RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 NRXN2Q9P2S2 1712 aa18.15■□□□□ 0.5
CCDC40-216ENST00000576241 H0YIN7 160 aa18.15■□□□□ 0.5
CCDC40-216ENST00000576241 NPHP1O15259 732 aa18.15■□□□□ 0.5
CCDC40-216ENST00000576241 POTEIP0CG38 1075 aa18.15■□□□□ 0.5
CCDC40-216ENST00000576241 POTEJP0CG39 1038 aa18.15■□□□□ 0.5
CCDC40-216ENST00000576241 RGS19P49795 217 aa18.15■□□□□ 0.5
CCDC40-216ENST00000576241 DZIP3Q86Y13 1208 aaKnown RBP18.15■□□□□ 0.5
CCDC40-216ENST00000576241 C2CD5Q86YS7 1000 aa18.15■□□□□ 0.5
CCDC40-216ENST00000576241 USP16Q9Y5T5 823 aa18.15■□□□□ 0.5
CCDC40-216ENST00000576241 SCN7AQ01118 1682 aa18.15■□□□□ 0.5
CCDC40-216ENST00000576241 CCDC85CA6NKD9 419 aa18.14■□□□□ 0.49
CCDC40-216ENST00000576241 TAF7Q15545 349 aaPredicted RBP18.14■□□□□ 0.49
CCDC40-216ENST00000576241 DPY19L2Q6NUT2 758 aa18.14■□□□□ 0.49
CCDC40-216ENST00000576241 TTLL6Q8N841 843 aa18.14■□□□□ 0.49
CCDC40-216ENST00000576241 SETDB2Q96T68 719 aa18.14■□□□□ 0.49
CCDC40-216ENST00000576241 PNNQ9H307 717 aaKnown RBP18.14■□□□□ 0.49
CCDC40-216ENST00000576241 CAMTA2O94983 1202 aa18.13■□□□□ 0.49
CCDC40-216ENST00000576241 HSPA8P11142 646 aaKnown RBP18.13■□□□□ 0.49
CCDC40-216ENST00000576241 AFDNP55196 1824 aaKnown RBP18.13■□□□□ 0.49
CCDC40-216ENST00000576241 PRAMEF22A3QJZ6 481 aa18.12■□□□□ 0.49
CCDC40-216ENST00000576241 PDE6BP35913 854 aa18.12■□□□□ 0.49
CCDC40-216ENST00000576241 PIP4K2AP48426 406 aaPredicted RBP18.12■□□□□ 0.49
CCDC40-216ENST00000576241 BRIP1Q9BX63 1249 aa18.12■□□□□ 0.49
CCDC40-216ENST00000576241 PDZRN3Q9UPQ7 1066 aa18.12■□□□□ 0.49
CCDC40-216ENST00000576241 MAPK8IP3Q9UPT6 1336 aa18.12■□□□□ 0.49
CCDC40-216ENST00000576241 NFKBIEO00221 500 aa18.11■□□□□ 0.49
CCDC40-216ENST00000576241 PRR5LQ6MZQ0 368 aa18.11■□□□□ 0.49
CCDC40-216ENST00000576241 CNBD1Q8NA66 436 aa18.11■□□□□ 0.49
CCDC40-216ENST00000576241 PNISRQ8TF01 805 aaKnown RBP18.11■□□□□ 0.49
CCDC40-216ENST00000576241 ZNF652Q9Y2D9 606 aa18.11■□□□□ 0.49
CCDC40-216ENST00000576241 PASKQ96RG2 1323 aa18.1■□□□□ 0.49
CCDC40-216ENST00000576241 ST5P78524 1137 aa18.1■□□□□ 0.49
CCDC40-216ENST00000576241 NFE2L2Q16236 605 aa18.1■□□□□ 0.49
CCDC40-216ENST00000576241 ZNF622Q969S3 477 aaKnown RBP eCLIP18.1■□□□□ 0.49
CCDC40-216ENST00000576241 PLEKHF1Q96S99 279 aa18.1■□□□□ 0.49
CCDC40-216ENST00000576241 RALBP1Q15311 655 aa18.09■□□□□ 0.49
CCDC40-216ENST00000576241 CLEC4GQ6UXB4 293 aa18.09■□□□□ 0.49
CCDC40-216ENST00000576241 MIS18AQ9NYP9 233 aa18.09■□□□□ 0.49
CCDC40-216ENST00000576241 CCDC24Q8N4L8 307 aa18.08■□□□□ 0.48
CCDC40-216ENST00000576241 DLEC1Q9Y238 1755 aa18.08■□□□□ 0.48
CCDC40-216ENST00000576241 TMEM88BA6NKF7 163 aa18.07■□□□□ 0.48
CCDC40-216ENST00000576241 NBPF5PQ86XG9 351 aaPredicted RBP18.07■□□□□ 0.48
CCDC40-216ENST00000576241 DICER1Q9UPY3 1922 aaKnown RBP18.07■□□□□ 0.48
CCDC40-216ENST00000576241 NBPF26B4DH59 902 aa18.06■□□□□ 0.48
CCDC40-216ENST00000576241 RGL2O15211 777 aa18.06■□□□□ 0.48
CCDC40-216ENST00000576241 ERFEQ4G0M1 354 aa18.06■□□□□ 0.48
CCDC40-216ENST00000576241 NBPF10Q6P3W6 841 aaKnown RBP18.06■□□□□ 0.48
CCDC40-216ENST00000576241 NBPF15Q8N660 670 aa18.06■□□□□ 0.48
CCDC40-216ENST00000576241 BCORQ6W2J9 1755 aa18.06■□□□□ 0.48
CCDC40-216ENST00000576241 DDNO94850 711 aaPredicted RBP18.05■□□□□ 0.48
CCDC40-216ENST00000576241 THUMPD2Q9BTF0 503 aaKnown RBP18.05■□□□□ 0.48
CCDC40-216ENST00000576241 DDX10Q13206 875 aaKnown RBP18.04■□□□□ 0.48
CCDC40-216ENST00000576241 NIP7Q9Y221 180 aaKnown RBP eCLIP18.04■□□□□ 0.48
CCDC40-216ENST00000576241 C21orf2O43822 256 aa18.03■□□□□ 0.48
CCDC40-216ENST00000576241 SRGNP10124 158 aa18.03■□□□□ 0.48
CCDC40-216ENST00000576241 EIF4A1P60842 406 aaKnown RBP18.03■□□□□ 0.48
CCDC40-216ENST00000576241 MAP2K1Q02750 393 aaPredicted RBP18.03■□□□□ 0.48
CCDC40-216ENST00000576241 STYK1Q6J9G0 422 aa18.03■□□□□ 0.48
CCDC40-216ENST00000576241 LDHDQ86WU2 507 aa18.03■□□□□ 0.48
CCDC40-216ENST00000576241 CNKSR1Q969H4 720 aa18.03■□□□□ 0.48
CCDC40-216ENST00000576241 ZNF219Q9P2Y4 722 aaPredicted RBP18.03■□□□□ 0.48
CCDC40-216ENST00000576241 ANKRD31Q8N7Z5 1873 aa18.03■□□□□ 0.48
CCDC40-216ENST00000576241 PDE4DIPQ5VU43 2346 aa18.03■□□□□ 0.48
CCDC40-216ENST00000576241 ITGBL1O95965 494 aaPredicted RBP18.02■□□□□ 0.48
CCDC40-216ENST00000576241 TPTE2Q6XPS3 522 aa18.02■□□□□ 0.48
CCDC40-216ENST00000576241 MASTLQ96GX5 879 aa18.02■□□□□ 0.48
CCDC40-216ENST00000576241 MYBBP1AQ9BQG0 1328 aaKnown RBP18.01■□□□□ 0.47
CCDC40-216ENST00000576241 TNRC18O15417 2968 aaPredicted RBP18.01■□□□□ 0.47
CCDC40-216ENST00000576241 RASSF10A6NK89 507 aa18.01■□□□□ 0.47
CCDC40-216ENST00000576241 LMOD3Q0VAK6 560 aa18.01■□□□□ 0.47
CCDC40-216ENST00000576241 DEFB115Q30KQ5 88 aa18.01■□□□□ 0.47
CCDC40-216ENST00000576241 PRPF40BQ6NWY9 871 aaKnown RBP18.01■□□□□ 0.47
CCDC40-216ENST00000576241 NGEFQ8N5V2 710 aa18.01■□□□□ 0.47
CCDC40-216ENST00000576241 CFAP44Q96MT7 982 aa18.01■□□□□ 0.47
CCDC40-216ENST00000576241 LAMB4A4D0S4 1761 aa18.01■□□□□ 0.47
CCDC40-216ENST00000576241 FER1L6Q2WGJ9 1857 aa18.01■□□□□ 0.47
CCDC40-216ENST00000576241 COL11A2P13942 1736 aaPredicted RBP18.01■□□□□ 0.47
CCDC40-216ENST00000576241 WDR33Q9C0J8 1336 aaKnown RBP18■□□□□ 0.47
CCDC40-216ENST00000576241 DLG5Q8TDM6 1919 aa18■□□□□ 0.47
CCDC40-216ENST00000576241 KDM3BQ7LBC6 1761 aa18■□□□□ 0.47
CCDC40-216ENST00000576241 RIPK4P57078 832 aa18■□□□□ 0.47
CCDC40-216ENST00000576241 SOGA3Q5TF21 947 aa18■□□□□ 0.47
CCDC40-216ENST00000576241 KIF6Q6ZMV9 814 aa18■□□□□ 0.47
CCDC40-216ENST00000576241 TSPYL4Q9UJ04 414 aa18■□□□□ 0.47
CCDC40-216ENST00000576241 RRP7AQ9Y3A4 280 aaKnown RBP18■□□□□ 0.47
CCDC40-216ENST00000576241 FAM177BA6PVY3 158 aa17.99■□□□□ 0.47
CCDC40-216ENST00000576241 MYL6BP14649 208 aa17.99■□□□□ 0.47
CCDC40-216ENST00000576241 GTF2E1P29083 439 aaPredicted RBP17.99■□□□□ 0.47
CCDC40-216ENST00000576241 HLFQ16534 295 aa17.99■□□□□ 0.47
CCDC40-216ENST00000576241 TAF1DQ9H5J8 278 aaPredicted RBP17.99■□□□□ 0.47
CCDC40-216ENST00000576241 IQCA1LA6NCM1 817 aa17.98■□□□□ 0.47
CCDC40-216ENST00000576241 ERVV-1B6SEH8 477 aa17.98■□□□□ 0.47
CCDC40-216ENST00000576241 NPR1P16066 1061 aa17.98■□□□□ 0.47
CCDC40-216ENST00000576241 TMPOP42166 694 aaKnown RBP17.98■□□□□ 0.47
CCDC40-216ENST00000576241 TAOK3Q9H2K8 898 aa17.98■□□□□ 0.47
CCDC40-216ENST00000576241 SCN4AP35499 1836 aa17.98■□□□□ 0.47
CCDC40-216ENST00000576241 MAP3K15Q6ZN16 1313 aa17.98■□□□□ 0.47
CCDC40-216ENST00000576241 LTBP3Q9NS15 1303 aa17.98■□□□□ 0.47
CCDC40-216ENST00000576241 WDR43Q15061 677 aaKnown RBP eCLIP17.97■□□□□ 0.47
CCDC40-216ENST00000576241 NYXQ9GZU5 481 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms