RNA–Protein interactions for RNA: ENST00000568452.6

CLN3-233, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,616 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-233ENST00000568452 CWF19L2Q2TBE0 894 aaKnown RBP23.71■■□□□ 1.39
CLN3-233ENST00000568452 ARFGEF2Q9Y6D5 1785 aa23.7■■□□□ 1.39
CLN3-233ENST00000568452 PALLDQ8WX93 1383 aa23.7■■□□□ 1.39
CLN3-233ENST00000568452 GRM8O00222 908 aa23.7■■□□□ 1.39
CLN3-233ENST00000568452 SEPT12Q8IYM1 358 aa23.7■■□□□ 1.39
CLN3-233ENST00000568452 UTYO14607 1347 aa23.7■■□□□ 1.38
CLN3-233ENST00000568452 TJP1Q07157 1748 aa23.7■■□□□ 1.38
CLN3-233ENST00000568452 NEURL1BA8MQ27 555 aa23.7■■□□□ 1.38
CLN3-233ENST00000568452 KCNQ2O43526 872 aa23.7■■□□□ 1.38
CLN3-233ENST00000568452 IGKV5-2P06315 115 aa23.7■■□□□ 1.38
CLN3-233ENST00000568452 NBPF7P0C2Y1 421 aaPredicted RBP23.7■■□□□ 1.38
CLN3-233ENST00000568452 CHD1LQ86WJ1 897 aa23.7■■□□□ 1.38
CLN3-233ENST00000568452 CICQ96RK0 1608 aaPredicted RBP23.7■■□□□ 1.38
CLN3-233ENST00000568452 LOC102724428A0A0B4J2F2 783 aa23.69■■□□□ 1.38
CLN3-233ENST00000568452 SIK1P57059 783 aa23.69■■□□□ 1.38
CLN3-233ENST00000568452 TTLL7Q6ZT98 887 aa23.69■■□□□ 1.38
CLN3-233ENST00000568452 ZBTB47Q9UFB7 747 aaPredicted RBP23.69■■□□□ 1.38
CLN3-233ENST00000568452 ANKRD45Q5TZF3 282 aa23.68■■□□□ 1.38
CLN3-233ENST00000568452 ATP6V1AP38606 617 aa23.67■■□□□ 1.38
CLN3-233ENST00000568452 KIF6Q6ZMV9 814 aa23.67■■□□□ 1.38
CLN3-233ENST00000568452 GCKRQ14397 625 aa23.66■■□□□ 1.38
CLN3-233ENST00000568452 NHSQ6T4R5 1651 aa23.66■■□□□ 1.38
CLN3-233ENST00000568452 NPM2Q86SE8 214 aaKnown RBP23.66■■□□□ 1.38
CLN3-233ENST00000568452 NUP188Q5SRE5 1749 aa23.66■■□□□ 1.38
CLN3-233ENST00000568452 ZNF831Q5JPB2 1677 aa23.65■■□□□ 1.38
CLN3-233ENST00000568452 IL6STP40189 918 aaPredicted RBP23.65■■□□□ 1.38
CLN3-233ENST00000568452 LNPKQ9C0E8 428 aa23.65■■□□□ 1.38
CLN3-233ENST00000568452 SSH3Q8TE77 659 aa23.64■■□□□ 1.38
CLN3-233ENST00000568452 ZNF330Q9Y3S2 320 aaPredicted RBP23.64■■□□□ 1.38
CLN3-233ENST00000568452 PNMA6EA0A0J9YXQ4 647 aa23.63■■□□□ 1.37
CLN3-233ENST00000568452 MTX1Q13505 466 aa23.63■■□□□ 1.37
CLN3-233ENST00000568452 ZBTB3Q9H5J0 574 aa23.63■■□□□ 1.37
CLN3-233ENST00000568452 CCDC87Q9NVE4 849 aa23.63■■□□□ 1.37
CLN3-233ENST00000568452 ZBTB1Q9Y2K1 713 aa23.63■■□□□ 1.37
CLN3-233ENST00000568452 PDE4AP27815 886 aa23.62■■□□□ 1.37
CLN3-233ENST00000568452 PPP1R42Q7Z4L9 355 aa23.62■■□□□ 1.37
CLN3-233ENST00000568452 POLA2Q14181 598 aa23.62■■□□□ 1.37
CLN3-233ENST00000568452 MAP3K15Q6ZN16 1313 aa23.62■■□□□ 1.37
CLN3-233ENST00000568452 AFDNP55196 1824 aaKnown RBP23.61■■□□□ 1.37
CLN3-233ENST00000568452 ATP5J2-PTCD1G3V325 749 aa23.61■■□□□ 1.37
CLN3-233ENST00000568452 FAM161AQ3B820 660 aa23.61■■□□□ 1.37
CLN3-233ENST00000568452 CCDC191Q8NCU4 936 aa23.61■■□□□ 1.37
CLN3-233ENST00000568452 CWC25Q9NXE8 425 aaPredicted RBP23.61■■□□□ 1.37
CLN3-233ENST00000568452 COL15A1P39059 1388 aa23.6■■□□□ 1.37
CLN3-233ENST00000568452 SRGAP3O43295 1099 aa23.6■■□□□ 1.37
CLN3-233ENST00000568452 TCIRG1Q13488 830 aa23.6■■□□□ 1.37
CLN3-233ENST00000568452 ITPK1Q13572 414 aa23.6■■□□□ 1.37
CLN3-233ENST00000568452 SUCLG2Q96I99 432 aa23.6■■□□□ 1.37
CLN3-233ENST00000568452 BACH2Q9BYV9 841 aa23.6■■□□□ 1.37
CLN3-233ENST00000568452 CRKLP46109 303 aaKnown RBP23.59■■□□□ 1.37
CLN3-233ENST00000568452 HSP90AB3PQ58FF7 597 aa23.59■■□□□ 1.37
CLN3-233ENST00000568452 RREB1Q92766 1687 aa23.59■■□□□ 1.37
CLN3-233ENST00000568452 BTAF1O14981 1849 aa23.59■■□□□ 1.37
CLN3-233ENST00000568452 A0A087WZG4 1122 aa23.59■■□□□ 1.37
CLN3-233ENST00000568452 INTS5Q6P9B9 1019 aaKnown RBP23.59■■□□□ 1.37
CLN3-233ENST00000568452 KRT27Q7Z3Y8 459 aa23.59■■□□□ 1.37
CLN3-233ENST00000568452 ERVV-1B6SEH8 477 aa23.58■■□□□ 1.36
CLN3-233ENST00000568452 TRIM28Q13263 835 aaKnown RBP23.58■■□□□ 1.36
CLN3-233ENST00000568452 HSP90AB4PQ58FF6 505 aa23.58■■□□□ 1.36
CLN3-233ENST00000568452 FAM182BQ5T319 152 aa23.58■■□□□ 1.36
CLN3-233ENST00000568452 GIGYF2Q6Y7W6 1299 aaKnown RBP23.58■■□□□ 1.36
CLN3-233ENST00000568452 ISCA1Q9BUE6 129 aa23.58■■□□□ 1.36
CLN3-233ENST00000568452 BRWD3Q6RI45 1802 aa23.57■■□□□ 1.36
CLN3-233ENST00000568452 RAB11FIP3O75154 756 aa23.57■■□□□ 1.36
CLN3-233ENST00000568452 EIF5P55010 431 aaKnown RBP23.57■■□□□ 1.36
CLN3-233ENST00000568452 ARXQ96QS3 562 aa23.57■■□□□ 1.36
CLN3-233ENST00000568452 RBM19Q9Y4C8 960 aaKnown RBP23.57■■□□□ 1.36
CLN3-233ENST00000568452 FAM196AQ6ZSG2 479 aa23.56■■□□□ 1.36
CLN3-233ENST00000568452 DZIP3Q86Y13 1208 aaKnown RBP23.56■■□□□ 1.36
CLN3-233ENST00000568452 BICC1Q9H694 974 aaKnown RBP23.56■■□□□ 1.36
CLN3-233ENST00000568452 EXOC6BQ9Y2D4 811 aa23.56■■□□□ 1.36
CLN3-233ENST00000568452 SBF2Q86WG5 1849 aa23.56■■□□□ 1.36
CLN3-233ENST00000568452 COL5A3P25940 1745 aaPredicted RBP23.56■■□□□ 1.36
CLN3-233ENST00000568452 H7C1W4 665 aa23.55■■□□□ 1.36
CLN3-233ENST00000568452 UBE3BQ7Z3V4 1068 aa23.55■■□□□ 1.36
CLN3-233ENST00000568452 KAZALD1Q96I82 304 aa23.55■■□□□ 1.36
CLN3-233ENST00000568452 LRRCC1Q9C099 1032 aa23.55■■□□□ 1.36
CLN3-233ENST00000568452 BCL11BQ9C0K0 894 aaPredicted RBP23.55■■□□□ 1.36
CLN3-233ENST00000568452 SURF6O75683 361 aaKnown RBP23.54■■□□□ 1.36
CLN3-233ENST00000568452 CASP7P55210 303 aa23.54■■□□□ 1.36
CLN3-233ENST00000568452 PTF1AQ7RTS3 328 aa23.54■■□□□ 1.36
CLN3-233ENST00000568452 APBB1O00213 710 aa23.53■■□□□ 1.36
CLN3-233ENST00000568452 CNTNAP4Q9C0A0 1308 aa23.53■■□□□ 1.36
CLN3-233ENST00000568452 C8orf34Q49A92 452 aa23.52■■□□□ 1.36
CLN3-233ENST00000568452 NOP58Q9Y2X3 529 aaKnown RBP23.52■■□□□ 1.36
CLN3-233ENST00000568452 RC3H1Q5TC82 1133 aaKnown RBP23.51■■□□□ 1.35
CLN3-233ENST00000568452 LINC00116Q8NCU8 138 aa23.51■■□□□ 1.35
CLN3-233ENST00000568452 RABL6Q3YEC7 729 aaPredicted RBP23.51■■□□□ 1.35
CLN3-233ENST00000568452 SMARCA5O60264 1052 aaPredicted RBP23.5■■□□□ 1.35
CLN3-233ENST00000568452 HLFQ16534 295 aa23.5■■□□□ 1.35
CLN3-233ENST00000568452 KIF1BPQ96EK5 621 aa23.5■■□□□ 1.35
CLN3-233ENST00000568452 CCNL1Q9UK58 526 aaPredicted RBP23.5■■□□□ 1.35
CLN3-233ENST00000568452 TBC1D2BQ9UPU7 963 aa23.5■■□□□ 1.35
CLN3-233ENST00000568452 ERC1Q8IUD2 1116 aa23.49■■□□□ 1.35
CLN3-233ENST00000568452 PLEKHM2Q8IWE5 1019 aa23.49■■□□□ 1.35
CLN3-233ENST00000568452 ANKRD36CQ5JPF3 1778 aa23.49■■□□□ 1.35
CLN3-233ENST00000568452 PCCAP05165 728 aaPredicted RBP23.48■■□□□ 1.35
CLN3-233ENST00000568452 BMP2KLQ5H9B9 411 aa23.48■■□□□ 1.35
CLN3-233ENST00000568452 MYH14Q7Z406 1995 aaKnown RBP23.48■■□□□ 1.35
CLN3-233ENST00000568452 LY75O60449 1722 aa23.48■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms