RNA–Protein interactions for RNA: ENST00000560975.5

TPM1-228, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 2,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-228ENST00000560975 ERICH4A6NGS2 130 aa19.58■□□□□ 0.73
TPM1-228ENST00000560975 ARID5BQ14865 1188 aa19.58■□□□□ 0.73
TPM1-228ENST00000560975 ME3Q16798 604 aa19.58■□□□□ 0.73
TPM1-228ENST00000560975 FBXO31Q5XUX0 539 aaPredicted RBP19.58■□□□□ 0.73
TPM1-228ENST00000560975 DNAJC25Q9H1X3 360 aa19.58■□□□□ 0.73
TPM1-228ENST00000560975 MORC2Q9Y6X9 1032 aaPredicted RBP19.58■□□□□ 0.73
TPM1-228ENST00000560975 NPHP1O15259 732 aa19.58■□□□□ 0.72
TPM1-228ENST00000560975 UBTFL1P0CB47 393 aaPredicted RBP19.58■□□□□ 0.72
TPM1-228ENST00000560975 KCNJ4P48050 445 aa19.58■□□□□ 0.72
TPM1-228ENST00000560975 PTH1RQ03431 593 aa19.58■□□□□ 0.72
TPM1-228ENST00000560975 CNTROBQ8N137 903 aa19.58■□□□□ 0.72
TPM1-228ENST00000560975 CRB1P82279 1406 aa19.58■□□□□ 0.72
TPM1-228ENST00000560975 CPS1P31327 1500 aa19.58■□□□□ 0.72
TPM1-228ENST00000560975 USP27XA6NNY8 438 aa19.58■□□□□ 0.72
TPM1-228ENST00000560975 TERF2Q15554 542 aa19.57■□□□□ 0.72
TPM1-228ENST00000560975 KMT5BQ4FZB7 885 aa19.57■□□□□ 0.72
TPM1-228ENST00000560975 PLA2G4DQ86XP0 818 aa19.57■□□□□ 0.72
TPM1-228ENST00000560975 ZNF215Q9UL58 517 aaPredicted RBP19.57■□□□□ 0.72
TPM1-228ENST00000560975 SOS1Q07889 1333 aaPredicted RBP19.57■□□□□ 0.72
TPM1-228ENST00000560975 NUDT16Q96DE0 195 aaKnown RBP19.57■□□□□ 0.72
TPM1-228ENST00000560975 AOX1Q06278 1338 aa19.56■□□□□ 0.72
TPM1-228ENST00000560975 WASLO00401 505 aaPredicted RBP19.56■□□□□ 0.72
TPM1-228ENST00000560975 EPB41L2O43491 1005 aaKnown RBP19.56■□□□□ 0.72
TPM1-228ENST00000560975 PPP1R42Q7Z4L9 355 aa19.56■□□□□ 0.72
TPM1-228ENST00000560975 RHPN1Q8TCX5 695 aa19.56■□□□□ 0.72
TPM1-228ENST00000560975 USP44Q9H0E7 712 aa19.56■□□□□ 0.72
TPM1-228ENST00000560975 CYP46A1Q9Y6A2 500 aa19.56■□□□□ 0.72
TPM1-228ENST00000560975 ZNF165P49910 485 aa19.56■□□□□ 0.72
TPM1-228ENST00000560975 KRT222Q8N1A0 295 aa19.56■□□□□ 0.72
TPM1-228ENST00000560975 ALKQ9UM73 1620 aa19.56■□□□□ 0.72
TPM1-228ENST00000560975 MTHFSDQ2M296 383 aaKnown RBP19.55■□□□□ 0.72
TPM1-228ENST00000560975 ST7Q9NRC1 585 aa19.55■□□□□ 0.72
TPM1-228ENST00000560975 SPATA32Q96LK8 384 aa19.55■□□□□ 0.72
TPM1-228ENST00000560975 TCEANC2Q96MN5 208 aa19.55■□□□□ 0.72
TPM1-228ENST00000560975 TRMT1Q9NXH9 659 aaKnown RBP19.55■□□□□ 0.72
TPM1-228ENST00000560975 MAPK8IP2Q13387 824 aaPredicted RBP19.54■□□□□ 0.72
TPM1-228ENST00000560975 COL9A3Q14050 684 aaPredicted RBP19.54■□□□□ 0.72
TPM1-228ENST00000560975 VPS53Q5VIR6 699 aa19.54■□□□□ 0.72
TPM1-228ENST00000560975 ZNF397Q8NF99 534 aaPredicted RBP19.54■□□□□ 0.72
TPM1-228ENST00000560975 ZSCAN31Q96LW9 406 aaPredicted RBP19.54■□□□□ 0.72
TPM1-228ENST00000560975 SH2B1Q9NRF2 756 aaPredicted RBP19.54■□□□□ 0.72
TPM1-228ENST00000560975 TPCN1Q9ULQ1 816 aa19.54■□□□□ 0.72
TPM1-228ENST00000560975 MLH3Q9UHC1 1453 aa19.53■□□□□ 0.72
TPM1-228ENST00000560975 NR1I2O75469 434 aa19.53■□□□□ 0.72
TPM1-228ENST00000560975 CDK11BP21127 795 aaKnown RBP19.53■□□□□ 0.72
TPM1-228ENST00000560975 ELF2Q15723 593 aa19.53■□□□□ 0.72
TPM1-228ENST00000560975 BICD2Q8TD16 824 aa19.53■□□□□ 0.72
TPM1-228ENST00000560975 SRGAP3O43295 1099 aa19.53■□□□□ 0.72
TPM1-228ENST00000560975 TDRD7Q8NHU6 1098 aaKnown RBP19.53■□□□□ 0.72
TPM1-228ENST00000560975 FBXO38Q6PIJ6 1188 aa19.52■□□□□ 0.72
TPM1-228ENST00000560975 TXNDC2Q86VQ3 553 aa19.52■□□□□ 0.72
TPM1-228ENST00000560975 SSH3Q8TE77 659 aa19.52■□□□□ 0.72
TPM1-228ENST00000560975 PTPN14Q15678 1187 aa19.52■□□□□ 0.71
TPM1-228ENST00000560975 CCDC30Q5VVM6 783 aa19.52■□□□□ 0.71
TPM1-228ENST00000560975 ARHGAP30Q7Z6I6 1101 aaPredicted RBP19.51■□□□□ 0.71
TPM1-228ENST00000560975 KLHL34Q8N239 644 aa19.51■□□□□ 0.71
TPM1-228ENST00000560975 CLSTN2Q9H4D0 955 aa19.51■□□□□ 0.71
TPM1-228ENST00000560975 ZSWIM6Q9HCJ5 1215 aa19.51■□□□□ 0.71
TPM1-228ENST00000560975 NUTM2FA1L443 756 aa19.5■□□□□ 0.71
TPM1-228ENST00000560975 IRX5P78411 483 aaPredicted RBP19.5■□□□□ 0.71
TPM1-228ENST00000560975 STK3Q13188 491 aa19.5■□□□□ 0.71
TPM1-228ENST00000560975 OS9Q13438 667 aaPredicted RBP19.5■□□□□ 0.71
TPM1-228ENST00000560975 FILIP1Q7Z7B0 1213 aa19.5■□□□□ 0.71
TPM1-228ENST00000560975 LRRC8AQ8IWT6 810 aa19.5■□□□□ 0.71
TPM1-228ENST00000560975 CCDC66A2RUB6 948 aa19.5■□□□□ 0.71
TPM1-228ENST00000560975 RAB11FIP3O75154 756 aa19.5■□□□□ 0.71
TPM1-228ENST00000560975 CCDC61Q9Y6R9 512 aa19.5■□□□□ 0.71
TPM1-228ENST00000560975 LEO1Q8WVC0 666 aaPredicted RBP19.5■□□□□ 0.71
TPM1-228ENST00000560975 KIF1BPQ96EK5 621 aa19.5■□□□□ 0.71
TPM1-228ENST00000560975 DDX19AQ9NUU7 478 aaKnown RBP19.5■□□□□ 0.71
TPM1-228ENST00000560975 MAP3K19Q56UN5 1328 aa19.49■□□□□ 0.71
TPM1-228ENST00000560975 A0A087WWV3 80 aa19.49■□□□□ 0.71
TPM1-228ENST00000560975 GOLGA6L19H0YKK7 550 aa19.49■□□□□ 0.71
TPM1-228ENST00000560975 SKILP12757 684 aa19.49■□□□□ 0.71
TPM1-228ENST00000560975 LARP1Q6PKG0 1096 aaKnown RBP19.49■□□□□ 0.71
TPM1-228ENST00000560975 TMEM131LA2VDJ0 1609 aa19.49■□□□□ 0.71
TPM1-228ENST00000560975 RBM6P78332 1123 aaKnown RBP19.49■□□□□ 0.71
TPM1-228ENST00000560975 TRERF1Q96PN7 1200 aa19.49■□□□□ 0.71
TPM1-228ENST00000560975 USP16Q9Y5T5 823 aa19.49■□□□□ 0.71
TPM1-228ENST00000560975 ELP1O95163 1332 aa19.49■□□□□ 0.71
TPM1-228ENST00000560975 TTC21AQ8NDW8 1320 aa19.49■□□□□ 0.71
TPM1-228ENST00000560975 PREX1Q8TCU6 1659 aa19.48■□□□□ 0.71
TPM1-228ENST00000560975 PHAXQ9H814 394 aaKnown RBP19.48■□□□□ 0.71
TPM1-228ENST00000560975 PGBD1Q96JS3 809 aa19.48■□□□□ 0.71
TPM1-228ENST00000560975 SCAND2PQ9GZW5 306 aaPredicted RBP19.48■□□□□ 0.71
TPM1-228ENST00000560975 ZKSCAN1P17029 563 aaPredicted RBP19.47■□□□□ 0.71
TPM1-228ENST00000560975 RUFY2Q8WXA3 655 aa19.47■□□□□ 0.71
TPM1-228ENST00000560975 SYTL4Q96C24 671 aaPredicted RBP19.47■□□□□ 0.71
TPM1-228ENST00000560975 NPHP3Q7Z494 1330 aa19.47■□□□□ 0.71
TPM1-228ENST00000560975 CEBPZQ03701 1054 aaKnown RBP19.47■□□□□ 0.71
TPM1-228ENST00000560975 PDE4CQ08493 712 aa19.47■□□□□ 0.71
TPM1-228ENST00000560975 TIGD1Q96MW7 591 aa19.47■□□□□ 0.71
TPM1-228ENST00000560975 CCDC171Q6TFL3 1326 aa19.47■□□□□ 0.71
TPM1-228ENST00000560975 C11orf57Q6ZUT1 292 aaPredicted RBP19.46■□□□□ 0.71
TPM1-228ENST00000560975 FBXW7Q969H0 707 aa19.46■□□□□ 0.71
TPM1-228ENST00000560975 PPP6R1Q9UPN7 881 aa19.46■□□□□ 0.71
TPM1-228ENST00000560975 RBM8AQ9Y5S9 174 aaKnown RBP19.46■□□□□ 0.71
TPM1-228ENST00000560975 CCDC69A6NI79 296 aa19.46■□□□□ 0.71
TPM1-228ENST00000560975 NBPF7P0C2Y1 421 aaPredicted RBP19.46■□□□□ 0.71
TPM1-228ENST00000560975 NAP1L2Q9ULW6 460 aaPredicted RBP19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 101 ms