RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 KAZALD1Q96I82 304 aa15.99■□□□□ 0.15
SNX1-211ENST00000560829 NOP58Q9Y2X3 529 aaKnown RBP15.99■□□□□ 0.15
SNX1-211ENST00000560829 SALL3Q9BXA9 1300 aa15.99■□□□□ 0.15
SNX1-211ENST00000560829 GSPT1P15170 499 aaKnown RBP15.98■□□□□ 0.15
SNX1-211ENST00000560829 TTC22Q5TAA0 569 aa15.98■□□□□ 0.15
SNX1-211ENST00000560829 DNAJC10Q8IXB1 793 aa15.98■□□□□ 0.15
SNX1-211ENST00000560829 NGLY1Q96IV0 654 aa15.98■□□□□ 0.15
SNX1-211ENST00000560829 C8orf37Q96NL8 207 aa15.98■□□□□ 0.15
SNX1-211ENST00000560829 STARD3NLO95772 234 aa15.97■□□□□ 0.15
SNX1-211ENST00000560829 PRIM1P49642 420 aaKnown RBP15.97■□□□□ 0.15
SNX1-211ENST00000560829 HSP90AB4PQ58FF6 505 aa15.97■□□□□ 0.15
SNX1-211ENST00000560829 OTUD7AQ8TE49 926 aaPredicted RBP15.97■□□□□ 0.15
SNX1-211ENST00000560829 SUCLG2Q96I99 432 aa15.97■□□□□ 0.15
SNX1-211ENST00000560829 UPF2Q9HAU5 1272 aaKnown RBP15.97■□□□□ 0.15
SNX1-211ENST00000560829 CCDC9Q9Y3X0 531 aaKnown RBP15.97■□□□□ 0.15
SNX1-211ENST00000560829 ITGB4P16144 1822 aa15.97■□□□□ 0.15
SNX1-211ENST00000560829 APBB1O00213 710 aa15.97■□□□□ 0.15
SNX1-211ENST00000560829 TTLL7Q6ZT98 887 aa15.97■□□□□ 0.15
SNX1-211ENST00000560829 DDRGK1Q96HY6 314 aa15.97■□□□□ 0.15
SNX1-211ENST00000560829 SURF6O75683 361 aaKnown RBP15.96■□□□□ 0.15
SNX1-211ENST00000560829 SLC4A9Q96Q91 983 aa15.96■□□□□ 0.15
SNX1-211ENST00000560829 TBC1D32Q96NH3 1257 aa15.95■□□□□ 0.14
SNX1-211ENST00000560829 RBM42Q9BTD8 480 aaKnown RBP15.95■□□□□ 0.14
SNX1-211ENST00000560829 ARFGEF2Q9Y6D5 1785 aa15.95■□□□□ 0.14
SNX1-211ENST00000560829 DOT1LQ8TEK3 1739 aa15.95■□□□□ 0.14
SNX1-211ENST00000560829 CYP19A1P11511 503 aaPredicted RBP15.95■□□□□ 0.14
SNX1-211ENST00000560829 PDE1AP54750 535 aa15.95■□□□□ 0.14
SNX1-211ENST00000560829 KIF1BPQ96EK5 621 aa15.95■□□□□ 0.14
SNX1-211ENST00000560829 BICC1Q9H694 974 aaKnown RBP15.95■□□□□ 0.14
SNX1-211ENST00000560829 STAP2Q9UGK3 403 aa15.95■□□□□ 0.14
SNX1-211ENST00000560829 CASP7P55210 303 aa15.94■□□□□ 0.14
SNX1-211ENST00000560829 RHPN1Q8TCX5 695 aa15.94■□□□□ 0.14
SNX1-211ENST00000560829 SYTL4Q96C24 671 aaPredicted RBP15.94■□□□□ 0.14
SNX1-211ENST00000560829 RABL6Q3YEC7 729 aaPredicted RBP15.93■□□□□ 0.14
SNX1-211ENST00000560829 NUP188Q5SRE5 1749 aa15.93■□□□□ 0.14
SNX1-211ENST00000560829 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.93■□□□□ 0.14
SNX1-211ENST00000560829 AOX1Q06278 1338 aa15.93■□□□□ 0.14
SNX1-211ENST00000560829 CDC45O75419 566 aa15.93■□□□□ 0.14
SNX1-211ENST00000560829 FAM98CQ17RN3 349 aaKnown RBP15.93■□□□□ 0.14
SNX1-211ENST00000560829 ATP5J2-PTCD1G3V325 749 aa15.92■□□□□ 0.14
SNX1-211ENST00000560829 H7C1W4 665 aa15.92■□□□□ 0.14
SNX1-211ENST00000560829 EIF5BO60841 1220 aaKnown RBP15.92■□□□□ 0.14
SNX1-211ENST00000560829 MX1P20591 662 aa15.92■□□□□ 0.14
SNX1-211ENST00000560829 TBC1D9Q6ZT07 1266 aa15.92■□□□□ 0.14
SNX1-211ENST00000560829 ERC1Q8IUD2 1116 aa15.92■□□□□ 0.14
SNX1-211ENST00000560829 CCDC191Q8NCU4 936 aa15.92■□□□□ 0.14
SNX1-211ENST00000560829 USP21Q9UK80 565 aa15.92■□□□□ 0.14
SNX1-211ENST00000560829 A0A087WZG4 1122 aa15.91■□□□□ 0.14
SNX1-211ENST00000560829 HSPA1LP34931 641 aa15.91■□□□□ 0.14
SNX1-211ENST00000560829 TRIM28Q13263 835 aaKnown RBP15.91■□□□□ 0.14
SNX1-211ENST00000560829 ISCA1Q9BUE6 129 aa15.91■□□□□ 0.14
SNX1-211ENST00000560829 ZBTB3Q9H5J0 574 aa15.91■□□□□ 0.14
SNX1-211ENST00000560829 CWC25Q9NXE8 425 aaPredicted RBP15.91■□□□□ 0.14
SNX1-211ENST00000560829 SDSP20132 328 aa15.91■□□□□ 0.14
SNX1-211ENST00000560829 EPHA10Q5JZY3 1008 aa15.91■□□□□ 0.14
SNX1-211ENST00000560829 CICQ96RK0 1608 aaPredicted RBP15.9■□□□□ 0.14
SNX1-211ENST00000560829 MFAP1P55081 439 aaKnown RBP15.9■□□□□ 0.14
SNX1-211ENST00000560829 TCIRG1Q13488 830 aa15.9■□□□□ 0.14
SNX1-211ENST00000560829 KIF6Q6ZMV9 814 aa15.9■□□□□ 0.14
SNX1-211ENST00000560829 UBE3BQ7Z3V4 1068 aa15.9■□□□□ 0.14
SNX1-211ENST00000560829 ACSBG1Q96GR2 724 aa15.9■□□□□ 0.14
SNX1-211ENST00000560829 TJP1Q07157 1748 aa15.89■□□□□ 0.13
SNX1-211ENST00000560829 IL6STP40189 918 aaPredicted RBP15.89■□□□□ 0.13
SNX1-211ENST00000560829 IL1RAPL2Q9NP60 686 aa15.89■□□□□ 0.13
SNX1-211ENST00000560829 MAP3K15Q6ZN16 1313 aa15.89■□□□□ 0.13
SNX1-211ENST00000560829 USP42Q9H9J4 1324 aaKnown RBP15.89■□□□□ 0.13
SNX1-211ENST00000560829 SMARCC1Q92922 1105 aaPredicted RBP15.88■□□□□ 0.13
SNX1-211ENST00000560829 C22orf23Q9BZE7 217 aa15.88■□□□□ 0.13
SNX1-211ENST00000560829 ZBTB1Q9Y2K1 713 aa15.88■□□□□ 0.13
SNX1-211ENST00000560829 THSD7AQ9UPZ6 1657 aa15.88■□□□□ 0.13
SNX1-211ENST00000560829 RFX5P48382 616 aaPredicted RBP15.88■□□□□ 0.13
SNX1-211ENST00000560829 RBM25P49756 843 aaKnown RBP15.88■□□□□ 0.13
SNX1-211ENST00000560829 COPRSQ9NQ92 184 aa15.88■□□□□ 0.13
SNX1-211ENST00000560829 PA2G4Q9UQ80 394 aaKnown RBP15.88■□□□□ 0.13
SNX1-211ENST00000560829 LOC102724428A0A0B4J2F2 783 aa15.87■□□□□ 0.13
SNX1-211ENST00000560829 SIK1P57059 783 aa15.87■□□□□ 0.13
SNX1-211ENST00000560829 GIGYF2Q6Y7W6 1299 aaKnown RBP15.87■□□□□ 0.13
SNX1-211ENST00000560829 BCL11AQ9H165 835 aa15.87■□□□□ 0.13
SNX1-211ENST00000560829 PALLDQ8WX93 1383 aa15.87■□□□□ 0.13
SNX1-211ENST00000560829 FOXO4P98177 505 aa15.86■□□□□ 0.13
SNX1-211ENST00000560829 OS9Q13438 667 aaPredicted RBP15.86■□□□□ 0.13
SNX1-211ENST00000560829 CLASRPQ8N2M8 674 aaKnown RBP15.86■□□□□ 0.13
SNX1-211ENST00000560829 ERVV-1B6SEH8 477 aa15.86■□□□□ 0.13
SNX1-211ENST00000560829 G3BP1Q13283 466 aaKnown RBP eCLIP15.86■□□□□ 0.13
SNX1-211ENST00000560829 HSP90AB3PQ58FF7 597 aa15.86■□□□□ 0.13
SNX1-211ENST00000560829 SASH1O94885 1247 aa15.85■□□□□ 0.13
SNX1-211ENST00000560829 JARID2Q92833 1246 aaPredicted RBP15.85■□□□□ 0.13
SNX1-211ENST00000560829 AFDNP55196 1824 aaKnown RBP15.85■□□□□ 0.13
SNX1-211ENST00000560829 TTC41PQ6P2S7 1318 aa15.85■□□□□ 0.13
SNX1-211ENST00000560829 KCNQ2O43526 872 aa15.84■□□□□ 0.13
SNX1-211ENST00000560829 ONECUT3O60422 494 aaPredicted RBP15.84■□□□□ 0.13
SNX1-211ENST00000560829 ATP6V1AP38606 617 aa15.84■□□□□ 0.13
SNX1-211ENST00000560829 EIF5P55010 431 aaKnown RBP15.84■□□□□ 0.13
SNX1-211ENST00000560829 PTPN12Q05209 780 aaKnown RBP15.84■□□□□ 0.13
SNX1-211ENST00000560829 MEX3CQ5U5Q3 659 aaKnown RBP15.84■□□□□ 0.13
SNX1-211ENST00000560829 INTS5Q6P9B9 1019 aaKnown RBP15.84■□□□□ 0.13
SNX1-211ENST00000560829 CASC1Q6TDU7 716 aa15.84■□□□□ 0.13
SNX1-211ENST00000560829 NUTM1Q86Y26 1132 aa15.84■□□□□ 0.13
SNX1-211ENST00000560829 PI4K2BQ8TCG2 481 aa15.84■□□□□ 0.13
SNX1-211ENST00000560829 GJD4Q96KN9 370 aaPredicted RBP15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms