RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 PNMA3Q9UL41 463 aa8.35□□□□□ -1.07
VPS53-208ENST00000570650 WWC3Q9ULE0 1092 aa8.35□□□□□ -1.07
VPS53-208ENST00000570650 FAM208AQ9UK61 1670 aaKnown RBP8.34□□□□□ -1.07
VPS53-208ENST00000570650 GOLGA8CPA6NN73 597 aa8.34□□□□□ -1.07
VPS53-208ENST00000570650 NBPF26B4DH59 902 aa8.34□□□□□ -1.07
VPS53-208ENST00000570650 FECHP22830 423 aa8.34□□□□□ -1.07
VPS53-208ENST00000570650 NUDT18Q6ZVK8 323 aa8.34□□□□□ -1.07
VPS53-208ENST00000570650 TATDN2Q93075 761 aa8.34□□□□□ -1.07
VPS53-208ENST00000570650 LTV1Q96GA3 475 aaPredicted RBP8.34□□□□□ -1.07
VPS53-208ENST00000570650 ZFRQ96KR1 1074 aaKnown RBP8.34□□□□□ -1.07
VPS53-208ENST00000570650 SBNO2Q9Y2G9 1366 aa8.34□□□□□ -1.07
VPS53-208ENST00000570650 CICQ96RK0 1608 aaPredicted RBP8.33□□□□□ -1.08
VPS53-208ENST00000570650 TULP1O00294 542 aaPredicted RBP8.33□□□□□ -1.08
VPS53-208ENST00000570650 PRELPP51888 382 aa8.33□□□□□ -1.08
VPS53-208ENST00000570650 FAM161AQ3B820 660 aa8.33□□□□□ -1.08
VPS53-208ENST00000570650 TNS4Q8IZW8 715 aa8.33□□□□□ -1.08
VPS53-208ENST00000570650 JMYQ8N9B5 988 aa8.33□□□□□ -1.08
VPS53-208ENST00000570650 WNT2BQ93097 391 aa8.33□□□□□ -1.08
VPS53-208ENST00000570650 KLRG1Q96E93 195 aa8.33□□□□□ -1.08
VPS53-208ENST00000570650 C5P01031 1676 aa8.33□□□□□ -1.08
VPS53-208ENST00000570650 WDR90Q96KV7 1748 aa8.32□□□□□ -1.08
VPS53-208ENST00000570650 HIC1Q14526 733 aa8.32□□□□□ -1.08
VPS53-208ENST00000570650 THSD4Q6ZMP0 1018 aa8.32□□□□□ -1.08
VPS53-208ENST00000570650 HDGFL2Q7Z4V5 671 aaPredicted RBP8.32□□□□□ -1.08
VPS53-208ENST00000570650 RBM46Q8TBY0 533 aaKnown RBP8.32□□□□□ -1.08
VPS53-208ENST00000570650 AK7Q96M32 723 aa8.32□□□□□ -1.08
VPS53-208ENST00000570650 CD163L1Q9NR16 1453 aa8.32□□□□□ -1.08
VPS53-208ENST00000570650 EDC4Q6P2E9 1401 aaKnown RBP8.31□□□□□ -1.08
VPS53-208ENST00000570650 NSD3Q9BZ95 1437 aa8.31□□□□□ -1.08
VPS53-208ENST00000570650 MEGF6O75095 1541 aa8.31□□□□□ -1.08
VPS53-208ENST00000570650 GNPATO15228 680 aa8.31□□□□□ -1.08
VPS53-208ENST00000570650 NMRK2Q9NPI5 230 aa8.31□□□□□ -1.08
VPS53-208ENST00000570650 ADGRG1Q9Y653 693 aa8.31□□□□□ -1.08
VPS53-208ENST00000570650 PALLDQ8WX93 1383 aa8.31□□□□□ -1.08
VPS53-208ENST00000570650 CGNL1Q0VF96 1302 aa8.3□□□□□ -1.08
VPS53-208ENST00000570650 C4BP0C0L5 1744 aa8.3□□□□□ -1.08
VPS53-208ENST00000570650 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.3□□□□□ -1.08
VPS53-208ENST00000570650 HOXC9P31274 260 aa8.3□□□□□ -1.08
VPS53-208ENST00000570650 BCAMP50895 628 aa8.3□□□□□ -1.08
VPS53-208ENST00000570650 FSTL1Q12841 308 aa8.3□□□□□ -1.08
VPS53-208ENST00000570650 AMIGO3Q86WK7 504 aa8.3□□□□□ -1.08
VPS53-208ENST00000570650 C16orf71Q8IYS4 520 aaPredicted RBP8.3□□□□□ -1.08
VPS53-208ENST00000570650 ANKK1Q8NFD2 765 aa8.3□□□□□ -1.08
VPS53-208ENST00000570650 TMC1Q8TDI8 760 aa8.3□□□□□ -1.08
VPS53-208ENST00000570650 EYA1Q99502 592 aa8.3□□□□□ -1.08
VPS53-208ENST00000570650 TAF1LQ8IZX4 1826 aa8.3□□□□□ -1.08
VPS53-208ENST00000570650 ROCK2O75116 1388 aaKnown RBP8.3□□□□□ -1.08
VPS53-208ENST00000570650 SSFA2P28290 1259 aa8.29□□□□□ -1.08
VPS53-208ENST00000570650 AMPHP49418 695 aa8.29□□□□□ -1.08
VPS53-208ENST00000570650 HTRA3P83110 453 aa8.29□□□□□ -1.08
VPS53-208ENST00000570650 RAPGEF4Q8WZA2 1011 aa8.29□□□□□ -1.08
VPS53-208ENST00000570650 SMARCC1Q92922 1105 aaPredicted RBP8.29□□□□□ -1.08
VPS53-208ENST00000570650 BCS1LQ9Y276 419 aa8.29□□□□□ -1.08
VPS53-208ENST00000570650 TOGARAM1Q9Y4F4 1720 aa8.29□□□□□ -1.08
VPS53-208ENST00000570650 MAP3K19Q56UN5 1328 aa8.29□□□□□ -1.08
VPS53-208ENST00000570650 UBR3Q6ZT12 1888 aa8.28□□□□□ -1.08
VPS53-208ENST00000570650 PXDNLA1KZ92 1463 aa8.28□□□□□ -1.08
VPS53-208ENST00000570650 PTPN5P54829 565 aa8.28□□□□□ -1.08
VPS53-208ENST00000570650 TGFB2P61812 414 aa8.28□□□□□ -1.08
VPS53-208ENST00000570650 MPRIPQ6WCQ1 1025 aa8.28□□□□□ -1.08
VPS53-208ENST00000570650 ARHGAP27Q6ZUM4 889 aa8.28□□□□□ -1.08
VPS53-208ENST00000570650 SMIM5Q71RC9 77 aa8.28□□□□□ -1.08
VPS53-208ENST00000570650 L3MBTL2Q969R5 705 aa8.28□□□□□ -1.08
VPS53-208ENST00000570650 SLC12A5Q9H2X9 1139 aa8.28□□□□□ -1.08
VPS53-208ENST00000570650 TERF2IPQ9NYB0 399 aa8.28□□□□□ -1.08
VPS53-208ENST00000570650 PCDH11XQ9BZA7 1347 aa8.28□□□□□ -1.08
VPS53-208ENST00000570650 PCDH11YQ9BZA8 1340 aa8.28□□□□□ -1.08
VPS53-208ENST00000570650 RGPD2P0DJD1 1756 aa8.27□□□□□ -1.08
VPS53-208ENST00000570650 A0A1W2PP64 1363 aa8.27□□□□□ -1.09
VPS53-208ENST00000570650 PLEKHG2Q9H7P9 1386 aa8.27□□□□□ -1.09
VPS53-208ENST00000570650 SOWAHBA6NEL2 793 aa8.27□□□□□ -1.09
VPS53-208ENST00000570650 TATP17735 454 aaPredicted RBP8.27□□□□□ -1.09
VPS53-208ENST00000570650 NBPF6Q5VWK0 638 aa8.27□□□□□ -1.09
VPS53-208ENST00000570650 SAMD7Q7Z3H4 446 aa8.27□□□□□ -1.09
VPS53-208ENST00000570650 COG3Q96JB2 828 aa8.27□□□□□ -1.09
VPS53-208ENST00000570650 NBPF4Q96M43 638 aa8.27□□□□□ -1.09
VPS53-208ENST00000570650 HCSTQ9UBK5 93 aa8.27□□□□□ -1.09
VPS53-208ENST00000570650 RTL1A6NKG5 1358 aa8.26□□□□□ -1.09
VPS53-208ENST00000570650 MMP10P09238 476 aa8.26□□□□□ -1.09
VPS53-208ENST00000570650 USHBP1Q8N6Y0 703 aa8.26□□□□□ -1.09
VPS53-208ENST00000570650 LINC00116Q8NCU8 138 aa8.26□□□□□ -1.09
VPS53-208ENST00000570650 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.26□□□□□ -1.09
VPS53-208ENST00000570650 SMG6Q86US8 1419 aaKnown RBP8.26□□□□□ -1.09
VPS53-208ENST00000570650 KDM2BQ8NHM5 1336 aa8.26□□□□□ -1.09
VPS53-208ENST00000570650 KIF13BQ9NQT8 1826 aa8.25□□□□□ -1.09
VPS53-208ENST00000570650 LOC102724428A0A0B4J2F2 783 aa8.25□□□□□ -1.09
VPS53-208ENST00000570650 A0A0G2JLW4 131 aa8.25□□□□□ -1.09
VPS53-208ENST00000570650 HSPA1AP0DMV8 641 aaKnown RBP8.25□□□□□ -1.09
VPS53-208ENST00000570650 HSPA1BP0DMV9 641 aaKnown RBP8.25□□□□□ -1.09
VPS53-208ENST00000570650 SIK1P57059 783 aa8.25□□□□□ -1.09
VPS53-208ENST00000570650 C9orf131Q5VYM1 1079 aa8.25□□□□□ -1.09
VPS53-208ENST00000570650 LRCH3Q96II8 777 aa8.25□□□□□ -1.09
VPS53-208ENST00000570650 C10orf71Q711Q0 1435 aa8.25□□□□□ -1.09
VPS53-208ENST00000570650 KIAA1551Q9HCM1 1747 aa8.25□□□□□ -1.09
VPS53-208ENST00000570650 N4BP2Q86UW6 1770 aaPredicted RBP8.25□□□□□ -1.09
VPS53-208ENST00000570650 CYP27B1O15528 508 aa8.24□□□□□ -1.09
VPS53-208ENST00000570650 DPEP1P16444 411 aa8.24□□□□□ -1.09
VPS53-208ENST00000570650 FBLN1P23142 703 aa8.24□□□□□ -1.09
VPS53-208ENST00000570650 SWT1Q5T5J6 900 aaKnown RBP8.24□□□□□ -1.09
VPS53-208ENST00000570650 SMC1BQ8NDV3 1235 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms