RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 XAGE2Q96GT9 111 aa8.89□□□□□ -0.99
VPS53-212ENST00000572259 TSEN34Q9BSV6 310 aaKnown RBP8.89□□□□□ -0.99
VPS53-212ENST00000572259 SCAPERQ9BY12 1400 aa8.88□□□□□ -0.99
VPS53-212ENST00000572259 CCNB3Q8WWL7 1395 aa8.88□□□□□ -0.99
VPS53-212ENST00000572259 PRMT3O60678 531 aa8.88□□□□□ -0.99
VPS53-212ENST00000572259 LGR5O75473 907 aa8.88□□□□□ -0.99
VPS53-212ENST00000572259 DGAT1O75907 488 aa8.88□□□□□ -0.99
VPS53-212ENST00000572259 ATP2B4P23634 1241 aa8.88□□□□□ -0.99
VPS53-212ENST00000572259 MEIOBQ8N635 442 aa8.88□□□□□ -0.99
VPS53-212ENST00000572259 PRIMPOLQ96LW4 560 aa8.88□□□□□ -0.99
VPS53-212ENST00000572259 ESYT1Q9BSJ8 1104 aa8.88□□□□□ -0.99
VPS53-212ENST00000572259 CFDP1Q9UEE9 299 aaPredicted RBP8.88□□□□□ -0.99
VPS53-212ENST00000572259 ADGRL1O94910 1474 aa8.88□□□□□ -0.99
VPS53-212ENST00000572259 NRG2O14511 850 aaPredicted RBP8.87□□□□□ -0.99
VPS53-212ENST00000572259 IL2RAP01589 272 aa8.87□□□□□ -0.99
VPS53-212ENST00000572259 GTF2E1P29083 439 aaPredicted RBP8.87□□□□□ -0.99
VPS53-212ENST00000572259 SMTNP53814 917 aa8.87□□□□□ -0.99
VPS53-212ENST00000572259 CLN3Q13286 438 aa8.87□□□□□ -0.99
VPS53-212ENST00000572259 LAPTM4AQ15012 233 aa8.87□□□□□ -0.99
VPS53-212ENST00000572259 TNS4Q8IZW8 715 aa8.87□□□□□ -0.99
VPS53-212ENST00000572259 KDF1Q8NAX2 398 aaPredicted RBP8.87□□□□□ -0.99
VPS53-212ENST00000572259 ARID4BQ4LE39 1312 aaPredicted RBP8.86□□□□□ -0.99
VPS53-212ENST00000572259 CDC42BPBQ9Y5S2 1711 aa8.86□□□□□ -0.99
VPS53-212ENST00000572259 TLR1Q15399 786 aa8.86□□□□□ -0.99
VPS53-212ENST00000572259 SLC4A9Q96Q91 983 aa8.86□□□□□ -0.99
VPS53-212ENST00000572259 EHBP1L1Q8N3D4 1523 aa8.85□□□□□ -0.99
VPS53-212ENST00000572259 MAGI2Q86UL8 1455 aa8.85□□□□□ -0.99
VPS53-212ENST00000572259 A6NJY4 79 aa8.85□□□□□ -0.99
VPS53-212ENST00000572259 AVPP01185 164 aa8.85□□□□□ -0.99
VPS53-212ENST00000572259 BMP2P12643 396 aa8.85□□□□□ -0.99
VPS53-212ENST00000572259 CENPCQ03188 943 aa8.85□□□□□ -0.99
VPS53-212ENST00000572259 KCNA1Q09470 495 aa8.85□□□□□ -0.99
VPS53-212ENST00000572259 LINC00528Q8N1L1 170 aa8.85□□□□□ -0.99
VPS53-212ENST00000572259 CDC42BPAQ5VT25 1732 aa8.85□□□□□ -0.99
VPS53-212ENST00000572259 RICTORQ6R327 1708 aa8.85□□□□□ -0.99
VPS53-212ENST00000572259 MAP3K1Q13233 1512 aa8.85□□□□□ -0.99
VPS53-212ENST00000572259 ZNF518AQ6AHZ1 1483 aa8.84□□□□□ -0.99
VPS53-212ENST00000572259 PREX2Q70Z35 1606 aa8.84□□□□□ -0.99
VPS53-212ENST00000572259 SSFA2P28290 1259 aa8.84□□□□□ -0.99
VPS53-212ENST00000572259 SCARF1Q14162 830 aa8.84□□□□□ -0.99
VPS53-212ENST00000572259 CTC1Q2NKJ3 1217 aa8.84□□□□□ -0.99
VPS53-212ENST00000572259 SUPT6HQ7KZ85 1726 aaKnown RBP8.84□□□□□ -0.99
VPS53-212ENST00000572259 SCG3Q8WXD2 468 aaKnown RBP8.84□□□□□ -0.99
VPS53-212ENST00000572259 POLMQ9NP87 494 aaPredicted RBP8.84□□□□□ -0.99
VPS53-212ENST00000572259 PLEKHH2Q8IVE3 1493 aa8.83□□□□□ -1
VPS53-212ENST00000572259 TIAM1Q13009 1591 aa8.83□□□□□ -1
VPS53-212ENST00000572259 LCE2BO14633 110 aa8.83□□□□□ -1
VPS53-212ENST00000572259 AXIN1O15169 862 aa8.83□□□□□ -1
VPS53-212ENST00000572259 SLC27A3Q5K4L6 730 aa8.83□□□□□ -1
VPS53-212ENST00000572259 C6orf118Q5T5N4 469 aa8.83□□□□□ -1
VPS53-212ENST00000572259 MRPL14Q6P1L8 145 aaKnown RBP8.83□□□□□ -1
VPS53-212ENST00000572259 AFAP1Q8N556 730 aa8.83□□□□□ -1
VPS53-212ENST00000572259 SCHIP1Q9P0W5 487 aaPredicted RBP8.83□□□□□ -1
VPS53-212ENST00000572259 SLAIN2Q9P270 581 aa8.83□□□□□ -1
VPS53-212ENST00000572259 CHMP3Q9Y3E7 222 aa8.83□□□□□ -1
VPS53-212ENST00000572259 GPATCH8Q9UKJ3 1502 aaKnown RBP8.83□□□□□ -1
VPS53-212ENST00000572259 ATAD2Q6PL18 1390 aa8.83□□□□□ -1
VPS53-212ENST00000572259 ITSN2Q9NZM3 1697 aa8.82□□□□□ -1
VPS53-212ENST00000572259 POGZQ7Z3K3 1410 aa8.82□□□□□ -1
VPS53-212ENST00000572259 CDK2AP1O14519 115 aa8.82□□□□□ -1
VPS53-212ENST00000572259 SPINT1O43278 529 aa8.82□□□□□ -1
VPS53-212ENST00000572259 IGFBP4P22692 258 aa8.82□□□□□ -1
VPS53-212ENST00000572259 WEE1P30291 646 aa8.82□□□□□ -1
VPS53-212ENST00000572259 MTFR1Q15390 333 aa8.82□□□□□ -1
VPS53-212ENST00000572259 TMEM214Q6NUQ4 689 aaKnown RBP8.82□□□□□ -1
VPS53-212ENST00000572259 NBPF15Q8N660 670 aa8.82□□□□□ -1
VPS53-212ENST00000572259 GAS2L2Q8NHY3 880 aa8.82□□□□□ -1
VPS53-212ENST00000572259 VTI1AQ96AJ9 217 aa8.82□□□□□ -1
VPS53-212ENST00000572259 ZSCAN10Q96SZ4 725 aaPredicted RBP8.82□□□□□ -1
VPS53-212ENST00000572259 INSM2Q96T92 566 aaPredicted RBP8.82□□□□□ -1
VPS53-212ENST00000572259 TSPAN10Q9H1Z9 355 aaPredicted RBP8.82□□□□□ -1
VPS53-212ENST00000572259 CXXC1Q9P0U4 656 aaPredicted RBP8.82□□□□□ -1
VPS53-212ENST00000572259 LRRC9Q6ZRR7 1453 aa8.82□□□□□ -1
VPS53-212ENST00000572259 ZMYM4Q5VZL5 1548 aa8.81□□□□□ -1
VPS53-212ENST00000572259 PPP1R12BO60237 982 aaPredicted RBP8.81□□□□□ -1
VPS53-212ENST00000572259 ARID4AP29374 1257 aaPredicted RBP8.81□□□□□ -1
VPS53-212ENST00000572259 SMCPP49901 116 aaPredicted RBP8.81□□□□□ -1
VPS53-212ENST00000572259 HNRNPMP52272 730 aaKnown RBP eCLIP8.81□□□□□ -1
VPS53-212ENST00000572259 TBCELQ5QJ74 424 aa8.81□□□□□ -1
VPS53-212ENST00000572259 SLC9A9Q8IVB4 645 aa8.81□□□□□ -1
VPS53-212ENST00000572259 FAM177A1Q8N128 213 aaPredicted RBP8.81□□□□□ -1
VPS53-212ENST00000572259 CCER1Q8TC90 406 aaPredicted RBP8.81□□□□□ -1
VPS53-212ENST00000572259 HRH3Q9Y5N1 445 aa8.81□□□□□ -1
VPS53-212ENST00000572259 KIAA1107Q9UPP5 1409 aa8.8□□□□□ -1
VPS53-212ENST00000572259 ZFYVE16Q7Z3T8 1539 aa8.8□□□□□ -1
VPS53-212ENST00000572259 GPC1P35052 558 aa8.8□□□□□ -1
VPS53-212ENST00000572259 EPHA4P54764 986 aa8.8□□□□□ -1
VPS53-212ENST00000572259 OCLNQ16625 522 aa8.8□□□□□ -1
VPS53-212ENST00000572259 PURBQ96QR8 312 aaKnown RBP8.8□□□□□ -1
VPS53-212ENST00000572259 FHDC1Q9C0D6 1143 aaPredicted RBP8.8□□□□□ -1
VPS53-212ENST00000572259 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.8□□□□□ -1
VPS53-212ENST00000572259 NCOA2Q15596 1464 aa8.8□□□□□ -1
VPS53-212ENST00000572259 FRMPD1Q5SYB0 1578 aa8.8□□□□□ -1
VPS53-212ENST00000572259 SPAG9O60271 1321 aaKnown RBP8.8□□□□□ -1
VPS53-212ENST00000572259 ATP10AO60312 1499 aa8.79□□□□□ -1
VPS53-212ENST00000572259 FOXO3O43524 673 aa8.79□□□□□ -1
VPS53-212ENST00000572259 TSPY4P0CV99 314 aa8.79□□□□□ -1
VPS53-212ENST00000572259 TSPY10P0CW01 314 aa8.79□□□□□ -1
VPS53-212ENST00000572259 RNF144AP50876 292 aaPredicted RBP8.79□□□□□ -1
VPS53-212ENST00000572259 FOXK2Q01167 660 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms