RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 IP6K1Q92551 441 aa11.47□□□□□ -0.57
CCDC40-212ENST00000574799 UPF3BQ9BZI7 483 aaKnown RBP11.47□□□□□ -0.57
CCDC40-212ENST00000574799 UVSSAQ2YD98 709 aa11.46□□□□□ -0.57
CCDC40-212ENST00000574799 ESCO1Q5FWF5 840 aa11.46□□□□□ -0.57
CCDC40-212ENST00000574799 CCDC183Q5T5S1 534 aa11.46□□□□□ -0.57
CCDC40-212ENST00000574799 USP26Q9BXU7 913 aa11.46□□□□□ -0.57
CCDC40-212ENST00000574799 SMARCA5O60264 1052 aaPredicted RBP11.46□□□□□ -0.58
CCDC40-212ENST00000574799 DDX17Q92841 729 aaKnown RBP11.46□□□□□ -0.58
CCDC40-212ENST00000574799 GADD45BO75293 160 aaPredicted RBP11.45□□□□□ -0.58
CCDC40-212ENST00000574799 TNNT1P13805 278 aa11.45□□□□□ -0.58
CCDC40-212ENST00000574799 LMOD3Q0VAK6 560 aa11.45□□□□□ -0.58
CCDC40-212ENST00000574799 GIMAP6Q6P9H5 292 aa11.45□□□□□ -0.58
CCDC40-212ENST00000574799 USP48Q86UV5 1035 aa11.45□□□□□ -0.58
CCDC40-212ENST00000574799 ARHGEF25Q86VW2 580 aa11.45□□□□□ -0.58
CCDC40-212ENST00000574799 IPO4Q8TEX9 1081 aaKnown RBP11.45□□□□□ -0.58
CCDC40-212ENST00000574799 TRIM5Q9C035 493 aa11.45□□□□□ -0.58
CCDC40-212ENST00000574799 FKBP5Q13451 457 aaPredicted RBP11.45□□□□□ -0.58
CCDC40-212ENST00000574799 LRRC59Q96AG4 307 aaKnown RBP11.45□□□□□ -0.58
CCDC40-212ENST00000574799 MAP3K5Q99683 1374 aa11.45□□□□□ -0.58
CCDC40-212ENST00000574799 WDR33Q9C0J8 1336 aaKnown RBP11.45□□□□□ -0.58
CCDC40-212ENST00000574799 MCM2P49736 904 aa11.44□□□□□ -0.58
CCDC40-212ENST00000574799 TTC22Q5TAA0 569 aa11.44□□□□□ -0.58
CCDC40-212ENST00000574799 DCCP43146 1447 aa11.44□□□□□ -0.58
CCDC40-212ENST00000574799 AMPHP49418 695 aa11.44□□□□□ -0.58
CCDC40-212ENST00000574799 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.44□□□□□ -0.58
CCDC40-212ENST00000574799 V9GYY5 206 aaPredicted RBP11.44□□□□□ -0.58
CCDC40-212ENST00000574799 RTF1Q92541 710 aaKnown RBP11.44□□□□□ -0.58
CCDC40-212ENST00000574799 CALCOCO1Q9P1Z2 691 aa11.44□□□□□ -0.58
CCDC40-212ENST00000574799 ABCC6O95255 1503 aa11.43□□□□□ -0.58
CCDC40-212ENST00000574799 PARP4Q9UKK3 1724 aaKnown RBP11.43□□□□□ -0.58
CCDC40-212ENST00000574799 SDSP20132 328 aa11.43□□□□□ -0.58
CCDC40-212ENST00000574799 TMEM51Q9NW97 253 aa11.43□□□□□ -0.58
CCDC40-212ENST00000574799 ATP6V1DQ9Y5K8 247 aa11.43□□□□□ -0.58
CCDC40-212ENST00000574799 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.43□□□□□ -0.58
CCDC40-212ENST00000574799 KRT222Q8N1A0 295 aa11.43□□□□□ -0.58
CCDC40-212ENST00000574799 API5Q9BZZ5 524 aaKnown RBP11.43□□□□□ -0.58
CCDC40-212ENST00000574799 LGR6Q9HBX8 967 aa11.43□□□□□ -0.58
CCDC40-212ENST00000574799 TMEM94Q12767 1356 aa11.43□□□□□ -0.58
CCDC40-212ENST00000574799 HEG1Q9ULI3 1381 aa11.43□□□□□ -0.58
CCDC40-212ENST00000574799 KDM4AO75164 1064 aa11.43□□□□□ -0.58
CCDC40-212ENST00000574799 GSPT1P15170 499 aaKnown RBP11.43□□□□□ -0.58
CCDC40-212ENST00000574799 PLEKHM2Q8IWE5 1019 aa11.43□□□□□ -0.58
CCDC40-212ENST00000574799 PYCARDQ9ULZ3 195 aa11.43□□□□□ -0.58
CCDC40-212ENST00000574799 VPS37CA5D8V6 355 aaPredicted RBP11.42□□□□□ -0.58
CCDC40-212ENST00000574799 GCP02774 474 aa11.42□□□□□ -0.58
CCDC40-212ENST00000574799 GABPB1Q06547 395 aaPredicted RBP11.42□□□□□ -0.58
CCDC40-212ENST00000574799 SLC4A10Q6U841 1118 aa11.42□□□□□ -0.58
CCDC40-212ENST00000574799 PAXIP1Q6ZW49 1069 aaPredicted RBP11.42□□□□□ -0.58
CCDC40-212ENST00000574799 UBR2Q8IWV8 1755 aa11.42□□□□□ -0.58
CCDC40-212ENST00000574799 PTGS1P23219 599 aa11.42□□□□□ -0.58
CCDC40-212ENST00000574799 DNAJC2Q99543 621 aaKnown RBP11.42□□□□□ -0.58
CCDC40-212ENST00000574799 ZDHHC9Q9Y397 364 aa11.42□□□□□ -0.58
CCDC40-212ENST00000574799 PAPPAQ13219 1627 aa11.42□□□□□ -0.58
CCDC40-212ENST00000574799 HTATSF1O43719 755 aaKnown RBP11.42□□□□□ -0.58
CCDC40-212ENST00000574799 CCDC192P0DO97 292 aa11.42□□□□□ -0.58
CCDC40-212ENST00000574799 OTUD7AQ8TE49 926 aaPredicted RBP11.42□□□□□ -0.58
CCDC40-212ENST00000574799 TRIM34Q9BYJ4 488 aa11.42□□□□□ -0.58
CCDC40-212ENST00000574799 NHSL1Q5SYE7 1610 aa11.41□□□□□ -0.58
CCDC40-212ENST00000574799 SMC3Q9UQE7 1217 aa11.41□□□□□ -0.58
CCDC40-212ENST00000574799 CNPY2Q9Y2B0 182 aa11.41□□□□□ -0.58
CCDC40-212ENST00000574799 MEGF6O75095 1541 aa11.41□□□□□ -0.58
CCDC40-212ENST00000574799 KDM4FA0A1W2PPD8 638 aa11.41□□□□□ -0.58
CCDC40-212ENST00000574799 HMMRO75330 724 aa11.41□□□□□ -0.58
CCDC40-212ENST00000574799 TOGARAM1Q9Y4F4 1720 aa11.41□□□□□ -0.58
CCDC40-212ENST00000574799 GNAT3A8MTJ3 354 aa11.41□□□□□ -0.58
CCDC40-212ENST00000574799 KCNQ3O43525 872 aa11.41□□□□□ -0.58
CCDC40-212ENST00000574799 CYP2E1P05181 493 aaPredicted RBP11.41□□□□□ -0.58
CCDC40-212ENST00000574799 CCDC186Q7Z3E2 898 aa11.41□□□□□ -0.58
CCDC40-212ENST00000574799 MX1P20591 662 aa11.4□□□□□ -0.58
CCDC40-212ENST00000574799 LTV1Q96GA3 475 aaPredicted RBP11.4□□□□□ -0.58
CCDC40-212ENST00000574799 LARP6Q9BRS8 491 aaKnown RBP11.4□□□□□ -0.58
CCDC40-212ENST00000574799 GTF2F1P35269 517 aaKnown RBP eCLIP11.4□□□□□ -0.58
CCDC40-212ENST00000574799 CAMK4Q16566 473 aa11.4□□□□□ -0.58
CCDC40-212ENST00000574799 KDM6AO15550 1401 aaPredicted RBP11.4□□□□□ -0.58
CCDC40-212ENST00000574799 MRC1P22897 1456 aa11.4□□□□□ -0.58
CCDC40-212ENST00000574799 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.4□□□□□ -0.59
CCDC40-212ENST00000574799 MEIS3Q99687 375 aa11.4□□□□□ -0.59
CCDC40-212ENST00000574799 AK9Q5TCS8 1911 aa11.4□□□□□ -0.59
CCDC40-212ENST00000574799 PXDNLA1KZ92 1463 aa11.39□□□□□ -0.59
CCDC40-212ENST00000574799 TAF7LQ5H9L4 462 aa11.39□□□□□ -0.59
CCDC40-212ENST00000574799 OVOS2A0A0G2JMS6 1433 aa11.39□□□□□ -0.59
CCDC40-212ENST00000574799 GOLGA6L19H0YKK7 550 aa11.39□□□□□ -0.59
CCDC40-212ENST00000574799 BRD1O95696 1058 aa11.39□□□□□ -0.59
CCDC40-212ENST00000574799 PSME1Q06323 249 aa11.39□□□□□ -0.59
CCDC40-212ENST00000574799 CERS3Q8IU89 383 aa11.39□□□□□ -0.59
CCDC40-212ENST00000574799 F6X3S4 739 aa11.39□□□□□ -0.59
CCDC40-212ENST00000574799 TEX35Q5T0J7 233 aa11.39□□□□□ -0.59
CCDC40-212ENST00000574799 TSHZ3Q63HK5 1081 aa11.39□□□□□ -0.59
CCDC40-212ENST00000574799 CEP85Q6P2H3 762 aa11.39□□□□□ -0.59
CCDC40-212ENST00000574799 KIAA1524Q8TCG1 905 aa11.39□□□□□ -0.59
CCDC40-212ENST00000574799 C19orf44Q9H6X5 657 aa11.39□□□□□ -0.59
CCDC40-212ENST00000574799 PTPRCP08575 1304 aa11.38□□□□□ -0.59
CCDC40-212ENST00000574799 HSPA2P54652 639 aa11.38□□□□□ -0.59
CCDC40-212ENST00000574799 NAA30Q147X3 362 aaPredicted RBP11.38□□□□□ -0.59
CCDC40-212ENST00000574799 SLC4A2P04920 1241 aa11.38□□□□□ -0.59
CCDC40-212ENST00000574799 IRX5P78411 483 aaPredicted RBP11.38□□□□□ -0.59
CCDC40-212ENST00000574799 TSPYL4Q9UJ04 414 aa11.38□□□□□ -0.59
CCDC40-212ENST00000574799 LAMB4A4D0S4 1761 aa11.38□□□□□ -0.59
CCDC40-212ENST00000574799 SMTNL1A8MU46 457 aa11.38□□□□□ -0.59
CCDC40-212ENST00000574799 UBE2HP62256 183 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms