RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 VIRMAQ69YN4 1812 aaKnown RBP12.21□□□□□ -0.45
HDDC3-204ENST00000559834 UBR2Q8IWV8 1755 aa12.21□□□□□ -0.45
HDDC3-204ENST00000559834 LTBP3Q9NS15 1303 aa12.21□□□□□ -0.45
HDDC3-204ENST00000559834 RGL2O15211 777 aa12.21□□□□□ -0.45
HDDC3-204ENST00000559834 PPP2R1AP30153 589 aa12.21□□□□□ -0.45
HDDC3-204ENST00000559834 MCM10Q7L590 875 aa12.21□□□□□ -0.45
HDDC3-204ENST00000559834 TNRC6CQ9HCJ0 1690 aaKnown RBP12.2□□□□□ -0.46
HDDC3-204ENST00000559834 TAF7Q15545 349 aaPredicted RBP12.2□□□□□ -0.46
HDDC3-204ENST00000559834 PRPF40BQ6NWY9 871 aaKnown RBP12.2□□□□□ -0.46
HDDC3-204ENST00000559834 POTECB2RU33 542 aa12.19□□□□□ -0.46
HDDC3-204ENST00000559834 NPR1P16066 1061 aa12.19□□□□□ -0.46
HDDC3-204ENST00000559834 GTF2E1P29083 439 aaPredicted RBP12.19□□□□□ -0.46
HDDC3-204ENST00000559834 WDR90Q96KV7 1748 aa12.19□□□□□ -0.46
HDDC3-204ENST00000559834 PRAMEF22A3QJZ6 481 aa12.18□□□□□ -0.46
HDDC3-204ENST00000559834 PIP4K2AP48426 406 aaPredicted RBP12.18□□□□□ -0.46
HDDC3-204ENST00000559834 PNISRQ8TF01 805 aaKnown RBP12.18□□□□□ -0.46
HDDC3-204ENST00000559834 NIP7Q9Y221 180 aaKnown RBP eCLIP12.18□□□□□ -0.46
HDDC3-204ENST00000559834 DLEC1Q9Y238 1755 aa12.18□□□□□ -0.46
HDDC3-204ENST00000559834 KLRG2A4D1S0 409 aaPredicted RBP12.17□□□□□ -0.46
HDDC3-204ENST00000559834 IQCA1LA6NCM1 817 aa12.17□□□□□ -0.46
HDDC3-204ENST00000559834 DDNO94850 711 aaPredicted RBP12.17□□□□□ -0.46
HDDC3-204ENST00000559834 ALDH1B1P30837 517 aa12.17□□□□□ -0.46
HDDC3-204ENST00000559834 DCTN1Q14203 1278 aa12.17□□□□□ -0.46
HDDC3-204ENST00000559834 CCDC93Q567U6 631 aa12.17□□□□□ -0.46
HDDC3-204ENST00000559834 CHADLQ6NUI6 762 aa12.17□□□□□ -0.46
HDDC3-204ENST00000559834 RTKN2Q8IZC4 609 aa12.17□□□□□ -0.46
HDDC3-204ENST00000559834 PNNQ9H307 717 aaKnown RBP12.17□□□□□ -0.46
HDDC3-204ENST00000559834 NBPF26B4DH59 902 aa12.16□□□□□ -0.46
HDDC3-204ENST00000559834 NBPF10Q6P3W6 841 aaKnown RBP12.16□□□□□ -0.46
HDDC3-204ENST00000559834 NBPF15Q8N660 670 aa12.16□□□□□ -0.46
HDDC3-204ENST00000559834 C7orf43Q8WVR3 580 aa12.16□□□□□ -0.46
HDDC3-204ENST00000559834 SIPA1L3O60292 1781 aaPredicted RBP12.15□□□□□ -0.46
HDDC3-204ENST00000559834 CCDC88AQ3V6T2 1871 aa12.15□□□□□ -0.46
HDDC3-204ENST00000559834 FKBP4Q02790 459 aaKnown RBP eCLIP12.15□□□□□ -0.46
HDDC3-204ENST00000559834 COL13A1Q5TAT6 717 aaPredicted RBP12.15□□□□□ -0.46
HDDC3-204ENST00000559834 NYXQ9GZU5 481 aa12.15□□□□□ -0.46
HDDC3-204ENST00000559834 ANKRD31Q8N7Z5 1873 aa12.14□□□□□ -0.47
HDDC3-204ENST00000559834 SCN7AQ01118 1682 aa12.14□□□□□ -0.47
HDDC3-204ENST00000559834 FAM177BA6PVY3 158 aa12.14□□□□□ -0.47
HDDC3-204ENST00000559834 ERVV-1B6SEH8 477 aa12.14□□□□□ -0.47
HDDC3-204ENST00000559834 NGEFQ8N5V2 710 aa12.14□□□□□ -0.47
HDDC3-204ENST00000559834 CREBZFQ9NS37 354 aa12.14□□□□□ -0.47
HDDC3-204ENST00000559834 MIS18AQ9NYP9 233 aa12.14□□□□□ -0.47
HDDC3-204ENST00000559834 HLFQ16534 295 aa12.13□□□□□ -0.47
HDDC3-204ENST00000559834 CC2D2BQ6DHV5 1058 aa12.13□□□□□ -0.47
HDDC3-204ENST00000559834 LDHDQ86WU2 507 aa12.13□□□□□ -0.47
HDDC3-204ENST00000559834 TNS4Q8IZW8 715 aa12.13□□□□□ -0.47
HDDC3-204ENST00000559834 L3MBTL3Q96JM7 780 aaPredicted RBP12.13□□□□□ -0.47
HDDC3-204ENST00000559834 SLX4Q8IY92 1834 aa12.13□□□□□ -0.47
HDDC3-204ENST00000559834 FER1L6Q2WGJ9 1857 aa12.12□□□□□ -0.47
HDDC3-204ENST00000559834 HSPA1AP0DMV8 641 aaKnown RBP12.12□□□□□ -0.47
HDDC3-204ENST00000559834 HSPA1BP0DMV9 641 aaKnown RBP12.12□□□□□ -0.47
HDDC3-204ENST00000559834 GRIPAP1Q4V328 841 aa12.12□□□□□ -0.47
HDDC3-204ENST00000559834 KIF6Q6ZMV9 814 aa12.12□□□□□ -0.47
HDDC3-204ENST00000559834 SYNE4Q8N205 404 aa12.12□□□□□ -0.47
HDDC3-204ENST00000559834 TAF1DQ9H5J8 278 aaPredicted RBP12.12□□□□□ -0.47
HDDC3-204ENST00000559834 ZNF277Q9NRM2 450 aaPredicted RBP12.12□□□□□ -0.47
HDDC3-204ENST00000559834 RRP7AQ9Y3A4 280 aaKnown RBP12.12□□□□□ -0.47
HDDC3-204ENST00000559834 DICER1Q9UPY3 1922 aaKnown RBP12.11□□□□□ -0.47
HDDC3-204ENST00000559834 EIF4A1P60842 406 aaKnown RBP12.11□□□□□ -0.47
HDDC3-204ENST00000559834 NFE2L2Q16236 605 aa12.11□□□□□ -0.47
HDDC3-204ENST00000559834 PNMA8AQ86V59 439 aaPredicted RBP12.11□□□□□ -0.47
HDDC3-204ENST00000559834 JDP2Q8WYK2 163 aa12.11□□□□□ -0.47
HDDC3-204ENST00000559834 HACL1Q9UJ83 578 aa12.11□□□□□ -0.47
HDDC3-204ENST00000559834 CLEC11AQ9Y240 323 aa12.11□□□□□ -0.47
HDDC3-204ENST00000559834 TIAM2Q8IVF5 1701 aa12.11□□□□□ -0.47
HDDC3-204ENST00000559834 MAP3K15Q6ZN16 1313 aa12.11□□□□□ -0.47
HDDC3-204ENST00000559834 POTEIP0CG38 1075 aa12.1□□□□□ -0.47
HDDC3-204ENST00000559834 POTEJP0CG39 1038 aa12.1□□□□□ -0.47
HDDC3-204ENST00000559834 IARSP41252 1262 aaKnown RBP12.1□□□□□ -0.47
HDDC3-204ENST00000559834 CRY2Q49AN0 593 aa12.1□□□□□ -0.47
HDDC3-204ENST00000559834 EAPPQ56P03 285 aaPredicted RBP12.1□□□□□ -0.47
HDDC3-204ENST00000559834 RPGRQ92834 1020 aaKnown RBP12.1□□□□□ -0.47
HDDC3-204ENST00000559834 PLEKHF1Q96S99 279 aa12.1□□□□□ -0.47
HDDC3-204ENST00000559834 PSMD1Q99460 953 aa12.1□□□□□ -0.47
HDDC3-204ENST00000559834 MAPK8IP3Q9UPT6 1336 aa12.1□□□□□ -0.47
HDDC3-204ENST00000559834 FZD9O00144 591 aa12.09□□□□□ -0.47
HDDC3-204ENST00000559834 MYL6BP14649 208 aa12.09□□□□□ -0.47
HDDC3-204ENST00000559834 EPHX2P34913 555 aa12.09□□□□□ -0.47
HDDC3-204ENST00000559834 NUTM1Q86Y26 1132 aa12.09□□□□□ -0.47
HDDC3-204ENST00000559834 GPC2Q8N158 579 aa12.09□□□□□ -0.47
HDDC3-204ENST00000559834 TMX4Q9H1E5 349 aaPredicted RBP12.09□□□□□ -0.47
HDDC3-204ENST00000559834 MKRN1Q9UHC7 482 aaKnown RBP12.09□□□□□ -0.47
HDDC3-204ENST00000559834 COL11A2P13942 1736 aaPredicted RBP12.08□□□□□ -0.47
HDDC3-204ENST00000559834 BCORQ6W2J9 1755 aa12.08□□□□□ -0.48
HDDC3-204ENST00000559834 TMEM88BA6NKF7 163 aa12.08□□□□□ -0.48
HDDC3-204ENST00000559834 HOXA10P31260 410 aaPredicted RBP12.08□□□□□ -0.48
HDDC3-204ENST00000559834 EIF6P56537 245 aaKnown RBP12.08□□□□□ -0.48
HDDC3-204ENST00000559834 OLFM4Q6UX06 510 aa12.08□□□□□ -0.48
HDDC3-204ENST00000559834 TTLL7Q6ZT98 887 aa12.08□□□□□ -0.48
HDDC3-204ENST00000559834 PPP1R42Q7Z4L9 355 aa12.08□□□□□ -0.48
HDDC3-204ENST00000559834 RBM17Q96I25 401 aaKnown RBP12.08□□□□□ -0.48
HDDC3-204ENST00000559834 ERBB4Q15303 1308 aa12.08□□□□□ -0.48
HDDC3-204ENST00000559834 PASKQ96RG2 1323 aa12.08□□□□□ -0.48
HDDC3-204ENST00000559834 CAPN15O75808 1086 aa12.07□□□□□ -0.48
HDDC3-204ENST00000559834 ITGBL1O95965 494 aaPredicted RBP12.07□□□□□ -0.48
HDDC3-204ENST00000559834 GPTP24298 496 aa12.07□□□□□ -0.48
HDDC3-204ENST00000559834 PARP10Q53GL7 1025 aa12.07□□□□□ -0.48
HDDC3-204ENST00000559834 SUSD4Q5VX71 490 aa12.07□□□□□ -0.48
HDDC3-204ENST00000559834 GIGYF2Q6Y7W6 1299 aaKnown RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms