RNA–Protein interactions for RNA: ENST00000575815.5

NCBP3-205, Transcript of nuclear cap binding subunit 3, human

TSL 2

Gene NCBP3, Length 4,096 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NCBP3-205	ENST00000575815	HCLS1	P14317	486 aa	Predicted RBP	10.15	□□□□□ -0.79
NCBP3-205	ENST00000575815	NBPF5P	Q86XG9	351 aa	Predicted RBP	10.15	□□□□□ -0.79
NCBP3-205	ENST00000575815	UNC5CL	Q8IV45	518 aa		10.15	□□□□□ -0.79
NCBP3-205	ENST00000575815	DCTPP1	Q9H773	170 aa		10.14	□□□□□ -0.79
NCBP3-205	ENST00000575815	ABCF2	Q9UG63	623 aa		10.14	□□□□□ -0.79
NCBP3-205	ENST00000575815	RAB11FIP3	O75154	756 aa		10.14	□□□□□ -0.79
NCBP3-205	ENST00000575815	IDH1	O75874	414 aa	Known RBP	10.14	□□□□□ -0.79
NCBP3-205	ENST00000575815	NEK4	P51957	841 aa		10.14	□□□□□ -0.79
NCBP3-205	ENST00000575815	METTL22	Q9BUU2	404 aa	Predicted RBP	10.14	□□□□□ -0.79
NCBP3-205	ENST00000575815	RTCB	Q9Y3I0	505 aa	Known RBP	10.14	□□□□□ -0.79
NCBP3-205	ENST00000575815	ANKRD18B	A2A2Z9	1011 aa		10.14	□□□□□ -0.79
NCBP3-205	ENST00000575815	SMC5	Q8IY18	1101 aa		10.14	□□□□□ -0.79
NCBP3-205	ENST00000575815	PLBD2	Q8NHP8	589 aa		10.14	□□□□□ -0.79
NCBP3-205	ENST00000575815	TFCP2L1	Q9NZI6	479 aa		10.14	□□□□□ -0.79
NCBP3-205	ENST00000575815	MST1R	Q04912	1400 aa		10.14	□□□□□ -0.79
NCBP3-205	ENST00000575815	LRRC7	Q96NW7	1537 aa		10.14	□□□□□ -0.79
NCBP3-205	ENST00000575815	LRRFIP1	Q32MZ4	808 aa	Known RBP	10.13	□□□□□ -0.79
NCBP3-205	ENST00000575815	SETDB2	Q96T68	719 aa		10.13	□□□□□ -0.79
NCBP3-205	ENST00000575815	GZF1	Q9H116	711 aa	Predicted RBP	10.13	□□□□□ -0.79
NCBP3-205	ENST00000575815	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	10.13	□□□□□ -0.79
NCBP3-205	ENST00000575815	LOC102724428	A0A0B4J2F2	783 aa		10.13	□□□□□ -0.79
NCBP3-205	ENST00000575815	GLRX3	O76003	335 aa	Known RBP	10.13	□□□□□ -0.79
NCBP3-205	ENST00000575815	SIK1	P57059	783 aa		10.13	□□□□□ -0.79
NCBP3-205	ENST00000575815	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	10.13	□□□□□ -0.79
NCBP3-205	ENST00000575815	ZBTB1	Q9Y2K1	713 aa		10.13	□□□□□ -0.79
NCBP3-205	ENST00000575815	KCNQ2	O43526	872 aa		10.13	□□□□□ -0.79
NCBP3-205	ENST00000575815	SUCLG2	Q96I99	432 aa		10.13	□□□□□ -0.79
NCBP3-205	ENST00000575815	ZNF594	Q96JF6	807 aa	Predicted RBP	10.13	□□□□□ -0.79
NCBP3-205	ENST00000575815	IRS4	O14654	1257 aa	Predicted RBP	10.12	□□□□□ -0.79
NCBP3-205	ENST00000575815	CHAF1A	Q13111	956 aa	Predicted RBP	10.12	□□□□□ -0.79
NCBP3-205	ENST00000575815	GCKR	Q14397	625 aa		10.12	□□□□□ -0.79
NCBP3-205	ENST00000575815	TRPC5	Q9UL62	973 aa	Predicted RBP	10.12	□□□□□ -0.79
NCBP3-205	ENST00000575815	ECHDC1	Q9NTX5	307 aa		10.12	□□□□□ -0.79
NCBP3-205	ENST00000575815	ABCC4	O15439	1325 aa		10.12	□□□□□ -0.79
NCBP3-205	ENST00000575815	TRIM37	O94972	964 aa		10.12	□□□□□ -0.79
NCBP3-205	ENST00000575815	IFIT1	P09914	478 aa	Known RBP	10.12	□□□□□ -0.79
NCBP3-205	ENST00000575815	PDE1A	P54750	535 aa		10.12	□□□□□ -0.79
NCBP3-205	ENST00000575815	AFF2	P51816	1311 aa		10.11	□□□□□ -0.79
NCBP3-205	ENST00000575815	ANP32E	Q9BTT0	268 aa		10.11	□□□□□ -0.79
NCBP3-205	ENST00000575815	CCDC87	Q9NVE4	849 aa		10.11	□□□□□ -0.79
NCBP3-205	ENST00000575815	SOS1	Q07889	1333 aa	Predicted RBP	10.11	□□□□□ -0.79
NCBP3-205	ENST00000575815	SDS	P20132	328 aa		10.11	□□□□□ -0.79
NCBP3-205	ENST00000575815	TIMM10	P62072	90 aa		10.11	□□□□□ -0.79
NCBP3-205	ENST00000575815	RNF20	Q5VTR2	975 aa		10.11	□□□□□ -0.79
NCBP3-205	ENST00000575815	TBC1D9	Q6ZT07	1266 aa		10.11	□□□□□ -0.79
NCBP3-205	ENST00000575815	SEPT12	Q8IYM1	358 aa		10.11	□□□□□ -0.79
NCBP3-205	ENST00000575815	UPF3B	Q9BZI7	483 aa	Known RBP	10.11	□□□□□ -0.79
NCBP3-205	ENST00000575815	ANKIB1	Q9P2G1	1089 aa		10.11	□□□□□ -0.79
NCBP3-205	ENST00000575815	BEND3	Q5T5X7	828 aa		10.11	□□□□□ -0.79
NCBP3-205	ENST00000575815	NEURL1B	A8MQ27	555 aa		10.1	□□□□□ -0.79
NCBP3-205	ENST00000575815	GOLIM4	O00461	696 aa		10.1	□□□□□ -0.79
NCBP3-205	ENST00000575815	DDX46	Q7L014	1031 aa	Known RBP	10.1	□□□□□ -0.79
NCBP3-205	ENST00000575815	UTP14A	Q9BVJ6	771 aa	Known RBP	10.1	□□□□□ -0.79
NCBP3-205	ENST00000575815	LRP2BP	Q9P2M1	347 aa		10.1	□□□□□ -0.79
NCBP3-205	ENST00000575815	SEC24B	O95487	1268 aa		10.1	□□□□□ -0.79
NCBP3-205	ENST00000575815	APBA3	O96018	575 aa		10.1	□□□□□ -0.79
NCBP3-205	ENST00000575815	SMIM5	Q71RC9	77 aa		10.1	□□□□□ -0.79
NCBP3-205	ENST00000575815	MAP2	P11137	1827 aa	Known RBP	10.1	□□□□□ -0.79
NCBP3-205	ENST00000575815	KDM4A	O75164	1064 aa		10.09	□□□□□ -0.79
NCBP3-205	ENST00000575815	TRAPPC3L	Q5T215	181 aa		10.09	□□□□□ -0.79
NCBP3-205	ENST00000575815	RAD21	O60216	631 aa		10.09	□□□□□ -0.79
NCBP3-205	ENST00000575815	FOSB	P53539	338 aa		10.09	□□□□□ -0.79
NCBP3-205	ENST00000575815	TRDN	Q13061	729 aa		10.09	□□□□□ -0.79
NCBP3-205	ENST00000575815	BMP2KL	Q5H9B9	411 aa		10.09	□□□□□ -0.79
NCBP3-205	ENST00000575815	TTC22	Q5TAA0	569 aa		10.09	□□□□□ -0.79
NCBP3-205	ENST00000575815	PLEKHM2	Q8IWE5	1019 aa		10.09	□□□□□ -0.79
NCBP3-205	ENST00000575815	NLRP3	Q96P20	1036 aa		10.09	□□□□□ -0.79
NCBP3-205	ENST00000575815	NOL10	Q9BSC4	688 aa	Known RBP	10.09	□□□□□ -0.79
NCBP3-205	ENST00000575815	RAI14	Q9P0K7	980 aa		10.09	□□□□□ -0.79
NCBP3-205	ENST00000575815	MTMR7	Q9Y216	660 aa		10.09	□□□□□ -0.79
NCBP3-205	ENST00000575815	AKAP2	Q9Y2D5	859 aa		10.09	□□□□□ -0.79
NCBP3-205	ENST00000575815	KDR	P35968	1356 aa		10.09	□□□□□ -0.79
NCBP3-205	ENST00000575815	POLR1A	O95602	1720 aa	Predicted RBP	10.09	□□□□□ -0.79
NCBP3-205	ENST00000575815	GOLGA6L4	A6NEF3	574 aa		10.09	□□□□□ -0.79
NCBP3-205	ENST00000575815	TFCP2	Q12800	502 aa		10.09	□□□□□ -0.79
NCBP3-205	ENST00000575815	GNL2	Q13823	731 aa	Known RBP	10.09	□□□□□ -0.79
NCBP3-205	ENST00000575815	RRP12	Q5JTH9	1297 aa	Known RBP	10.09	□□□□□ -0.79
NCBP3-205	ENST00000575815	CHMP4C	Q96CF2	233 aa		10.09	□□□□□ -0.79
NCBP3-205	ENST00000575815	ATG3	Q9NT62	314 aa		10.09	□□□□□ -0.79
NCBP3-205	ENST00000575815	NDUFB9	Q9Y6M9	179 aa		10.09	□□□□□ -0.79
NCBP3-205	ENST00000575815	KDM2B	Q8NHM5	1336 aa		10.09	□□□□□ -0.79
NCBP3-205	ENST00000575815	RPGR	Q92834	1020 aa	Known RBP	10.08	□□□□□ -0.8
NCBP3-205	ENST00000575815	GNL3L	Q9NVN8	582 aa	Known RBP	10.08	□□□□□ -0.8
NCBP3-205	ENST00000575815	CRKL	P46109	303 aa	Known RBP	10.08	□□□□□ -0.8
NCBP3-205	ENST00000575815	TCIRG1	Q13488	830 aa		10.08	□□□□□ -0.8
NCBP3-205	ENST00000575815	CCDC191	Q8NCU4	936 aa		10.08	□□□□□ -0.8
NCBP3-205	ENST00000575815	LARP6	Q9BRS8	491 aa	Known RBP	10.08	□□□□□ -0.8
NCBP3-205	ENST00000575815	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	10.08	□□□□□ -0.8
NCBP3-205	ENST00000575815	TPTE2	Q6XPS3	522 aa		10.08	□□□□□ -0.8
NCBP3-205	ENST00000575815	ANP32B	Q92688	251 aa	Known RBP	10.08	□□□□□ -0.8
NCBP3-205	ENST00000575815	C6orf229	H3BNL8	230 aa		10.07	□□□□□ -0.8
NCBP3-205	ENST00000575815	RALYL	Q86SE5	291 aa	Known RBP	10.07	□□□□□ -0.8
NCBP3-205	ENST00000575815	ZNF622	Q969S3	477 aa	Known RBP eCLIP	10.07	□□□□□ -0.8	1e-6	■■□□□ 11.9
NCBP3-205	ENST00000575815	SH3TC1	Q8TE82	1336 aa		10.07	□□□□□ -0.8
NCBP3-205	ENST00000575815	CCDC152	Q4G0S7	254 aa		10.07	□□□□□ -0.8
NCBP3-205	ENST00000575815	CDC5L	Q99459	802 aa	Known RBP	10.07	□□□□□ -0.8
NCBP3-205	ENST00000575815	ATP2B3	Q16720	1220 aa		10.07	□□□□□ -0.8
NCBP3-205	ENST00000575815	SIRT2	Q8IXJ6	389 aa		10.07	□□□□□ -0.8
NCBP3-205	ENST00000575815	HIP1	O00291	1037 aa		10.06	□□□□□ -0.8
NCBP3-205	ENST00000575815	C8orf34	Q49A92	452 aa		10.06	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 12 ms