RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 POLA2Q14181 598 aa10.61□□□□□ -0.71
LINC00558-201ENST00000569422 KSR2Q6VAB6 950 aa10.61□□□□□ -0.71
LINC00558-201ENST00000569422 KIAA1211Q6ZU35 1233 aa10.61□□□□□ -0.71
LINC00558-201ENST00000569422 CNTROBQ8N137 903 aa10.61□□□□□ -0.71
LINC00558-201ENST00000569422 PI4K2BQ8TCG2 481 aa10.61□□□□□ -0.71
LINC00558-201ENST00000569422 AACSQ86V21 672 aa10.61□□□□□ -0.71
LINC00558-201ENST00000569422 DNAJC5Q9H3Z4 198 aa10.61□□□□□ -0.71
LINC00558-201ENST00000569422 GDPD2Q9HCC8 539 aa10.61□□□□□ -0.71
LINC00558-201ENST00000569422 NPHP4O75161 1426 aaPredicted RBP10.61□□□□□ -0.71
LINC00558-201ENST00000569422 SUCLG2Q96I99 432 aa10.61□□□□□ -0.71
LINC00558-201ENST00000569422 CWC22Q9HCG8 908 aaKnown RBP10.61□□□□□ -0.71
LINC00558-201ENST00000569422 DIAPH3Q9NSV4 1193 aa10.61□□□□□ -0.71
LINC00558-201ENST00000569422 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.61□□□□□ -0.71
LINC00558-201ENST00000569422 NPM3O75607 178 aaKnown RBP10.6□□□□□ -0.71
LINC00558-201ENST00000569422 FAM43AQ8N2R8 423 aa10.6□□□□□ -0.71
LINC00558-201ENST00000569422 BICC1Q9H694 974 aaKnown RBP10.6□□□□□ -0.71
LINC00558-201ENST00000569422 COPS6Q7L5N1 327 aa10.6□□□□□ -0.71
LINC00558-201ENST00000569422 MYD88Q99836 296 aa10.6□□□□□ -0.71
LINC00558-201ENST00000569422 RNF216Q9NWF9 866 aaPredicted RBP10.6□□□□□ -0.71
LINC00558-201ENST00000569422 TATP17735 454 aaPredicted RBP10.59□□□□□ -0.71
LINC00558-201ENST00000569422 ZNF790Q6PG37 636 aa10.59□□□□□ -0.71
LINC00558-201ENST00000569422 XAGE3Q8WTP9 111 aa10.59□□□□□ -0.71
LINC00558-201ENST00000569422 TRIM44Q96DX7 344 aaPredicted RBP10.59□□□□□ -0.71
LINC00558-201ENST00000569422 C19orf44Q9H6X5 657 aa10.59□□□□□ -0.71
LINC00558-201ENST00000569422 LMBRD1Q9NUN5 540 aa10.59□□□□□ -0.71
LINC00558-201ENST00000569422 USP16Q9Y5T5 823 aa10.59□□□□□ -0.71
LINC00558-201ENST00000569422 AK9Q5TCS8 1911 aa10.59□□□□□ -0.71
LINC00558-201ENST00000569422 ATP5J2-PTCD1G3V325 749 aa10.59□□□□□ -0.71
LINC00558-201ENST00000569422 PTCD1O75127 700 aaKnown RBP10.59□□□□□ -0.71
LINC00558-201ENST00000569422 HOXB7P09629 217 aa10.59□□□□□ -0.71
LINC00558-201ENST00000569422 KCNJ4P48050 445 aa10.59□□□□□ -0.71
LINC00558-201ENST00000569422 G3BP1Q13283 466 aaKnown RBP eCLIP10.59□□□□□ -0.71
LINC00558-201ENST00000569422 RASEFQ8IZ41 740 aa10.59□□□□□ -0.71
LINC00558-201ENST00000569422 BOLA2Q9H3K6 86 aa10.59□□□□□ -0.71
LINC00558-201ENST00000569422 ERBB3P21860 1342 aa10.59□□□□□ -0.71
LINC00558-201ENST00000569422 DDX58O95786 925 aaKnown RBP10.59□□□□□ -0.71
LINC00558-201ENST00000569422 HSPA2P54652 639 aa10.59□□□□□ -0.71
LINC00558-201ENST00000569422 KLHL40Q2TBA0 621 aa10.59□□□□□ -0.71
LINC00558-201ENST00000569422 CERS3Q8IU89 383 aa10.59□□□□□ -0.71
LINC00558-201ENST00000569422 ZNF496Q96IT1 587 aaPredicted RBP10.59□□□□□ -0.71
LINC00558-201ENST00000569422 NSFL1CQ9UNZ2 370 aaKnown RBP10.59□□□□□ -0.71
LINC00558-201ENST00000569422 GRM8O00222 908 aa10.58□□□□□ -0.72
LINC00558-201ENST00000569422 HSP90AB4PQ58FF6 505 aa10.58□□□□□ -0.72
LINC00558-201ENST00000569422 TTC5Q8N0Z6 440 aa10.58□□□□□ -0.72
LINC00558-201ENST00000569422 HYPKQ9NX55 129 aa10.58□□□□□ -0.72
LINC00558-201ENST00000569422 TLR7Q9NYK1 1049 aaKnown RBP10.58□□□□□ -0.72
LINC00558-201ENST00000569422 SGSM2O43147 1006 aa10.58□□□□□ -0.72
LINC00558-201ENST00000569422 CYP2E1P05181 493 aaPredicted RBP10.58□□□□□ -0.72
LINC00558-201ENST00000569422 PTMSP20962 102 aa10.58□□□□□ -0.72
LINC00558-201ENST00000569422 KCNG1Q9UIX4 513 aa10.58□□□□□ -0.72
LINC00558-201ENST00000569422 CHMP3Q9Y3E7 222 aa10.58□□□□□ -0.72
LINC00558-201ENST00000569422 NDUFB9Q9Y6M9 179 aa10.58□□□□□ -0.72
LINC00558-201ENST00000569422 NEXNQ0ZGT2 675 aa10.57□□□□□ -0.72
LINC00558-201ENST00000569422 PRPF40BQ6NWY9 871 aaKnown RBP10.57□□□□□ -0.72
LINC00558-201ENST00000569422 ZNF330Q9Y3S2 320 aaPredicted RBP10.57□□□□□ -0.72
LINC00558-201ENST00000569422 NFAT5O94916 1531 aa10.57□□□□□ -0.72
LINC00558-201ENST00000569422 GLRX3O76003 335 aaKnown RBP10.57□□□□□ -0.72
LINC00558-201ENST00000569422 CASTP20810 708 aaKnown RBP10.57□□□□□ -0.72
LINC00558-201ENST00000569422 NASPP49321 788 aaPredicted RBP10.57□□□□□ -0.72
LINC00558-201ENST00000569422 PTH1RQ03431 593 aa10.57□□□□□ -0.72
LINC00558-201ENST00000569422 LINS1Q8NG48 757 aa10.57□□□□□ -0.72
LINC00558-201ENST00000569422 GPT2Q8TD30 523 aa10.57□□□□□ -0.72
LINC00558-201ENST00000569422 EDC3Q96F86 508 aaKnown RBP10.57□□□□□ -0.72
LINC00558-201ENST00000569422 DDX21Q9NR30 783 aaKnown RBP eCLIP10.57□□□□□ -0.72
LINC00558-201ENST00000569422 ECHDC1Q9NTX5 307 aa10.57□□□□□ -0.72
LINC00558-201ENST00000569422 SNX14Q9Y5W7 946 aa10.57□□□□□ -0.72
LINC00558-201ENST00000569422 IGKV5-2P06315 115 aa10.57□□□□□ -0.72
LINC00558-201ENST00000569422 HSPA4P34932 840 aa10.57□□□□□ -0.72
LINC00558-201ENST00000569422 ZSCAN23Q3MJ62 389 aa10.57□□□□□ -0.72
LINC00558-201ENST00000569422 EAF2Q96CJ1 260 aaPredicted RBP10.57□□□□□ -0.72
LINC00558-201ENST00000569422 PSMD1Q99460 953 aa10.57□□□□□ -0.72
LINC00558-201ENST00000569422 SLC52A2Q9HAB3 445 aa10.57□□□□□ -0.72
LINC00558-201ENST00000569422 PDIA6Q15084 440 aa10.56□□□□□ -0.72
LINC00558-201ENST00000569422 KAZALD1Q96I82 304 aa10.56□□□□□ -0.72
LINC00558-201ENST00000569422 FAM227BQ96M60 508 aa10.56□□□□□ -0.72
LINC00558-201ENST00000569422 TCEANC2Q96MN5 208 aa10.56□□□□□ -0.72
LINC00558-201ENST00000569422 SYCE3A1L190 88 aa10.56□□□□□ -0.72
LINC00558-201ENST00000569422 ALDH1L1O75891 902 aa10.56□□□□□ -0.72
LINC00558-201ENST00000569422 SASH1O94885 1247 aa10.56□□□□□ -0.72
LINC00558-201ENST00000569422 PHKG2P15735 406 aa10.56□□□□□ -0.72
LINC00558-201ENST00000569422 AK2P54819 239 aa10.56□□□□□ -0.72
LINC00558-201ENST00000569422 EPHA10Q5JZY3 1008 aa10.56□□□□□ -0.72
LINC00558-201ENST00000569422 RNF214Q8ND24 703 aa10.56□□□□□ -0.72
LINC00558-201ENST00000569422 GPATCH3Q96I76 525 aa10.56□□□□□ -0.72
LINC00558-201ENST00000569422 NPHP3Q7Z494 1330 aa10.56□□□□□ -0.72
LINC00558-201ENST00000569422 LTN1O94822 1766 aa10.55□□□□□ -0.72
LINC00558-201ENST00000569422 MCM2P49736 904 aa10.55□□□□□ -0.72
LINC00558-201ENST00000569422 ADCK5Q3MIX3 580 aa10.55□□□□□ -0.72
LINC00558-201ENST00000569422 ANP32BQ92688 251 aaKnown RBP10.55□□□□□ -0.72
LINC00558-201ENST00000569422 JAKMIP1Q96N16 626 aaKnown RBP10.55□□□□□ -0.72
LINC00558-201ENST00000569422 LSG1Q9H089 658 aaKnown RBP10.55□□□□□ -0.72
LINC00558-201ENST00000569422 PRIM1P49642 420 aaKnown RBP10.55□□□□□ -0.72
LINC00558-201ENST00000569422 CABP4P57796 275 aa10.55□□□□□ -0.72
LINC00558-201ENST00000569422 ANAPC15P60006 121 aa10.55□□□□□ -0.72
LINC00558-201ENST00000569422 UBE3BQ7Z3V4 1068 aa10.55□□□□□ -0.72
LINC00558-201ENST00000569422 IFNL2Q8IZJ0 200 aa10.55□□□□□ -0.72
LINC00558-201ENST00000569422 PRDM16Q9HAZ2 1276 aa10.55□□□□□ -0.72
LINC00558-201ENST00000569422 TMEM94Q12767 1356 aa10.55□□□□□ -0.72
LINC00558-201ENST00000569422 RAD50Q92878 1312 aa10.55□□□□□ -0.72
LINC00558-201ENST00000569422 ANKRD13DQ6ZTN6 518 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms