RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 RIC3Q7Z5B4 369 aa17.13■□□□□ 0.33
VPS39-206ENST00000562662 PLBD2Q8NHP8 589 aa17.13■□□□□ 0.33
VPS39-206ENST00000562662 SRCIN1Q9C0H9 1055 aa17.13■□□□□ 0.33
VPS39-206ENST00000562662 CCDC87Q9NVE4 849 aa17.13■□□□□ 0.33
VPS39-206ENST00000562662 IBTKQ9P2D0 1353 aaPredicted RBP17.13■□□□□ 0.33
VPS39-206ENST00000562662 C4BP0C0L5 1744 aa17.13■□□□□ 0.33
VPS39-206ENST00000562662 RGPD3A6NKT7 1758 aaPredicted RBP17.12■□□□□ 0.33
VPS39-206ENST00000562662 RGPD4Q7Z3J3 1758 aa17.12■□□□□ 0.33
VPS39-206ENST00000562662 IL6STP40189 918 aaPredicted RBP17.12■□□□□ 0.33
VPS39-206ENST00000562662 MEIS3Q99687 375 aa17.12■□□□□ 0.33
VPS39-206ENST00000562662 METTL22Q9BUU2 404 aaPredicted RBP17.12■□□□□ 0.33
VPS39-206ENST00000562662 ALDH1L1O75891 902 aa17.11■□□□□ 0.33
VPS39-206ENST00000562662 CCNL1Q9UK58 526 aaPredicted RBP17.11■□□□□ 0.33
VPS39-206ENST00000562662 KDM2BQ8NHM5 1336 aa17.11■□□□□ 0.33
VPS39-206ENST00000562662 CNTNAP4Q9C0A0 1308 aa17.11■□□□□ 0.33
VPS39-206ENST00000562662 EIF5P55010 431 aaKnown RBP17.1■□□□□ 0.33
VPS39-206ENST00000562662 KCNQ4P56696 695 aa17.1■□□□□ 0.33
VPS39-206ENST00000562662 LINS1Q8NG48 757 aa17.1■□□□□ 0.33
VPS39-206ENST00000562662 C1orf115Q9H7X2 142 aa17.1■□□□□ 0.33
VPS39-206ENST00000562662 IGKV5-2P06315 115 aa17.09■□□□□ 0.33
VPS39-206ENST00000562662 MYD88Q99836 296 aa17.09■□□□□ 0.33
VPS39-206ENST00000562662 USP44Q9H0E7 712 aa17.09■□□□□ 0.33
VPS39-206ENST00000562662 UBR3Q6ZT12 1888 aa17.09■□□□□ 0.33
VPS39-206ENST00000562662 SCN7AQ01118 1682 aa17.08■□□□□ 0.32
VPS39-206ENST00000562662 MAP3K15Q6ZN16 1313 aa17.08■□□□□ 0.32
VPS39-206ENST00000562662 CWF19L2Q2TBE0 894 aaKnown RBP17.08■□□□□ 0.32
VPS39-206ENST00000562662 RC3H1Q5TC82 1133 aaKnown RBP17.08■□□□□ 0.32
VPS39-206ENST00000562662 ZBTB3Q9H5J0 574 aa17.08■□□□□ 0.32
VPS39-206ENST00000562662 ZNF330Q9Y3S2 320 aaPredicted RBP17.08■□□□□ 0.32
VPS39-206ENST00000562662 C4AP0C0L4 1744 aa17.07■□□□□ 0.32
VPS39-206ENST00000562662 NEURL1BA8MQ27 555 aa17.07■□□□□ 0.32
VPS39-206ENST00000562662 IGHDP01880 384 aa17.07■□□□□ 0.32
VPS39-206ENST00000562662 GNAI3P08754 354 aa17.07■□□□□ 0.32
VPS39-206ENST00000562662 NEXNQ0ZGT2 675 aa17.07■□□□□ 0.32
VPS39-206ENST00000562662 KIF6Q6ZMV9 814 aa17.07■□□□□ 0.32
VPS39-206ENST00000562662 COL15A1P39059 1388 aa17.06■□□□□ 0.32
VPS39-206ENST00000562662 LRRC4BQ9NT99 713 aa17.06■□□□□ 0.32
VPS39-206ENST00000562662 UTYO14607 1347 aa17.05■□□□□ 0.32
VPS39-206ENST00000562662 GNAI2P04899 355 aa17.05■□□□□ 0.32
VPS39-206ENST00000562662 HDAC1Q13547 482 aaPredicted RBP17.05■□□□□ 0.32
VPS39-206ENST00000562662 SLC27A3Q5K4L6 730 aa17.05■□□□□ 0.32
VPS39-206ENST00000562662 CENPQQ7L2Z9 268 aaPredicted RBP17.05■□□□□ 0.32
VPS39-206ENST00000562662 DZIP3Q86Y13 1208 aaKnown RBP17.05■□□□□ 0.32
VPS39-206ENST00000562662 ERVV-1B6SEH8 477 aa17.04■□□□□ 0.32
VPS39-206ENST00000562662 PLSCR1O15162 318 aa17.04■□□□□ 0.32
VPS39-206ENST00000562662 NBPF7P0C2Y1 421 aaPredicted RBP17.04■□□□□ 0.32
VPS39-206ENST00000562662 GCKRQ14397 625 aa17.04■□□□□ 0.32
VPS39-206ENST00000562662 HLFQ16534 295 aa17.04■□□□□ 0.32
VPS39-206ENST00000562662 CEP85Q6P2H3 762 aa17.04■□□□□ 0.32
VPS39-206ENST00000562662 GIGYF2Q6Y7W6 1299 aaKnown RBP17.04■□□□□ 0.32
VPS39-206ENST00000562662 SIRT2Q8IXJ6 389 aa17.04■□□□□ 0.32
VPS39-206ENST00000562662 ISCA1Q9BUE6 129 aa17.04■□□□□ 0.32
VPS39-206ENST00000562662 RWDD1Q9H446 243 aaPredicted RBP17.04■□□□□ 0.32
VPS39-206ENST00000562662 TUBGCP6Q96RT7 1819 aa17.04■□□□□ 0.32
VPS39-206ENST00000562662 ATP5J2-PTCD1G3V325 749 aa17.03■□□□□ 0.32
VPS39-206ENST00000562662 GRM8O00222 908 aa17.03■□□□□ 0.32
VPS39-206ENST00000562662 RPS6KA4O75676 772 aa17.03■□□□□ 0.32
VPS39-206ENST00000562662 UBTFL1P0CB47 393 aaPredicted RBP17.03■□□□□ 0.32
VPS39-206ENST00000562662 TCIRG1Q13488 830 aa17.03■□□□□ 0.32
VPS39-206ENST00000562662 PROM2Q8N271 834 aa17.03■□□□□ 0.32
VPS39-206ENST00000562662 ANKRD44Q8N8A2 993 aa17.03■□□□□ 0.32
VPS39-206ENST00000562662 TBC1D2BQ9UPU7 963 aa17.03■□□□□ 0.32
VPS39-206ENST00000562662 LRRFIP2Q9Y608 721 aaKnown RBP17.03■□□□□ 0.32
VPS39-206ENST00000562662 CAMTA2O94983 1202 aa17.02■□□□□ 0.32
VPS39-206ENST00000562662 APBA3O96018 575 aa17.02■□□□□ 0.32
VPS39-206ENST00000562662 TXNRD1Q16881 649 aa17.02■□□□□ 0.32
VPS39-206ENST00000562662 NPM2Q86SE8 214 aaKnown RBP17.02■□□□□ 0.32
VPS39-206ENST00000562662 RPAP2Q8IXW5 612 aaPredicted RBP17.02■□□□□ 0.32
VPS39-206ENST00000562662 C9orf78Q9NZ63 289 aaPredicted RBP17.02■□□□□ 0.32
VPS39-206ENST00000562662 A0A087WZG4 1122 aa17.01■□□□□ 0.31
VPS39-206ENST00000562662 TRIM28Q13263 835 aaKnown RBP17.01■□□□□ 0.31
VPS39-206ENST00000562662 ARXQ96QS3 562 aa17.01■□□□□ 0.31
VPS39-206ENST00000562662 GNPATO15228 680 aa17■□□□□ 0.31
VPS39-206ENST00000562662 CASP7P55210 303 aa17■□□□□ 0.31
VPS39-206ENST00000562662 HSP90AB3PQ58FF7 597 aa17■□□□□ 0.31
VPS39-206ENST00000562662 AMIGO3Q86WK7 504 aa17■□□□□ 0.31
VPS39-206ENST00000562662 CCDC191Q8NCU4 936 aa17■□□□□ 0.31
VPS39-206ENST00000562662 CWC25Q9NXE8 425 aaPredicted RBP17■□□□□ 0.31
VPS39-206ENST00000562662 MYH3P11055 1940 aa17■□□□□ 0.31
VPS39-206ENST00000562662 SUCLG2Q96I99 432 aa16.99■□□□□ 0.31
VPS39-206ENST00000562662 RTCBQ9Y3I0 505 aaKnown RBP16.99■□□□□ 0.31
VPS39-206ENST00000562662 COL24A1Q17RW2 1714 aa16.99■□□□□ 0.31
VPS39-206ENST00000562662 H7C1W4 665 aa16.98■□□□□ 0.31
VPS39-206ENST00000562662 ATP8B2P98198 1209 aa16.98■□□□□ 0.31
VPS39-206ENST00000562662 SMIM5Q71RC9 77 aa16.98■□□□□ 0.31
VPS39-206ENST00000562662 SMC5Q8IY18 1101 aa16.98■□□□□ 0.31
VPS39-206ENST00000562662 ZNF34Q8IZ26 560 aa16.98■□□□□ 0.31
VPS39-206ENST00000562662 KAZALD1Q96I82 304 aa16.98■□□□□ 0.31
VPS39-206ENST00000562662 AK7Q96M32 723 aa16.98■□□□□ 0.31
VPS39-206ENST00000562662 LAMB2P55268 1798 aa16.97■□□□□ 0.31
VPS39-206ENST00000562662 RGL2O15211 777 aa16.97■□□□□ 0.31
VPS39-206ENST00000562662 NLRP10Q86W26 655 aa16.97■□□□□ 0.31
VPS39-206ENST00000562662 NARFQ9UHQ1 456 aa16.97■□□□□ 0.31
VPS39-206ENST00000562662 HDAC5Q9UQL6 1122 aa16.97■□□□□ 0.31
VPS39-206ENST00000562662 UBN2Q6ZU65 1347 aa16.96■□□□□ 0.31
VPS39-206ENST00000562662 PNMA6EA0A0J9YXQ4 647 aa16.96■□□□□ 0.31
VPS39-206ENST00000562662 GPTP24298 496 aa16.96■□□□□ 0.31
VPS39-206ENST00000562662 HMGB2P26583 209 aaKnown RBP16.96■□□□□ 0.31
VPS39-206ENST00000562662 MTX1Q13505 466 aa16.96■□□□□ 0.31
VPS39-206ENST00000562662 UBE3BQ7Z3V4 1068 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms