RNA–Protein interactions for RNA: ENST00000561514.1

PALB2-202, Transcript of partner and localizer of BRCA2, humanhuman

TSL 5

Gene PALB2, Length 815 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PALB2-202ENST00000561514 PRKCSHP14314 528 aaPredicted RBP11.24□□□□□ -0.61
PALB2-202ENST00000561514 C7orf43Q8WVR3 580 aa11.24□□□□□ -0.61
PALB2-202ENST00000561514 CNKSR1Q969H4 720 aa11.24□□□□□ -0.61
PALB2-202ENST00000561514 SETDB2Q96T68 719 aa11.24□□□□□ -0.61
PALB2-202ENST00000561514 NUDCQ9Y266 331 aa11.24□□□□□ -0.61
PALB2-202ENST00000561514 USP16Q9Y5T5 823 aa11.24□□□□□ -0.61
PALB2-202ENST00000561514 CENPBP07199 599 aaPredicted RBP11.23□□□□□ -0.61
PALB2-202ENST00000561514 SNRPA1P09661 255 aaKnown RBP11.23□□□□□ -0.61
PALB2-202ENST00000561514 HTRA3P83110 453 aa11.23□□□□□ -0.61
PALB2-202ENST00000561514 SOGA3Q5TF21 947 aa11.23□□□□□ -0.61
PALB2-202ENST00000561514 DZIP3Q86Y13 1208 aaKnown RBP11.23□□□□□ -0.61
PALB2-202ENST00000561514 PRAMEF22A3QJZ6 481 aa11.22□□□□□ -0.61
PALB2-202ENST00000561514 NBPF26B4DH59 902 aa11.22□□□□□ -0.61
PALB2-202ENST00000561514 C21orf2O43822 256 aa11.22□□□□□ -0.61
PALB2-202ENST00000561514 ST5P78524 1137 aa11.22□□□□□ -0.61
PALB2-202ENST00000561514 PRPF40BQ6NWY9 871 aaKnown RBP11.22□□□□□ -0.61
PALB2-202ENST00000561514 NBPF10Q6P3W6 841 aaKnown RBP11.22□□□□□ -0.61
PALB2-202ENST00000561514 TIAM2Q8IVF5 1701 aa11.22□□□□□ -0.61
PALB2-202ENST00000561514 NBPF15Q8N660 670 aa11.22□□□□□ -0.61
PALB2-202ENST00000561514 SNED1Q8TER0 1413 aa11.22□□□□□ -0.61
PALB2-202ENST00000561514 ZNF622Q969S3 477 aaKnown RBP eCLIP11.22□□□□□ -0.61
PALB2-202ENST00000561514 MASTLQ96GX5 879 aa11.22□□□□□ -0.61
PALB2-202ENST00000561514 TAOK3Q9H2K8 898 aa11.22□□□□□ -0.61
PALB2-202ENST00000561514 U2AF1L5P0DN76 240 aaPredicted RBP11.21□□□□□ -0.61
PALB2-202ENST00000561514 ZEB1P37275 1124 aaPredicted RBP11.21□□□□□ -0.61
PALB2-202ENST00000561514 U2AF1Q01081 240 aaKnown RBP eCLIP11.21□□□□□ -0.61
PALB2-202ENST00000561514 MCM10Q7L590 875 aa11.21□□□□□ -0.61
PALB2-202ENST00000561514 CCDC24Q8N4L8 307 aa11.21□□□□□ -0.61
PALB2-202ENST00000561514 L3MBTL3Q96JM7 780 aaPredicted RBP11.21□□□□□ -0.61
PALB2-202ENST00000561514 ZNF652Q9Y2D9 606 aa11.21□□□□□ -0.61
PALB2-202ENST00000561514 FER1L6Q2WGJ9 1857 aa11.21□□□□□ -0.62
PALB2-202ENST00000561514 RIC1Q4ADV7 1423 aa11.2□□□□□ -0.62
PALB2-202ENST00000561514 NPR1P16066 1061 aa11.2□□□□□ -0.62
PALB2-202ENST00000561514 ERFEQ4G0M1 354 aa11.2□□□□□ -0.62
PALB2-202ENST00000561514 DPY19L2Q6NUT2 758 aa11.2□□□□□ -0.62
PALB2-202ENST00000561514 NPM2Q86SE8 214 aaKnown RBP11.2□□□□□ -0.62
PALB2-202ENST00000561514 RTF1Q92541 710 aaKnown RBP11.2□□□□□ -0.62
PALB2-202ENST00000561514 FOXD4L1Q9NU39 408 aa11.2□□□□□ -0.62
PALB2-202ENST00000561514 ZNF330Q9Y3S2 320 aaPredicted RBP11.2□□□□□ -0.62
PALB2-202ENST00000561514 PCNTO95613 3336 aa11.2□□□□□ -0.62
PALB2-202ENST00000561514 IBTKQ9P2D0 1353 aaPredicted RBP11.19□□□□□ -0.62
PALB2-202ENST00000561514 ARFGEF2Q9Y6D5 1785 aa11.19□□□□□ -0.62
PALB2-202ENST00000561514 PIP4K2AP48426 406 aaPredicted RBP11.19□□□□□ -0.62
PALB2-202ENST00000561514 TAF7Q15545 349 aaPredicted RBP11.19□□□□□ -0.62
PALB2-202ENST00000561514 NBPF5PQ86XG9 351 aaPredicted RBP11.19□□□□□ -0.62
PALB2-202ENST00000561514 DCTN1Q14203 1278 aa11.18□□□□□ -0.62
PALB2-202ENST00000561514 CRY2Q49AN0 593 aa11.18□□□□□ -0.62
PALB2-202ENST00000561514 CCDC93Q567U6 631 aa11.18□□□□□ -0.62
PALB2-202ENST00000561514 PLEKHF1Q96S99 279 aa11.18□□□□□ -0.62
PALB2-202ENST00000561514 ERVV-1B6SEH8 477 aa11.17□□□□□ -0.62
PALB2-202ENST00000561514 FKBP4Q02790 459 aaKnown RBP eCLIP11.17□□□□□ -0.62
PALB2-202ENST00000561514 CHADLQ6NUI6 762 aa11.17□□□□□ -0.62
PALB2-202ENST00000561514 TPTE2Q6XPS3 522 aa11.17□□□□□ -0.62
PALB2-202ENST00000561514 PNISRQ8TF01 805 aaKnown RBP11.17□□□□□ -0.62
PALB2-202ENST00000561514 NIP7Q9Y221 180 aaKnown RBP eCLIP11.17□□□□□ -0.62
PALB2-202ENST00000561514 ABCC12Q96J65 1359 aa11.16□□□□□ -0.62
PALB2-202ENST00000561514 SLX4Q8IY92 1834 aa11.16□□□□□ -0.62
PALB2-202ENST00000561514 PASKQ96RG2 1323 aa11.16□□□□□ -0.62
PALB2-202ENST00000561514 DDNO94850 711 aaPredicted RBP11.16□□□□□ -0.62
PALB2-202ENST00000561514 EIF4A1P60842 406 aaKnown RBP11.16□□□□□ -0.62
PALB2-202ENST00000561514 CNGB1Q14028 1251 aaPredicted RBP11.16□□□□□ -0.62
PALB2-202ENST00000561514 HLFQ16534 295 aa11.16□□□□□ -0.62
PALB2-202ENST00000561514 COL13A1Q5TAT6 717 aaPredicted RBP11.16□□□□□ -0.62
PALB2-202ENST00000561514 CREBZFQ9NS37 354 aa11.16□□□□□ -0.62
PALB2-202ENST00000561514 ZNF219Q9P2Y4 722 aaPredicted RBP11.16□□□□□ -0.62
PALB2-202ENST00000561514 DICER1Q9UPY3 1922 aaKnown RBP11.15□□□□□ -0.62
PALB2-202ENST00000561514 ERBB4Q15303 1308 aa11.15□□□□□ -0.62
PALB2-202ENST00000561514 IQCA1LA6NCM1 817 aa11.15□□□□□ -0.62
PALB2-202ENST00000561514 NPHP1O15259 732 aa11.15□□□□□ -0.62
PALB2-202ENST00000561514 POTEIP0CG38 1075 aa11.15□□□□□ -0.62
PALB2-202ENST00000561514 POTEJP0CG39 1038 aa11.15□□□□□ -0.62
PALB2-202ENST00000561514 RTKN2Q8IZC4 609 aa11.15□□□□□ -0.62
PALB2-202ENST00000561514 PSMD1Q99460 953 aa11.15□□□□□ -0.62
PALB2-202ENST00000561514 BCL11AQ9H165 835 aa11.15□□□□□ -0.62
PALB2-202ENST00000561514 MAP3K15Q6ZN16 1313 aa11.14□□□□□ -0.63
PALB2-202ENST00000561514 LAMB4A4D0S4 1761 aa11.14□□□□□ -0.63
PALB2-202ENST00000561514 KDM3BQ7LBC6 1761 aa11.14□□□□□ -0.63
PALB2-202ENST00000561514 FZD9O00144 591 aa11.14□□□□□ -0.63
PALB2-202ENST00000561514 HOXA10P31260 410 aaPredicted RBP11.14□□□□□ -0.63
PALB2-202ENST00000561514 NFE2L2Q16236 605 aa11.14□□□□□ -0.63
PALB2-202ENST00000561514 LRP10Q7Z4F1 713 aa11.14□□□□□ -0.63
PALB2-202ENST00000561514 LDHDQ86WU2 507 aa11.14□□□□□ -0.63
PALB2-202ENST00000561514 TAF1DQ9H5J8 278 aaPredicted RBP11.14□□□□□ -0.63
PALB2-202ENST00000561514 ZNF541Q9H0D2 1346 aa11.13□□□□□ -0.63
PALB2-202ENST00000561514 HSPA1AP0DMV8 641 aaKnown RBP11.13□□□□□ -0.63
PALB2-202ENST00000561514 HSPA1BP0DMV9 641 aaKnown RBP11.13□□□□□ -0.63
PALB2-202ENST00000561514 ALDH1B1P30837 517 aa11.13□□□□□ -0.63
PALB2-202ENST00000561514 CC2D2BQ6DHV5 1058 aa11.13□□□□□ -0.63
PALB2-202ENST00000561514 NYXQ9GZU5 481 aa11.13□□□□□ -0.63
PALB2-202ENST00000561514 MIS18AQ9NYP9 233 aa11.13□□□□□ -0.63
PALB2-202ENST00000561514 CNTNAP1P78357 1384 aa11.13□□□□□ -0.63
PALB2-202ENST00000561514 ADAMTSL1Q8N6G6 1762 aa11.13□□□□□ -0.63
PALB2-202ENST00000561514 UBN2Q6ZU65 1347 aa11.12□□□□□ -0.63
PALB2-202ENST00000561514 ITGBL1O95965 494 aaPredicted RBP11.12□□□□□ -0.63
PALB2-202ENST00000561514 IARSP41252 1262 aaKnown RBP11.12□□□□□ -0.63
PALB2-202ENST00000561514 GRIPAP1Q4V328 841 aa11.12□□□□□ -0.63
PALB2-202ENST00000561514 OLFM4Q6UX06 510 aa11.12□□□□□ -0.63
PALB2-202ENST00000561514 TTLL7Q6ZT98 887 aa11.12□□□□□ -0.63
PALB2-202ENST00000561514 ZNF34Q8IZ26 560 aa11.12□□□□□ -0.63
PALB2-202ENST00000561514 ZNF277Q9NRM2 450 aaPredicted RBP11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms