RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 ADAMTS7Q9UKP4 1686 aa13.22□□□□□ -0.29
SS18-207ENST00000577636 U2SURPO15042 1029 aaKnown RBP13.22□□□□□ -0.29
SS18-207ENST00000577636 NEFMP07197 916 aa13.22□□□□□ -0.29
SS18-207ENST00000577636 U2AF1L5P0DN76 240 aaPredicted RBP13.22□□□□□ -0.29
SS18-207ENST00000577636 U2AF1Q01081 240 aaKnown RBP eCLIP13.22□□□□□ -0.292e-6■■■■□ 21.7
SS18-207ENST00000577636 RUNDC1Q96C34 613 aa13.22□□□□□ -0.29
SS18-207ENST00000577636 ZNF496Q96IT1 587 aaPredicted RBP13.22□□□□□ -0.29
SS18-207ENST00000577636 PDZRN3Q9UPQ7 1066 aa13.22□□□□□ -0.29
SS18-207ENST00000577636 SCN11AQ9UI33 1791 aa13.22□□□□□ -0.29
SS18-207ENST00000577636 FOXN1O15353 648 aa13.21□□□□□ -0.29
SS18-207ENST00000577636 ST5P78524 1137 aa13.21□□□□□ -0.29
SS18-207ENST00000577636 EAPPQ56P03 285 aaPredicted RBP13.21□□□□□ -0.29
SS18-207ENST00000577636 CNBD1Q8NA66 436 aa13.21□□□□□ -0.29
SS18-207ENST00000577636 CNKSR1Q969H4 720 aa13.21□□□□□ -0.29
SS18-207ENST00000577636 CLEC11AQ9Y240 323 aa13.21□□□□□ -0.29
SS18-207ENST00000577636 CCDC88AQ3V6T2 1871 aa13.21□□□□□ -0.3
SS18-207ENST00000577636 PIP4K2AP48426 406 aaPredicted RBP13.2□□□□□ -0.3
SS18-207ENST00000577636 PRPF40BQ6NWY9 871 aaKnown RBP13.2□□□□□ -0.3
SS18-207ENST00000577636 ZNF790Q6PG37 636 aa13.2□□□□□ -0.3
SS18-207ENST00000577636 CCDC146Q8IYE0 955 aa13.2□□□□□ -0.3
SS18-207ENST00000577636 IL17REQ8NFR9 667 aa13.2□□□□□ -0.3
SS18-207ENST00000577636 TEX13AQ9BXU3 409 aaPredicted RBP13.2□□□□□ -0.3
SS18-207ENST00000577636 IL6STP40189 918 aaPredicted RBP13.19□□□□□ -0.3
SS18-207ENST00000577636 STYK1Q6J9G0 422 aa13.19□□□□□ -0.3
SS18-207ENST00000577636 DZIP3Q86Y13 1208 aaKnown RBP13.19□□□□□ -0.3
SS18-207ENST00000577636 AIDAQ96BJ3 306 aa13.19□□□□□ -0.3
SS18-207ENST00000577636 MASTLQ96GX5 879 aa13.19□□□□□ -0.3
SS18-207ENST00000577636 HEG1Q9ULI3 1381 aa13.19□□□□□ -0.3
SS18-207ENST00000577636 MAPK8IP3Q9UPT6 1336 aa13.18□□□□□ -0.3
SS18-207ENST00000577636 IQCA1LA6NCM1 817 aa13.18□□□□□ -0.3
SS18-207ENST00000577636 FAM177BA6PVY3 158 aa13.18□□□□□ -0.3
SS18-207ENST00000577636 GNAT3A8MTJ3 354 aa13.18□□□□□ -0.3
SS18-207ENST00000577636 APAF1O14727 1248 aa13.18□□□□□ -0.3
SS18-207ENST00000577636 KCNQ3O43525 872 aa13.18□□□□□ -0.3
SS18-207ENST00000577636 CAMTA2O94983 1202 aa13.18□□□□□ -0.3
SS18-207ENST00000577636 SRGNP10124 158 aa13.18□□□□□ -0.3
SS18-207ENST00000577636 FMNL2Q96PY5 1086 aa13.18□□□□□ -0.3
SS18-207ENST00000577636 SUPT16HQ9Y5B9 1047 aaKnown RBP13.18□□□□□ -0.3
SS18-207ENST00000577636 NRXN2Q9P2S2 1712 aa13.18□□□□□ -0.3
SS18-207ENST00000577636 TIAM2Q8IVF5 1701 aa13.17□□□□□ -0.3
SS18-207ENST00000577636 BTBD11A6QL63 1104 aa13.17□□□□□ -0.3
SS18-207ENST00000577636 VEGFBP49765 207 aa13.17□□□□□ -0.3
SS18-207ENST00000577636 GOLGA2Q08379 1002 aa13.17□□□□□ -0.3
SS18-207ENST00000577636 SOGA3Q5TF21 947 aa13.17□□□□□ -0.3
SS18-207ENST00000577636 LDHDQ86WU2 507 aa13.17□□□□□ -0.3
SS18-207ENST00000577636 NBPF5PQ86XG9 351 aaPredicted RBP13.17□□□□□ -0.3
SS18-207ENST00000577636 GAS2L2Q8NHY3 880 aa13.17□□□□□ -0.3
SS18-207ENST00000577636 TAF1DQ9H5J8 278 aaPredicted RBP13.17□□□□□ -0.3
SS18-207ENST00000577636 USP16Q9Y5T5 823 aa13.17□□□□□ -0.3
SS18-207ENST00000577636 MRC1P22897 1456 aa13.16□□□□□ -0.3
SS18-207ENST00000577636 LTBP3Q9NS15 1303 aa13.16□□□□□ -0.3
SS18-207ENST00000577636 TMEM88BA6NKF7 163 aa13.16□□□□□ -0.3
SS18-207ENST00000577636 CTCFP49711 727 aaPredicted RBP13.16□□□□□ -0.3
SS18-207ENST00000577636 NCBP3Q53F19 620 aaKnown RBP13.16□□□□□ -0.3
SS18-207ENST00000577636 CCDC93Q567U6 631 aa13.16□□□□□ -0.3
SS18-207ENST00000577636 ZNF277Q9NRM2 450 aaPredicted RBP13.16□□□□□ -0.3
SS18-207ENST00000577636 CNTNAP1P78357 1384 aa13.16□□□□□ -0.3
SS18-207ENST00000577636 OLFM4Q6UX06 510 aa13.15□□□□□ -0.3
SS18-207ENST00000577636 DLEC1Q9Y238 1755 aa13.15□□□□□ -0.31
SS18-207ENST00000577636 PRAMEF22A3QJZ6 481 aa13.14□□□□□ -0.31
SS18-207ENST00000577636 LBX1P52954 281 aa13.14□□□□□ -0.31
SS18-207ENST00000577636 PRDM10Q9NQV6 1147 aa13.14□□□□□ -0.31
SS18-207ENST00000577636 HACL1Q9UJ83 578 aa13.14□□□□□ -0.31
SS18-207ENST00000577636 COL3A1P02461 1466 aaPredicted RBP13.14□□□□□ -0.31
SS18-207ENST00000577636 PASKQ96RG2 1323 aa13.13□□□□□ -0.31
SS18-207ENST00000577636 ZNF541Q9H0D2 1346 aa13.13□□□□□ -0.31
SS18-207ENST00000577636 NPR1P16066 1061 aa13.13□□□□□ -0.31
SS18-207ENST00000577636 GTF2E1P29083 439 aaPredicted RBP13.13□□□□□ -0.31
SS18-207ENST00000577636 EPHX2P34913 555 aa13.13□□□□□ -0.31
SS18-207ENST00000577636 FKBP4Q02790 459 aaKnown RBP eCLIP13.13□□□□□ -0.31
SS18-207ENST00000577636 DEFB115Q30KQ5 88 aa13.13□□□□□ -0.31
SS18-207ENST00000577636 ERICH6BQ5W0A0 696 aa13.13□□□□□ -0.31
SS18-207ENST00000577636 MAP1SQ66K74 1059 aaPredicted RBP13.13□□□□□ -0.31
SS18-207ENST00000577636 NIP7Q9Y221 180 aaKnown RBP eCLIP13.13□□□□□ -0.31
SS18-207ENST00000577636 SLX4Q8IY92 1834 aa13.13□□□□□ -0.31
SS18-207ENST00000577636 ANKRD31Q8N7Z5 1873 aa13.12□□□□□ -0.31
SS18-207ENST00000577636 E9PSI1 815 aa13.12□□□□□ -0.31
SS18-207ENST00000577636 ITGBL1O95965 494 aaPredicted RBP13.12□□□□□ -0.31
SS18-207ENST00000577636 CCDC27Q2M243 656 aa13.12□□□□□ -0.31
SS18-207ENST00000577636 TPTE2Q6XPS3 522 aa13.12□□□□□ -0.31
SS18-207ENST00000577636 CNTROBQ8N137 903 aa13.12□□□□□ -0.31
SS18-207ENST00000577636 SYNE4Q8N205 404 aa13.12□□□□□ -0.31
SS18-207ENST00000577636 C7orf43Q8WVR3 580 aa13.12□□□□□ -0.31
SS18-207ENST00000577636 L3MBTL3Q96JM7 780 aaPredicted RBP13.12□□□□□ -0.31
SS18-207ENST00000577636 ABT1Q9ULW3 272 aaKnown RBP13.12□□□□□ -0.31
SS18-207ENST00000577636 ZNF652Q9Y2D9 606 aa13.12□□□□□ -0.31
SS18-207ENST00000577636 RNF123Q5XPI4 1314 aa13.12□□□□□ -0.31
SS18-207ENST00000577636 GRM1Q13255 1194 aa13.11□□□□□ -0.31
SS18-207ENST00000577636 NEUROD2Q15784 382 aa13.11□□□□□ -0.31
SS18-207ENST00000577636 CLEC4GQ6UXB4 293 aa13.11□□□□□ -0.31
SS18-207ENST00000577636 PAXIP1Q6ZW49 1069 aaPredicted RBP13.11□□□□□ -0.31
SS18-207ENST00000577636 RTKN2Q8IZC4 609 aa13.11□□□□□ -0.31
SS18-207ENST00000577636 RTF1Q92541 710 aaKnown RBP13.11□□□□□ -0.31
SS18-207ENST00000577636 PHACTR3Q96KR7 559 aa13.11□□□□□ -0.31
SS18-207ENST00000577636 WBP1LQ9NX94 342 aa13.11□□□□□ -0.31
SS18-207ENST00000577636 RCAN3Q9UKA8 241 aa13.11□□□□□ -0.31
SS18-207ENST00000577636 GJA3Q9Y6H8 435 aa13.11□□□□□ -0.31
SS18-207ENST00000577636 ZNF521Q96K83 1311 aa13.11□□□□□ -0.31
SS18-207ENST00000577636 FER1L6Q2WGJ9 1857 aa13.1□□□□□ -0.31
SS18-207ENST00000577636 PRKAR2BP31323 418 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 252.2 ms