RNA–Protein interactions for RNA: ENST00000570484.1

CTDNEP1-204, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 2

Gene CTDNEP1, Length 393 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-204ENST00000570484 EIF2S2P20042 333 aaKnown RBP8.42□□□□□ -1.06
CTDNEP1-204ENST00000570484 HMGB2P26583 209 aaKnown RBP8.42□□□□□ -1.06
CTDNEP1-204ENST00000570484 ALDH1L2Q3SY69 923 aa8.42□□□□□ -1.06
CTDNEP1-204ENST00000570484 NPM2Q86SE8 214 aaKnown RBP8.42□□□□□ -1.06
CTDNEP1-204ENST00000570484 TSPYL6Q8N831 410 aa8.42□□□□□ -1.06
CTDNEP1-204ENST00000570484 NECTIN2Q92692 538 aa8.42□□□□□ -1.06
CTDNEP1-204ENST00000570484 BCL2L13Q9BXK5 485 aa8.42□□□□□ -1.06
CTDNEP1-204ENST00000570484 TEX13AQ9BXU3 409 aaPredicted RBP8.42□□□□□ -1.06
CTDNEP1-204ENST00000570484 BRWD3Q6RI45 1802 aa8.41□□□□□ -1.06
CTDNEP1-204ENST00000570484 LAMB4A4D0S4 1761 aa8.41□□□□□ -1.06
CTDNEP1-204ENST00000570484 UBR2Q8IWV8 1755 aa8.41□□□□□ -1.06
CTDNEP1-204ENST00000570484 LOC102724428A0A0B4J2F2 783 aa8.41□□□□□ -1.06
CTDNEP1-204ENST00000570484 GIGYF1O75420 1035 aaPredicted RBP8.41□□□□□ -1.06
CTDNEP1-204ENST00000570484 ATP6V1AP38606 617 aa8.41□□□□□ -1.06
CTDNEP1-204ENST00000570484 RARSP54136 660 aaKnown RBP8.41□□□□□ -1.06
CTDNEP1-204ENST00000570484 SIK1P57059 783 aa8.41□□□□□ -1.06
CTDNEP1-204ENST00000570484 CCNL1Q9UK58 526 aaPredicted RBP8.41□□□□□ -1.06
CTDNEP1-204ENST00000570484 ERBB4Q15303 1308 aa8.4□□□□□ -1.06
CTDNEP1-204ENST00000570484 VAMP4O75379 141 aa8.4□□□□□ -1.06
CTDNEP1-204ENST00000570484 APBA3O96018 575 aa8.4□□□□□ -1.06
CTDNEP1-204ENST00000570484 FTSJ3Q8IY81 847 aaKnown RBP8.4□□□□□ -1.06
CTDNEP1-204ENST00000570484 FRAT1Q92837 279 aaPredicted RBP8.4□□□□□ -1.06
CTDNEP1-204ENST00000570484 CRISPLD2Q9H0B8 497 aa8.4□□□□□ -1.06
CTDNEP1-204ENST00000570484 DBF4Q9UBU7 674 aaPredicted RBP8.4□□□□□ -1.06
CTDNEP1-204ENST00000570484 METRNQ9UJH8 293 aa8.4□□□□□ -1.06
CTDNEP1-204ENST00000570484 VIRMAQ69YN4 1812 aaKnown RBP8.4□□□□□ -1.07
CTDNEP1-204ENST00000570484 BTAF1O14981 1849 aa8.39□□□□□ -1.07
CTDNEP1-204ENST00000570484 ITGB4P16144 1822 aa8.39□□□□□ -1.07
CTDNEP1-204ENST00000570484 TCERG1O14776 1098 aaKnown RBP8.39□□□□□ -1.07
CTDNEP1-204ENST00000570484 IPO8O15397 1037 aaKnown RBP8.39□□□□□ -1.07
CTDNEP1-204ENST00000570484 PLCG2P16885 1265 aa8.39□□□□□ -1.07
CTDNEP1-204ENST00000570484 BAG6P46379 1132 aa8.39□□□□□ -1.07
CTDNEP1-204ENST00000570484 RRP1P56182 461 aaKnown RBP8.39□□□□□ -1.07
CTDNEP1-204ENST00000570484 DNAJC10Q8IXB1 793 aa8.39□□□□□ -1.07
CTDNEP1-204ENST00000570484 MICALL2Q8IY33 904 aa8.39□□□□□ -1.07
CTDNEP1-204ENST00000570484 SSH1Q8WYL5 1049 aa8.39□□□□□ -1.07
CTDNEP1-204ENST00000570484 CHPF2Q9P2E5 772 aa8.39□□□□□ -1.07
CTDNEP1-204ENST00000570484 ZNF330Q9Y3S2 320 aaPredicted RBP8.39□□□□□ -1.07
CTDNEP1-204ENST00000570484 C5P01031 1676 aa8.39□□□□□ -1.07
CTDNEP1-204ENST00000570484 CICQ96RK0 1608 aaPredicted RBP8.39□□□□□ -1.07
CTDNEP1-204ENST00000570484 PTPRCP08575 1304 aa8.38□□□□□ -1.07
CTDNEP1-204ENST00000570484 PRAMEF22A3QJZ6 481 aa8.38□□□□□ -1.07
CTDNEP1-204ENST00000570484 BCAR3O75815 825 aa8.38□□□□□ -1.07
CTDNEP1-204ENST00000570484 DDX58O95786 925 aaKnown RBP8.38□□□□□ -1.07
CTDNEP1-204ENST00000570484 MS4A1P11836 297 aa8.38□□□□□ -1.07
CTDNEP1-204ENST00000570484 MYL6BP14649 208 aa8.38□□□□□ -1.07
CTDNEP1-204ENST00000570484 FKBP5Q13451 457 aaPredicted RBP8.38□□□□□ -1.07
CTDNEP1-204ENST00000570484 SLC27A3Q5K4L6 730 aa8.38□□□□□ -1.07
CTDNEP1-204ENST00000570484 PTF1AQ7RTS3 328 aa8.38□□□□□ -1.07
CTDNEP1-204ENST00000570484 L3MBTL3Q96JM7 780 aaPredicted RBP8.38□□□□□ -1.07
CTDNEP1-204ENST00000570484 AK7Q96M32 723 aa8.38□□□□□ -1.07
CTDNEP1-204ENST00000570484 HYPKQ9NX55 129 aa8.38□□□□□ -1.07
CTDNEP1-204ENST00000570484 BOLA1Q9Y3E2 137 aa8.38□□□□□ -1.07
CTDNEP1-204ENST00000570484 TJP1Q07157 1748 aa8.37□□□□□ -1.07
CTDNEP1-204ENST00000570484 CRKLP46109 303 aaKnown RBP8.37□□□□□ -1.07
CTDNEP1-204ENST00000570484 FLIIQ13045 1269 aa8.37□□□□□ -1.07
CTDNEP1-204ENST00000570484 MFSD10Q14728 455 aa8.37□□□□□ -1.07
CTDNEP1-204ENST00000570484 ZKSCAN2Q63HK3 967 aa8.37□□□□□ -1.07
CTDNEP1-204ENST00000570484 KIF6Q6ZMV9 814 aa8.37□□□□□ -1.07
CTDNEP1-204ENST00000570484 API5Q9BZZ5 524 aaKnown RBP8.37□□□□□ -1.07
CTDNEP1-204ENST00000570484 DDX21Q9NR30 783 aaKnown RBP eCLIP8.37□□□□□ -1.07
CTDNEP1-204ENST00000570484 CCDC87Q9NVE4 849 aa8.37□□□□□ -1.07
CTDNEP1-204ENST00000570484 SUPT16HQ9Y5B9 1047 aaKnown RBP8.37□□□□□ -1.07
CTDNEP1-204ENST00000570484 TNS1Q9HBL0 1735 aaKnown RBP8.37□□□□□ -1.07
CTDNEP1-204ENST00000570484 ZNF831Q5JPB2 1677 aa8.37□□□□□ -1.07
CTDNEP1-204ENST00000570484 CNTNAP4Q9C0A0 1308 aa8.36□□□□□ -1.07
CTDNEP1-204ENST00000570484 GNPATO15228 680 aa8.36□□□□□ -1.07
CTDNEP1-204ENST00000570484 SEC24BO95487 1268 aa8.36□□□□□ -1.07
CTDNEP1-204ENST00000570484 CYP19A1P11511 503 aaPredicted RBP8.36□□□□□ -1.07
CTDNEP1-204ENST00000570484 ITPK1Q13572 414 aa8.36□□□□□ -1.07
CTDNEP1-204ENST00000570484 TXNRD1Q16881 649 aa8.36□□□□□ -1.07
CTDNEP1-204ENST00000570484 ATF7IPQ6VMQ6 1270 aa8.36□□□□□ -1.07
CTDNEP1-204ENST00000570484 MRPL50Q8N5N7 158 aaKnown RBP8.36□□□□□ -1.07
CTDNEP1-204ENST00000570484 ARXQ96QS3 562 aa8.36□□□□□ -1.07
CTDNEP1-204ENST00000570484 USP16Q9Y5T5 823 aa8.36□□□□□ -1.07
CTDNEP1-204ENST00000570484 COL15A1P39059 1388 aa8.35□□□□□ -1.07
CTDNEP1-204ENST00000570484 RGPD3A6NKT7 1758 aaPredicted RBP8.35□□□□□ -1.07
CTDNEP1-204ENST00000570484 RGPD4Q7Z3J3 1758 aa8.35□□□□□ -1.07
CTDNEP1-204ENST00000570484 PXDNLA1KZ92 1463 aa8.35□□□□□ -1.07
CTDNEP1-204ENST00000570484 PLSCR1O15162 318 aa8.35□□□□□ -1.07
CTDNEP1-204ENST00000570484 ANXA1P04083 346 aa8.35□□□□□ -1.07
CTDNEP1-204ENST00000570484 A1BGP04217 495 aa8.35□□□□□ -1.07
CTDNEP1-204ENST00000570484 PDE4AP27815 886 aa8.35□□□□□ -1.07
CTDNEP1-204ENST00000570484 PIP4K2AP48426 406 aaPredicted RBP8.35□□□□□ -1.07
CTDNEP1-204ENST00000570484 BRPF1P55201 1214 aaPredicted RBP8.35□□□□□ -1.07
CTDNEP1-204ENST00000570484 AIMP1Q12904 312 aaKnown RBP8.35□□□□□ -1.07
CTDNEP1-204ENST00000570484 CCDC125Q86Z20 511 aa8.35□□□□□ -1.07
CTDNEP1-204ENST00000570484 LINC00116Q8NCU8 138 aa8.35□□□□□ -1.07
CTDNEP1-204ENST00000570484 SLC4A9Q96Q91 983 aa8.35□□□□□ -1.07
CTDNEP1-204ENST00000570484 NOB1Q9ULX3 412 aaKnown RBP8.35□□□□□ -1.07
CTDNEP1-204ENST00000570484 ZBTB1Q9Y2K1 713 aa8.35□□□□□ -1.07
CTDNEP1-204ENST00000570484 SBF2Q86WG5 1849 aa8.35□□□□□ -1.07
CTDNEP1-204ENST00000570484 LY75O60449 1722 aa8.34□□□□□ -1.07
CTDNEP1-204ENST00000570484 A0A087WZG4 1122 aa8.34□□□□□ -1.07
CTDNEP1-204ENST00000570484 KIF3CO14782 793 aa8.34□□□□□ -1.07
CTDNEP1-204ENST00000570484 PLIN1O60240 522 aa8.34□□□□□ -1.07
CTDNEP1-204ENST00000570484 TRIM27P14373 513 aa8.34□□□□□ -1.07
CTDNEP1-204ENST00000570484 IL6STP40189 918 aaPredicted RBP8.34□□□□□ -1.07
CTDNEP1-204ENST00000570484 KCNQ4P56696 695 aa8.34□□□□□ -1.07
CTDNEP1-204ENST00000570484 NEXNQ0ZGT2 675 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms