RNA–Protein interactions for RNA: ENST00000573903.1

CCDC40-210, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 561 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-210ENST00000573903 USP16Q9Y5T5 823 aa16.2■□□□□ 0.18
CCDC40-210ENST00000573903 FER1L6Q2WGJ9 1857 aa16.2■□□□□ 0.18
CCDC40-210ENST00000573903 DICER1Q9UPY3 1922 aaKnown RBP16.19■□□□□ 0.18
CCDC40-210ENST00000573903 LAMB4A4D0S4 1761 aa16.19■□□□□ 0.18
CCDC40-210ENST00000573903 ARFGEF2Q9Y6D5 1785 aa16.19■□□□□ 0.18
CCDC40-210ENST00000573903 SOGA3Q5TF21 947 aa16.19■□□□□ 0.18
CCDC40-210ENST00000573903 CLEC4GQ6UXB4 293 aa16.19■□□□□ 0.18
CCDC40-210ENST00000573903 PIP4K2AP48426 406 aaPredicted RBP16.18■□□□□ 0.18
CCDC40-210ENST00000573903 STYK1Q6J9G0 422 aa16.18■□□□□ 0.18
CCDC40-210ENST00000573903 NBPF5PQ86XG9 351 aaPredicted RBP16.18■□□□□ 0.18
CCDC40-210ENST00000573903 PRAMEF22A3QJZ6 481 aa16.17■□□□□ 0.18
CCDC40-210ENST00000573903 PRELPP51888 382 aa16.17■□□□□ 0.18
CCDC40-210ENST00000573903 DCTN1Q14203 1278 aa16.17■□□□□ 0.18
CCDC40-210ENST00000573903 ERFEQ4G0M1 354 aa16.17■□□□□ 0.18
CCDC40-210ENST00000573903 DNAJC5GQ8N7S2 189 aa16.17■□□□□ 0.18
CCDC40-210ENST00000573903 MASTLQ96GX5 879 aa16.17■□□□□ 0.18
CCDC40-210ENST00000573903 TAOK3Q9H2K8 898 aa16.17■□□□□ 0.18
CCDC40-210ENST00000573903 DLG5Q8TDM6 1919 aa16.16■□□□□ 0.18
CCDC40-210ENST00000573903 SRGNP10124 158 aa16.16■□□□□ 0.18
CCDC40-210ENST00000573903 TAF7Q15545 349 aaPredicted RBP16.16■□□□□ 0.18
CCDC40-210ENST00000573903 PRPF40BQ6NWY9 871 aaKnown RBP16.16■□□□□ 0.18
CCDC40-210ENST00000573903 KLRG1Q96E93 195 aa16.16■□□□□ 0.18
CCDC40-210ENST00000573903 LTBP3Q9NS15 1303 aa16.16■□□□□ 0.18
CCDC40-210ENST00000573903 SLX4Q8IY92 1834 aa16.15■□□□□ 0.18
CCDC40-210ENST00000573903 RGL2O15211 777 aa16.15■□□□□ 0.18
CCDC40-210ENST00000573903 PNISRQ8TF01 805 aaKnown RBP16.15■□□□□ 0.18
CCDC40-210ENST00000573903 NIP7Q9Y221 180 aaKnown RBP eCLIP16.15■□□□□ 0.18
CCDC40-210ENST00000573903 HTRA3P83110 453 aa16.14■□□□□ 0.17
CCDC40-210ENST00000573903 TPTE2Q6XPS3 522 aa16.14■□□□□ 0.17
CCDC40-210ENST00000573903 PNNQ9H307 717 aaKnown RBP16.14■□□□□ 0.17
CCDC40-210ENST00000573903 KDM3BQ7LBC6 1761 aa16.13■□□□□ 0.17
CCDC40-210ENST00000573903 NPR1P16066 1061 aa16.13■□□□□ 0.17
CCDC40-210ENST00000573903 GTF2E1P29083 439 aaPredicted RBP16.13■□□□□ 0.17
CCDC40-210ENST00000573903 ZEB1P37275 1124 aaPredicted RBP16.13■□□□□ 0.17
CCDC40-210ENST00000573903 MAPK8IP3Q9UPT6 1336 aa16.13■□□□□ 0.17
CCDC40-210ENST00000573903 CCDC93Q567U6 631 aa16.12■□□□□ 0.17
CCDC40-210ENST00000573903 FAM177BA6PVY3 158 aa16.11■□□□□ 0.17
CCDC40-210ENST00000573903 NBPF26B4DH59 902 aa16.11■□□□□ 0.17
CCDC40-210ENST00000573903 NBPF10Q6P3W6 841 aaKnown RBP16.11■□□□□ 0.17
CCDC40-210ENST00000573903 NBPF15Q8N660 670 aa16.11■□□□□ 0.17
CCDC40-210ENST00000573903 MIS18AQ9NYP9 233 aa16.11■□□□□ 0.17
CCDC40-210ENST00000573903 KIF6Q6ZMV9 814 aa16.1■□□□□ 0.17
CCDC40-210ENST00000573903 JMYQ8N9B5 988 aa16.1■□□□□ 0.17
CCDC40-210ENST00000573903 NFE2L2Q16236 605 aa16.09■□□□□ 0.17
CCDC40-210ENST00000573903 NGEFQ8N5V2 710 aa16.09■□□□□ 0.17
CCDC40-210ENST00000573903 NYXQ9GZU5 481 aa16.09■□□□□ 0.17
CCDC40-210ENST00000573903 NUP98P52948 1817 aa16.08■□□□□ 0.17
CCDC40-210ENST00000573903 IQCA1LA6NCM1 817 aa16.08■□□□□ 0.16
CCDC40-210ENST00000573903 ALDH1B1P30837 517 aa16.08■□□□□ 0.16
CCDC40-210ENST00000573903 KLRG2A4D1S0 409 aaPredicted RBP16.07■□□□□ 0.16
CCDC40-210ENST00000573903 POTECB2RU33 542 aa16.07■□□□□ 0.16
CCDC40-210ENST00000573903 ERVV-1B6SEH8 477 aa16.07■□□□□ 0.16
CCDC40-210ENST00000573903 DDNO94850 711 aaPredicted RBP16.07■□□□□ 0.16
CCDC40-210ENST00000573903 FKBP4Q02790 459 aaKnown RBP eCLIP16.07■□□□□ 0.16
CCDC40-210ENST00000573903 HLFQ16534 295 aa16.07■□□□□ 0.16
CCDC40-210ENST00000573903 RTKN2Q8IZC4 609 aa16.07■□□□□ 0.16
CCDC40-210ENST00000573903 RRP7AQ9Y3A4 280 aaKnown RBP16.07■□□□□ 0.16
CCDC40-210ENST00000573903 SCN4AP35499 1836 aa16.07■□□□□ 0.16
CCDC40-210ENST00000573903 MAP3K15Q6ZN16 1313 aa16.06■□□□□ 0.16
CCDC40-210ENST00000573903 MYL6BP14649 208 aa16.06■□□□□ 0.16
CCDC40-210ENST00000573903 EIF4A1P60842 406 aaKnown RBP16.06■□□□□ 0.16
CCDC40-210ENST00000573903 CHADLQ6NUI6 762 aa16.06■□□□□ 0.16
CCDC40-210ENST00000573903 PLEKHF1Q96S99 279 aa16.06■□□□□ 0.16
CCDC40-210ENST00000573903 C7orf43Q8WVR3 580 aa16.05■□□□□ 0.16
CCDC40-210ENST00000573903 IBTKQ9P2D0 1353 aaPredicted RBP16.04■□□□□ 0.16
CCDC40-210ENST00000573903 ERBB4Q15303 1308 aa16.04■□□□□ 0.16
CCDC40-210ENST00000573903 RPGRQ92834 1020 aaKnown RBP16.04■□□□□ 0.16
CCDC40-210ENST00000573903 THUMPD2Q9BTF0 503 aaKnown RBP16.04■□□□□ 0.16
CCDC40-210ENST00000573903 ZNF277Q9NRM2 450 aaPredicted RBP16.04■□□□□ 0.16
CCDC40-210ENST00000573903 TSPYL4Q9UJ04 414 aa16.04■□□□□ 0.16
CCDC40-210ENST00000573903 NUTM1Q86Y26 1132 aa16.03■□□□□ 0.16
CCDC40-210ENST00000573903 ZBTB3Q9H5J0 574 aa16.03■□□□□ 0.16
CCDC40-210ENST00000573903 RIC1Q4ADV7 1423 aa16.02■□□□□ 0.16
CCDC40-210ENST00000573903 ABCC12Q96J65 1359 aa16.02■□□□□ 0.16
CCDC40-210ENST00000573903 GPTP24298 496 aa16.02■□□□□ 0.16
CCDC40-210ENST00000573903 IARSP41252 1262 aaKnown RBP16.02■□□□□ 0.16
CCDC40-210ENST00000573903 LMOD3Q0VAK6 560 aa16.02■□□□□ 0.16
CCDC40-210ENST00000573903 TTLL7Q6ZT98 887 aa16.02■□□□□ 0.16
CCDC40-210ENST00000573903 LDHDQ86WU2 507 aa16.02■□□□□ 0.16
CCDC40-210ENST00000573903 L3MBTL3Q96JM7 780 aaPredicted RBP16.02■□□□□ 0.16
CCDC40-210ENST00000573903 RALBP1Q15311 655 aa16.01■□□□□ 0.15
CCDC40-210ENST00000573903 CRY2Q49AN0 593 aa16.01■□□□□ 0.15
CCDC40-210ENST00000573903 CC2D2BQ6DHV5 1058 aa16.01■□□□□ 0.15
CCDC40-210ENST00000573903 OLFM4Q6UX06 510 aa16.01■□□□□ 0.15
CCDC40-210ENST00000573903 SYNE4Q8N205 404 aa16.01■□□□□ 0.15
CCDC40-210ENST00000573903 JDP2Q8WYK2 163 aa16.01■□□□□ 0.15
CCDC40-210ENST00000573903 CREBZFQ9NS37 354 aa16.01■□□□□ 0.15
CCDC40-210ENST00000573903 HACL1Q9UJ83 578 aa16.01■□□□□ 0.15
CCDC40-210ENST00000573903 ZNF541Q9H0D2 1346 aa16■□□□□ 0.15
CCDC40-210ENST00000573903 POTEIP0CG38 1075 aa16■□□□□ 0.15
CCDC40-210ENST00000573903 POTEJP0CG39 1038 aa16■□□□□ 0.15
CCDC40-210ENST00000573903 RIPK4P57078 832 aa16■□□□□ 0.15
CCDC40-210ENST00000573903 GRIPAP1Q4V328 841 aa16■□□□□ 0.15
CCDC40-210ENST00000573903 EAPPQ56P03 285 aaPredicted RBP16■□□□□ 0.15
CCDC40-210ENST00000573903 GIGYF2Q6Y7W6 1299 aaKnown RBP16■□□□□ 0.15
CCDC40-210ENST00000573903 PPP1R42Q7Z4L9 355 aa16■□□□□ 0.15
CCDC40-210ENST00000573903 RBM17Q96I25 401 aaKnown RBP16■□□□□ 0.15
CCDC40-210ENST00000573903 PSMD1Q99460 953 aa16■□□□□ 0.15
CCDC40-210ENST00000573903 TMX4Q9H1E5 349 aaPredicted RBP16■□□□□ 0.15
CCDC40-210ENST00000573903 TAF1DQ9H5J8 278 aaPredicted RBP16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms