-210ENST00000578700 GAS2L2Q8NHY3 880 aa13.17□□□□□ -0.3
SS18-210ENST00000578700 TAF1DQ9H5J8 278 aaPredicted RBP13.17□□□□□ -0.3
SS18-210ENST00000578700 USP16Q9Y5T5 823 aa13.17□□□□□ -0.3
SS18-210ENST00000578700 SCN4AP35499 1836 aa13.17□□□□□ -0.3
SS18-210ENST00000578700 SLX4Q8IY92 1834 aa13.17□□□□□ -0.3
SS18-210ENST00000578700 LTBP3Q9NS15 1303 aa13.16□□□□□ -0.3
SS18-210ENST00000578700 TMEM88BA6NKF7 163 aa13.16□□□□□ -0.3
SS18-210ENST00000578700 CTCFP49711 727 aaPredicted RBP13.16□□□□□ -0.3
SS18-210ENST00000578700 NCBP3Q53F19 620 aaKnown RBP13.16□□□□□ -0.3
SS18-210ENST00000578700 CCDC93Q567U6 631 aa13.16□□□□□ -0.3
SS18-210ENST00000578700 ZNF277Q9NRM2 450 aaPredicted RBP13.16□□□□□ -0.3
SS18-210ENST00000578700 CNTNAP1P78357 1384 aa13.16□□□□□ -0.3
SS18-210ENST00000578700 OLFM4Q6UX06 510 aa13.15□□□□□ -0.3
SS18-210ENST00000578700 BCORQ6W2J9 1755 aa13.15□□□□□ -0.31
SS18-210ENST00000578700 PRAMEF22A3QJZ6 481 aa13.14□□□□□ -0.31
SS18-210ENST00000578700 LBX1P52954 281 aa13.14□□□□□ -0.31
SS18-210ENST00000578700 PRDM10Q9NQV6 1147 aa13.14□□□□□ -0.31
SS18-210ENST00000578700 HACL1Q9UJ83 578 aa13.14□□□□□ -0.31
SS18-210ENST00000578700 COL3A1P02461 1466 aaPredicted RBP13.14□□□□□ -0.31
SS18-210ENST00000578700 PASKQ96RG2 1323 aa13.13□□□□□ -0.31
SS18-210ENST00000578700 ZNF541Q9H0D2 1346 aa13.13□□□□□ -0.31
SS18-210ENST00000578700 NPR1P16066 1061 aa13.13□□□□□ -0.31
SS18-210ENST00000578700 GTF2E1P29083 439 aaPredicted RBP13.13□□□□□ -0.31
SS18-210ENST00000578700 EPHX2P34913 555 aa13.13□□□□□ -0.31
SS18-210ENST00000578700 FKBP4Q02790 459 aaKnown RBP eCLIP13.13□□□□□ -0.31
SS18-210ENST00000578700 DEFB115Q30KQ5 88 aa13.13□□□□□ -0.31
SS18-210ENST00000578700 ERICH6BQ5W0A0 696 aa13.13□□□□□ -0.31
SS18-210ENST00000578700 MAP1SQ66K74 1059 aaPredicted RBP13.13□□□□□ -0.31
SS18-210ENST00000578700 NIP7Q9Y221 180 aaKnown RBP eCLIP13.13□□□□□ -0.31
SS18-210ENST00000578700 E9PSI1 815 aa13.12□□□□□ -0.31
SS18-210ENST00000578700 ITGBL1O95965 494 aaPredicted RBP13.12□□□□□ -0.31
SS18-210ENST00000578700 CCDC27Q2M243 656 aa13.12□□□□□ -0.31
SS18-210ENST00000578700 TPTE2Q6XPS3 522 aa13.12□□□□□ -0.31
SS18-210ENST00000578700 CNTROBQ8N137 903 aa13.12□□□□□ -0.31
SS18-210ENST00000578700 SYNE4Q8N205 404 aa13.12□□□□□ -0.31
SS18-210ENST00000578700 C7orf43Q8WVR3 580 aa13.12□□□□□ -0.31
SS18-210ENST00000578700 L3MBTL3Q96JM7 780 aaPredicted RBP13.12□□□□□ -0.31
SS18-210ENST00000578700 ABT1Q9ULW3 272 aaKnown RBP13.12□□□□□ -0.31
SS18-210ENST00000578700 ZNF652Q9Y2D9 606 aa13.12□□□□□ -0.31
SS18-210ENST00000578700 RNF123Q5XPI4 1314 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 105.4 ms