RNA–Protein interactions for RNA: ENST00000560959.5

TPM1-226, Transcript of tropomyosin 1, humanhuman

TSL 2 BASIC

Gene TPM1, Length 925 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-226ENST00000560959 PRDM10Q9NQV6 1147 aa25.01■■□□□ 1.59
TPM1-226ENST00000560959 ZNF330Q9Y3S2 320 aaPredicted RBP25.01■■□□□ 1.59
TPM1-226ENST00000560959 PASKQ96RG2 1323 aa25.01■■□□□ 1.59
TPM1-226ENST00000560959 CNTNAP1P78357 1384 aa25.01■■□□□ 1.59
TPM1-226ENST00000560959 A1BGP04217 495 aa25■■□□□ 1.59
TPM1-226ENST00000560959 PCGF6Q9BYE7 350 aa25■■□□□ 1.59
TPM1-226ENST00000560959 SCN7AQ01118 1682 aa25■■□□□ 1.59
TPM1-226ENST00000560959 CEMIPQ8WUJ3 1361 aa24.98■■□□□ 1.59
TPM1-226ENST00000560959 KLRG2A4D1S0 409 aaPredicted RBP24.98■■□□□ 1.59
TPM1-226ENST00000560959 DZIP3Q86Y13 1208 aaKnown RBP24.98■■□□□ 1.59
TPM1-226ENST00000560959 TAF1DQ9H5J8 278 aaPredicted RBP24.98■■□□□ 1.59
TPM1-226ENST00000560959 RGL2O15211 777 aa24.97■■□□□ 1.59
TPM1-226ENST00000560959 KIF7Q2M1P5 1343 aa24.96■■□□□ 1.59
TPM1-226ENST00000560959 COL11A2P13942 1736 aaPredicted RBP24.96■■□□□ 1.59
TPM1-226ENST00000560959 FOXN1O15353 648 aa24.96■■□□□ 1.59
TPM1-226ENST00000560959 CCDC93Q567U6 631 aa24.96■■□□□ 1.59
TPM1-226ENST00000560959 SLX4Q8IY92 1834 aa24.96■■□□□ 1.59
TPM1-226ENST00000560959 TMEM88BA6NKF7 163 aa24.95■■□□□ 1.58
TPM1-226ENST00000560959 ITGBL1O95965 494 aaPredicted RBP24.95■■□□□ 1.58
TPM1-226ENST00000560959 NPR1P16066 1061 aa24.95■■□□□ 1.58
TPM1-226ENST00000560959 BTBD11A6QL63 1104 aa24.94■■□□□ 1.58
TPM1-226ENST00000560959 FKBP4Q02790 459 aaKnown RBP eCLIP24.94■■□□□ 1.58
TPM1-226ENST00000560959 CC2D1BQ5T0F9 858 aaKnown RBP24.94■■□□□ 1.58
TPM1-226ENST00000560959 NBPF5PQ86XG9 351 aaPredicted RBP24.94■■□□□ 1.58
TPM1-226ENST00000560959 ZNF652Q9Y2D9 606 aa24.94■■□□□ 1.58
TPM1-226ENST00000560959 NPC1L1Q9UHC9 1359 aa24.93■■□□□ 1.58
TPM1-226ENST00000560959 U2SURPO15042 1029 aaKnown RBP24.93■■□□□ 1.58
TPM1-226ENST00000560959 CTCFP49711 727 aaPredicted RBP24.93■■□□□ 1.58
TPM1-226ENST00000560959 RTKN2Q8IZC4 609 aa24.93■■□□□ 1.58
TPM1-226ENST00000560959 USP16Q9Y5T5 823 aa24.93■■□□□ 1.58
TPM1-226ENST00000560959 COL3A1P02461 1466 aaPredicted RBP24.92■■□□□ 1.58
TPM1-226ENST00000560959 SCN4AP35499 1836 aa24.92■■□□□ 1.58
TPM1-226ENST00000560959 TPTE2Q6XPS3 522 aa24.92■■□□□ 1.58
TPM1-226ENST00000560959 AIDAQ96BJ3 306 aa24.92■■□□□ 1.58
TPM1-226ENST00000560959 SIPA1L3O60292 1781 aaPredicted RBP24.91■■□□□ 1.58
TPM1-226ENST00000560959 VEGFBP49765 207 aa24.91■■□□□ 1.58
TPM1-226ENST00000560959 PNMA8AQ86V59 439 aaPredicted RBP24.91■■□□□ 1.58
TPM1-226ENST00000560959 HACL1Q9UJ83 578 aa24.91■■□□□ 1.58
TPM1-226ENST00000560959 ARFGEF2Q9Y6D5 1785 aa24.9■■□□□ 1.58
TPM1-226ENST00000560959 KCNQ3O43525 872 aa24.9■■□□□ 1.58
TPM1-226ENST00000560959 WBP1LQ9NX94 342 aa24.9■■□□□ 1.58
TPM1-226ENST00000560959 SNRPA1P09661 255 aaKnown RBP24.89■■□□□ 1.58
TPM1-226ENST00000560959 ALDH1B1P30837 517 aa24.89■■□□□ 1.58
TPM1-226ENST00000560959 FZD9O00144 591 aa24.88■■□□□ 1.57
TPM1-226ENST00000560959 EPHX2P34913 555 aa24.87■■□□□ 1.57
TPM1-226ENST00000560959 PHACTR3Q96KR7 559 aa24.87■■□□□ 1.57
TPM1-226ENST00000560959 ZNF277Q9NRM2 450 aaPredicted RBP24.87■■□□□ 1.57
TPM1-226ENST00000560959 BCORQ6W2J9 1755 aa24.86■■□□□ 1.57
TPM1-226ENST00000560959 RASSF10A6NK89 507 aa24.86■■□□□ 1.57
TPM1-226ENST00000560959 EAPPQ56P03 285 aaPredicted RBP24.86■■□□□ 1.57
TPM1-226ENST00000560959 ZNF541Q9H0D2 1346 aa24.86■■□□□ 1.57
TPM1-226ENST00000560959 DEFB115Q30KQ5 88 aa24.85■■□□□ 1.57
TPM1-226ENST00000560959 NIP7Q9Y221 180 aaKnown RBP eCLIP24.85■■□□□ 1.57
TPM1-226ENST00000560959 CLEC11AQ9Y240 323 aa24.85■■□□□ 1.57
TPM1-226ENST00000560959 IARSP41252 1262 aaKnown RBP24.84■■□□□ 1.57
TPM1-226ENST00000560959 CNTROBQ8N137 903 aa24.84■■□□□ 1.57
TPM1-226ENST00000560959 GPC2Q8N158 579 aa24.84■■□□□ 1.57
TPM1-226ENST00000560959 RSPH6AQ9H0K4 717 aa24.84■■□□□ 1.57
TPM1-226ENST00000560959 PRKAR2BP31323 418 aa24.83■■□□□ 1.57
TPM1-226ENST00000560959 PIP4K2AP48426 406 aaPredicted RBP24.83■■□□□ 1.57
TPM1-226ENST00000560959 SYNE4Q8N205 404 aa24.83■■□□□ 1.57
TPM1-226ENST00000560959 PSMD1Q99460 953 aa24.83■■□□□ 1.57
TPM1-226ENST00000560959 PRAMEF22A3QJZ6 481 aa24.82■■□□□ 1.56
TPM1-226ENST00000560959 MAP2K1Q02750 393 aaPredicted RBP24.82■■□□□ 1.56
TPM1-226ENST00000560959 CC2D2BQ6DHV5 1058 aa24.82■■□□□ 1.56
TPM1-226ENST00000560959 NBPF26B4DH59 902 aa24.81■■□□□ 1.56
TPM1-226ENST00000560959 LBX1P52954 281 aa24.81■■□□□ 1.56
TPM1-226ENST00000560959 NBPF10Q6P3W6 841 aaKnown RBP24.81■■□□□ 1.56
TPM1-226ENST00000560959 NBPF15Q8N660 670 aa24.81■■□□□ 1.56
TPM1-226ENST00000560959 RTF1Q92541 710 aaKnown RBP24.81■■□□□ 1.56
TPM1-226ENST00000560959 ADAMTSL1Q8N6G6 1762 aa24.8■■□□□ 1.56
TPM1-226ENST00000560959 HTATSF1O43719 755 aaKnown RBP24.8■■□□□ 1.56
TPM1-226ENST00000560959 CRY2Q49AN0 593 aa24.8■■□□□ 1.56
TPM1-226ENST00000560959 GRIPAP1Q4V328 841 aa24.8■■□□□ 1.56
TPM1-226ENST00000560959 OLFM4Q6UX06 510 aa24.8■■□□□ 1.56
TPM1-226ENST00000560959 JDP2Q8WYK2 163 aa24.8■■□□□ 1.56
TPM1-226ENST00000560959 CFAP53Q96M91 514 aa24.8■■□□□ 1.56
TPM1-226ENST00000560959 NUDCQ9Y266 331 aa24.8■■□□□ 1.56
TPM1-226ENST00000560959 MAP1SQ66K74 1059 aaPredicted RBP24.79■■□□□ 1.56
TPM1-226ENST00000560959 RNF123Q5XPI4 1314 aa24.79■■□□□ 1.56
TPM1-226ENST00000560959 WDR33Q9C0J8 1336 aaKnown RBP24.79■■□□□ 1.56
TPM1-226ENST00000560959 CACNA1SQ13698 1873 aa24.79■■□□□ 1.56
TPM1-226ENST00000560959 GTF2E1P29083 439 aaPredicted RBP24.78■■□□□ 1.56
TPM1-226ENST00000560959 NYXQ9GZU5 481 aa24.77■■□□□ 1.56
TPM1-226ENST00000560959 SNED1Q8TER0 1413 aa24.77■■□□□ 1.56
TPM1-226ENST00000560959 HSPA8P11142 646 aaKnown RBP24.76■■□□□ 1.55
TPM1-226ENST00000560959 HLFQ16534 295 aa24.76■■□□□ 1.55
TPM1-226ENST00000560959 MCM10Q7L590 875 aa24.76■■□□□ 1.55
TPM1-226ENST00000560959 CCER1Q8TC90 406 aaPredicted RBP24.76■■□□□ 1.55
TPM1-226ENST00000560959 DDX21Q9NR30 783 aaKnown RBP eCLIP24.76■■□□□ 1.55
TPM1-226ENST00000560959 ERVV-1B6SEH8 477 aa24.75■■□□□ 1.55
TPM1-226ENST00000560959 EIF6P56537 245 aaKnown RBP24.75■■□□□ 1.55
TPM1-226ENST00000560959 HOXA10P31260 410 aaPredicted RBP24.74■■□□□ 1.55
TPM1-226ENST00000560959 TAF7Q15545 349 aaPredicted RBP24.74■■□□□ 1.55
TPM1-226ENST00000560959 FAM177BA6PVY3 158 aa24.73■■□□□ 1.55
TPM1-226ENST00000560959 LMOD1P29536 600 aaPredicted RBP24.73■■□□□ 1.55
TPM1-226ENST00000560959 ABHD8Q96I13 439 aa24.73■■□□□ 1.55
TPM1-226ENST00000560959 ABT1Q9ULW3 272 aaKnown RBP24.73■■□□□ 1.55
TPM1-226ENST00000560959 U2AF1L5P0DN76 240 aaPredicted RBP24.71■■□□□ 1.55
TPM1-226ENST00000560959 ECE1P42892 770 aa24.71■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 185.6 ms