RNA–Protein interactions for RNA: ENST00000564678.1

HERPUD1-209, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best)

Gene HERPUD1, Length 2,199 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-209ENST00000564678 ALS2Q96Q42 1657 aa8.96□□□□□ -0.98
HERPUD1-209ENST00000564678 TMEM94Q12767 1356 aa8.96□□□□□ -0.98
HERPUD1-209ENST00000564678 NPHP3Q7Z494 1330 aa8.96□□□□□ -0.98
HERPUD1-209ENST00000564678 SPDYE5A6NIY4 337 aa8.96□□□□□ -0.98
HERPUD1-209ENST00000564678 RNMTO43148 476 aaKnown RBP8.96□□□□□ -0.98
HERPUD1-209ENST00000564678 CDC45O75419 566 aa8.96□□□□□ -0.98
HERPUD1-209ENST00000564678 RFX1P22670 979 aa8.96□□□□□ -0.98
HERPUD1-209ENST00000564678 LRRC59Q96AG4 307 aaKnown RBP8.96□□□□□ -0.98
HERPUD1-209ENST00000564678 OSBPL3Q9H4L5 887 aa8.96□□□□□ -0.98
HERPUD1-209ENST00000564678 RGPD2P0DJD1 1756 aa8.96□□□□□ -0.98
HERPUD1-209ENST00000564678 KDM3BQ7LBC6 1761 aa8.95□□□□□ -0.98
HERPUD1-209ENST00000564678 N4BP2Q86UW6 1770 aaPredicted RBP8.95□□□□□ -0.98
HERPUD1-209ENST00000564678 ERBB3P21860 1342 aa8.95□□□□□ -0.98
HERPUD1-209ENST00000564678 BTBD11A6QL63 1104 aa8.95□□□□□ -0.98
HERPUD1-209ENST00000564678 ATP8B2P98198 1209 aa8.95□□□□□ -0.98
HERPUD1-209ENST00000564678 XPCQ01831 940 aaPredicted RBP8.95□□□□□ -0.98
HERPUD1-209ENST00000564678 TTC22Q5TAA0 569 aa8.95□□□□□ -0.98
HERPUD1-209ENST00000564678 POLR3EQ9NVU0 708 aa8.95□□□□□ -0.98
HERPUD1-209ENST00000564678 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.95□□□□□ -0.98
HERPUD1-209ENST00000564678 SKIV2LQ15477 1246 aaKnown RBP8.95□□□□□ -0.98
HERPUD1-209ENST00000564678 TBC1D9Q6ZT07 1266 aa8.95□□□□□ -0.98
HERPUD1-209ENST00000564678 SNX21Q969T3 373 aa8.95□□□□□ -0.98
HERPUD1-209ENST00000564678 AXIN2Q9Y2T1 843 aa8.95□□□□□ -0.98
HERPUD1-209ENST00000564678 GNPATO15228 680 aa8.94□□□□□ -0.98
HERPUD1-209ENST00000564678 PDIA6Q15084 440 aa8.94□□□□□ -0.98
HERPUD1-209ENST00000564678 ABCC6O95255 1503 aa8.94□□□□□ -0.98
HERPUD1-209ENST00000564678 HEG1Q9ULI3 1381 aa8.94□□□□□ -0.98
HERPUD1-209ENST00000564678 DEKP35659 375 aaKnown RBP8.93□□□□□ -0.98
HERPUD1-209ENST00000564678 PBXIP1Q96AQ6 731 aa8.93□□□□□ -0.98
HERPUD1-209ENST00000564678 ANTXR1Q9H6X2 564 aa8.93□□□□□ -0.98
HERPUD1-209ENST00000564678 DBF4Q9UBU7 674 aaPredicted RBP8.93□□□□□ -0.98
HERPUD1-209ENST00000564678 GSPT1P15170 499 aaKnown RBP8.93□□□□□ -0.98
HERPUD1-209ENST00000564678 CASC1Q6TDU7 716 aa8.93□□□□□ -0.98
HERPUD1-209ENST00000564678 MPRIPQ6WCQ1 1025 aa8.93□□□□□ -0.98
HERPUD1-209ENST00000564678 SRCIN1Q9C0H9 1055 aa8.93□□□□□ -0.98
HERPUD1-209ENST00000564678 USP44Q9H0E7 712 aa8.93□□□□□ -0.98
HERPUD1-209ENST00000564678 HDAC5Q9UQL6 1122 aa8.93□□□□□ -0.98
HERPUD1-209ENST00000564678 RBM47A0AV96 593 aaKnown RBP8.92□□□□□ -0.98
HERPUD1-209ENST00000564678 UBTFL1P0CB47 393 aaPredicted RBP8.92□□□□□ -0.98
HERPUD1-209ENST00000564678 HSCBQ8IWL3 235 aa8.92□□□□□ -0.98
HERPUD1-209ENST00000564678 RAPGEF4Q8WZA2 1011 aa8.92□□□□□ -0.98
HERPUD1-209ENST00000564678 MRRFQ96E11 262 aaKnown RBP8.92□□□□□ -0.98
HERPUD1-209ENST00000564678 MS4A4AQ96JQ5 239 aa8.92□□□□□ -0.98
HERPUD1-209ENST00000564678 PHAXQ9H814 394 aaKnown RBP8.92□□□□□ -0.98
HERPUD1-209ENST00000564678 ADAMTS7Q9UKP4 1686 aa8.92□□□□□ -0.98
HERPUD1-209ENST00000564678 STRCP1A6NGW2 1772 aa8.92□□□□□ -0.98
HERPUD1-209ENST00000564678 GIGYF1O75420 1035 aaPredicted RBP8.92□□□□□ -0.98
HERPUD1-209ENST00000564678 EIF2S2P20042 333 aaKnown RBP8.92□□□□□ -0.98
HERPUD1-209ENST00000564678 ZC3H6P61129 1189 aaKnown RBP8.92□□□□□ -0.98
HERPUD1-209ENST00000564678 PDE4CQ08493 712 aa8.92□□□□□ -0.98
HERPUD1-209ENST00000564678 C16orf71Q8IYS4 520 aaPredicted RBP8.92□□□□□ -0.98
HERPUD1-209ENST00000564678 SSH3Q8TE77 659 aa8.92□□□□□ -0.98
HERPUD1-209ENST00000564678 DNAAF4Q8WXU2 420 aa8.92□□□□□ -0.98
HERPUD1-209ENST00000564678 LRRCC1Q9C099 1032 aa8.92□□□□□ -0.98
HERPUD1-209ENST00000564678 SPG7Q9UQ90 795 aa8.92□□□□□ -0.98
HERPUD1-209ENST00000564678 USTQ9Y2C2 406 aa8.92□□□□□ -0.98
HERPUD1-209ENST00000564678 TNS3Q68CZ2 1445 aa8.91□□□□□ -0.98
HERPUD1-209ENST00000564678 KDM4FA0A1W2PPD8 638 aa8.91□□□□□ -0.98
HERPUD1-209ENST00000564678 RAB11FIP3O75154 756 aa8.91□□□□□ -0.98
HERPUD1-209ENST00000564678 TATP17735 454 aaPredicted RBP8.91□□□□□ -0.98
HERPUD1-209ENST00000564678 SPATA31A3Q5VYP0 1347 aa8.91□□□□□ -0.98
HERPUD1-209ENST00000564678 RGPD5Q99666 1765 aa8.91□□□□□ -0.98
HERPUD1-209ENST00000564678 PDE1AP54750 535 aa8.9□□□□□ -0.98
HERPUD1-209ENST00000564678 BEND3Q5T5X7 828 aa8.9□□□□□ -0.98
HERPUD1-209ENST00000564678 HYPKQ9NX55 129 aa8.9□□□□□ -0.98
HERPUD1-209ENST00000564678 CHPF2Q9P2E5 772 aa8.9□□□□□ -0.98
HERPUD1-209ENST00000564678 CPDO75976 1380 aa8.9□□□□□ -0.98
HERPUD1-209ENST00000564678 IBTKQ9P2D0 1353 aaPredicted RBP8.9□□□□□ -0.98
HERPUD1-209ENST00000564678 COL18A1P39060 1754 aa8.9□□□□□ -0.98
HERPUD1-209ENST00000564678 PI4KAP2A4QPH2 592 aa8.9□□□□□ -0.98
HERPUD1-209ENST00000564678 KCNQ3O43525 872 aa8.9□□□□□ -0.98
HERPUD1-209ENST00000564678 TBC1D12O60347 775 aa8.9□□□□□ -0.98
HERPUD1-209ENST00000564678 ALDH1L1O75891 902 aa8.9□□□□□ -0.98
HERPUD1-209ENST00000564678 SDSP20132 328 aa8.9□□□□□ -0.98
HERPUD1-209ENST00000564678 PI4KAP1Q8N8J0 262 aa8.9□□□□□ -0.98
HERPUD1-209ENST00000564678 LRRFIP2Q9Y608 721 aaKnown RBP8.9□□□□□ -0.98
HERPUD1-209ENST00000564678 PXDNQ92626 1479 aa8.9□□□□□ -0.99
HERPUD1-209ENST00000564678 SIPA1L3O60292 1781 aaPredicted RBP8.9□□□□□ -0.99
HERPUD1-209ENST00000564678 SALL3Q9BXA9 1300 aa8.9□□□□□ -0.99
HERPUD1-209ENST00000564678 PNMA6EA0A0J9YXQ4 647 aa8.89□□□□□ -0.99
HERPUD1-209ENST00000564678 GRXCR2A6NFK2 248 aa8.89□□□□□ -0.99
HERPUD1-209ENST00000564678 HSP90AB1P08238 724 aaKnown RBP8.89□□□□□ -0.99
HERPUD1-209ENST00000564678 HSP90AB4PQ58FF6 505 aa8.89□□□□□ -0.99
HERPUD1-209ENST00000564678 IFNL2Q8IZJ0 200 aa8.89□□□□□ -0.99
HERPUD1-209ENST00000564678 UBE2Q2Q8WVN8 375 aa8.89□□□□□ -0.99
HERPUD1-209ENST00000564678 KIF2CQ99661 725 aa8.89□□□□□ -0.99
HERPUD1-209ENST00000564678 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.89□□□□□ -0.99
HERPUD1-209ENST00000564678 SLKQ9H2G2 1235 aaPredicted RBP8.89□□□□□ -0.99
HERPUD1-209ENST00000564678 NLRP2Q9NX02 1062 aa8.89□□□□□ -0.99
HERPUD1-209ENST00000564678 CHMP5Q9NZZ3 219 aa8.89□□□□□ -0.99
HERPUD1-209ENST00000564678 STAP2Q9UGK3 403 aa8.89□□□□□ -0.99
HERPUD1-209ENST00000564678 AOX1Q06278 1338 aa8.89□□□□□ -0.99
HERPUD1-209ENST00000564678 FRAT2O75474 233 aaPredicted RBP8.89□□□□□ -0.99
HERPUD1-209ENST00000564678 REC8O95072 547 aa8.89□□□□□ -0.99
HERPUD1-209ENST00000564678 KSR2Q6VAB6 950 aa8.89□□□□□ -0.99
HERPUD1-209ENST00000564678 OTUD7AQ8TE49 926 aaPredicted RBP8.89□□□□□ -0.99
HERPUD1-209ENST00000564678 USP26Q9BXU7 913 aa8.89□□□□□ -0.99
HERPUD1-209ENST00000564678 SLC52A2Q9HAB3 445 aa8.89□□□□□ -0.99
HERPUD1-209ENST00000564678 DDX58O95786 925 aaKnown RBP8.88□□□□□ -0.99
HERPUD1-209ENST00000564678 CSB-PGBD3P0DP91 1061 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms